CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(20)		RSpredict(20)
MCC	0.573	>	0.065
Average MCC ± 95% Confidence Intervals	0.572 ± 0.020	>	0.059 ± 0.016
Sensitivity	0.441	>	0.053
Positive Predictive Value	0.746	>	0.083
Total TP	7941	>	947
Total TN	10368819	>	10367997
Total FP	3094	<	10944
Total FP CONTRA	382	<	1526
Total FP INCONS	2323	<	8995
Total FP COMP	389	<	423
Total FN	10068	<	17062
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(20) and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(20) and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(20) and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(20) and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(20) and RSpredict(20)).

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Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	7941
Total TN	10368819
Total FP	3094
Total FP CONTRA	382
Total FP INCONS	2323
Total FP COMP	389
Total FN	10068

Total Scores
MCC	0.573
Average MCC ± 95% Confidence Intervals	0.572 ± 0.020
Sensitivity	0.441
Positive Predictive Value	0.746
Nr of predictions	176

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.56	0.94	45	47230	4	0	3	1	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.34	0.76	55	108739	19	1	16	2	107
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00114	RNaseP_bact_b links to Rfam database...	0.46	0.39	0.56	30	45397	28	2	22	4	47
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00161	RNaseP_bact_b links to Rfam database...	0.68	0.56	0.83	49	53569	16	0	10	6	38
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00294	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.83	63	114405	14	4	9	1	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00305	RNaseP_bact_b links to Rfam database...	0.62	0.51	0.75	43	54558	21	1	13	7	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00321	RNaseP_bact_b links to Rfam database...	0.66	0.52	0.84	46	54560	18	1	8	9	42
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00427	RNaseP_nuc links to Rfam database...	0.42	0.43	0.41	20	40706	41	10	19	12	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.34	0.58	38	101409	33	1	27	5	73
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00602	Telomerase-vert links to Rfam database...	0.24	0.16	0.35	19	101421	41	2	33	6	97
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.90	1.00	91	45662	4	0	0	4	10
SRP_00011	Plant_SRP links to Rfam database...	0.63	0.52	0.77	54	46290	18	0	16	2	50
SRP_00015	Plant_SRP links to Rfam database...	0.73	0.63	0.86	62	46288	17	0	10	7	37
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37645	3	0	3	0	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	8	4	4	0	59
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.76	0.95	75	44771	7	0	4	3	24
SRP_00066	Metazoa_SRP links to Rfam database...	0.74	0.67	0.83	67	45370	17	5	9	3	33
SRP_00086	Metazoa_SRP links to Rfam database...	0.74	0.66	0.84	66	44174	13	7	6	0	34
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.68	0.84	69	44469	16	1	12	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.75	0.65	0.87	66	45375	12	1	9	2	36
SRP_00152	Plant_SRP links to Rfam database...	0.75	0.64	0.87	66	45677	14	5	5	4	37
SRP_00171	Metazoa_SRP links to Rfam database...	0.66	0.65	0.68	57	45367	35	6	21	8	31
SRP_00178	Plant_SRP links to Rfam database...	0.74	0.57	0.97	58	45693	3	0	2	1	44
SRP_00179	Plant_SRP links to Rfam database...	0.75	0.60	0.93	63	45988	9	0	5	4	42
SRP_00181	Plant_SRP links to Rfam database...	0.71	0.57	0.89	58	45991	9	0	7	2	44
SRP_00182	Plant_SRP links to Rfam database...	0.78	0.68	0.90	69	45979	9	0	8	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.53	0.79	53	45989	17	0	14	3	47
SRP_00188	Plant_SRP links to Rfam database...	0.69	0.59	0.81	47	31067	12	1	10	1	32
SRP_00228	Metazoa_SRP links to Rfam database...	0.75	0.68	0.81	65	45371	19	1	14	4	30
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.68	0.88	67	45074	14	0	9	5	31
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.59	0.42	0.83	38	35465	9	0	8	1	53
SRP_00347	Metazoa_SRP links to Rfam database...	0.72	0.65	0.79	62	46587	23	1	15	7	34
SRP_00368	Metazoa_SRP links to Rfam database...	0.78	0.70	0.87	69	43877	14	1	9	4	29
TMR_00017	tmRNA links to Rfam database...	0.72	0.60	0.87	61	67091	13	0	9	4	41
TMR_00018	tmRNA links to Rfam database...	0.56	0.49	0.65	45	64551	29	6	18	5	47
TMR_00038	tmRNA links to Rfam database...	0.67	0.53	0.84	58	71184	13	5	6	2	52
TMR_00042	tmRNA links to Rfam database...	0.56	0.44	0.70	43	62774	19	1	17	1	55
TMR_00046	tmRNA links to Rfam database...	0.60	0.52	0.69	50	62763	23	6	16	1	46
TMR_00048	tmRNA links to Rfam database...	0.56	0.48	0.66	46	64910	29	9	15	5	49
TMR_00080	tmRNA links to Rfam database...	0.54	0.49	0.60	47	70422	35	12	19	4	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.71	48	67828	25	7	13	5	48
TMR_00123	tmRNA links to Rfam database...	0.64	0.50	0.81	51	66367	17	3	9	5	50
TMR_00137	tmRNA links to Rfam database...	0.54	0.46	0.64	41	61011	28	5	18	5	48
TMR_00142	tmRNA links to Rfam database...	0.64	0.60	0.69	61	70788	34	12	15	7	41
TMR_00207	tmRNA links to Rfam database...	0.53	0.42	0.66	43	72325	26	4	18	4	60
TMR_00257	tmRNA links to Rfam database...	0.56	0.48	0.64	47	67088	29	4	22	3	51
TMR_00271	tmRNA links to Rfam database...	0.55	0.42	0.72	38	64208	20	1	14	5	53
TMR_00332	tmRNA links to Rfam database...	0.70	0.58	0.85	57	67094	16	0	10	6	42
TMR_00366	tmRNA links to Rfam database...	0.53	0.49	0.58	49	67811	43	8	28	7	51
TMR_00378	tmRNA links to Rfam database...	0.57	0.51	0.64	49	67820	37	9	18	10	48
TMR_00399	tmRNA links to Rfam database...	0.61	0.47	0.79	44	64924	18	2	10	6	50
TMR_00404	tmRNA links to Rfam database...	0.53	0.41	0.68	38	67472	21	8	10	3	54
TMR_00427	tmRNA links to Rfam database...	0.20	0.13	0.30	13	67485	30	4	26	0	84
TMR_00443	tmRNA links to Rfam database...	0.73	0.61	0.88	63	67089	13	0	9	4	41
TMR_00451	tmRNA links to Rfam database...	0.52	0.46	0.58	41	63475	36	8	22	6	48
TMR_00458	tmRNA links to Rfam database...	0.50	0.41	0.61	38	63484	29	4	20	5	55
TMR_00469	tmRNA links to Rfam database...	0.64	0.48	0.84	48	64563	10	3	6	1	52
TMR_00472	tmRNA links to Rfam database...	0.70	0.61	0.81	59	64547	15	8	6	1	38
TMR_00519	tmRNA links to Rfam database...	0.49	0.37	0.65	35	63136	23	2	17	4	60
TMR_00520	tmRNA links to Rfam database...	0.44	0.35	0.54	35	63125	36	5	25	6	64
TMR_00522	tmRNA links to Rfam database...	0.49	0.39	0.60	38	63127	29	8	17	4	59
TMR_00528	tmRNA links to Rfam database...	0.48	0.41	0.57	40	63120	36	7	23	6	57
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.63	47	73461	28	8	20	0	57
TMR_00568	tmRNA links to Rfam database...	0.72	0.64	0.82	63	60649	18	3	11	4	36
TMR_00571	tmRNA links to Rfam database...	0.76	0.67	0.86	66	60649	15	2	9	4	33
TMR_00580	tmRNA links to Rfam database...	0.75	0.66	0.86	66	60649	15	2	9	4	34
TMR_00584	tmRNA links to Rfam database...	0.71	0.62	0.81	60	61001	17	4	10	3	37
TMR_00586	tmRNA links to Rfam database...	0.71	0.63	0.79	61	60998	20	5	11	4	36
TMR_00616	tmRNA links to Rfam database...	0.67	0.58	0.79	57	67089	16	6	9	1	42
TMR_00699	tmRNA links to Rfam database...	0.57	0.43	0.75	44	67102	19	1	14	4	58
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	25	3	17	5	57
TMR_00703	tmRNA links to Rfam database...	0.58	0.45	0.75	45	67468	19	3	12	4	54

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	947
Total TN	10367997
Total FP	10944
Total FP CONTRA	1526
Total FP INCONS	8995
Total FP COMP	423
Total FN	17062

Total Scores
MCC	0.065
Average MCC ± 95% Confidence Intervals	0.059 ± 0.016
Sensitivity	0.053
Positive Predictive Value	0.083
Nr of predictions	176

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	47840	54	12	42	0	96
ASE_00007	RNaseP_bact_a links to Rfam database...	0.05	0.04	0.07	4	59624	57	13	44	0	106
ASE_00018	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.18	10	80544	49	7	40	2	124
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82939	94	7	82	5	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84576	90	11	79	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70427	79	8	65	6	118
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78969	34	7	27	0	133
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47218	60	6	54	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45395	56	6	50	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37625	53	1	49	3	85
ASE_00075	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.05	3	108746	70	3	59	8	159
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45116	34	1	33	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	42	5	37	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71576	59	1	54	4	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49718	52	3	49	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	70455	51	5	39	7	115
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62427	56	5	49	2	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53583	45	2	43	0	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88355	55	2	53	0	144
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63491	55	9	46	0	113
ASE_00104	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64206	47	8	37	2	109
ASE_00107	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	73084	65	2	63	0	123
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45389	62	20	42	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54548	68	7	60	1	101
ASE_00119	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.04	2	62788	52	3	42	7	106
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	22	2	18	2	85
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63140	50	4	46	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40422	50	3	45	2	81
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67100	61	5	56	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.07	4	70819	53	5	48	0	120
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57594	47	12	24	11	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53550	82	16	62	4	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53255	51	11	35	5	93
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48767	61	5	56	0	93
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61015	60	7	53	0	109
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44222	32	6	25	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51312	49	6	42	1	100
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84196	62	11	48	3	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	49	8	40	1	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73478	58	8	50	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78937	66	12	54	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45411	41	7	33	1	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93880	81	6	75	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56231	49	11	38	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48444	76	3	69	4	99
ASE_00217	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.09	4	40423	43	5	38	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.18	10	64564	47	10	36	1	107
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46906	70	8	57	5	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42431	55	12	43	0	87
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64206	57	6	49	2	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43916	45	8	32	5	87
ASE_00248	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.17	10	62421	51	12	38	1	104
ASE_00255	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.12	8	74622	65	5	56	4	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50989	51	4	47	0	97
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45099	51	10	41	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72338	52	5	47	0	128
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53256	47	9	36	2	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51946	57	9	48	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44508	43	4	39	0	88
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61715	70	4	57	9	107
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68937	72	9	60	3	122
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.13	10	81733	67	11	56	0	128
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.10	10	114384	87	9	78	0	161
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52927	52	2	46	4	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67482	46	9	37	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54535	87	12	68	7	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80091	109	9	100	0	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54540	79	9	66	4	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72698	75	17	56	2	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	81740	67	5	61	1	134
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75387	79	10	69	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46000	56	11	45	0	85
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57915	55	1	54	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75396	71	4	66	1	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48153	52	5	47	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51317	45	8	35	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54241	47	6	38	3	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58603	56	10	40	6	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	43031	42	9	30	3	85
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51938	65	11	54	0	100
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56902	53	6	45	2	105
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41857	50	15	33	2	84
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48471	45	11	34	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50354	49	7	42	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	9	43	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45709	45	6	38	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.06	0.05	0.08	4	42143	48	8	40	0	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47858	37	5	32	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46928	46	4	39	3	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41569	48	7	40	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41584	33	1	31	1	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	48	3	45	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55878	67	13	54	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57912	63	3	55	5	106
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42449	37	7	30	0	85
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	44	8	34	2	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48778	52	7	43	2	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49418	38	7	30	1	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58265	47	6	40	1	105
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77376	46	6	39	1	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54894	52	14	38	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.18	7	46933	31	5	26	0	87
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.09	0.21	10	56905	39	2	36	1	99
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40707	50	19	29	2	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76592	46	8	36	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46931	41	3	37	1	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79324	77	6	71	0	135
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64203	61	9	49	3	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.11	8	70803	65	15	50	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101404	84	13	58	13	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99153	84	11	71	2	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101402	74	17	56	1	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45659	94	11	83	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.18	0.16	0.20	17	46277	69	3	63	3	87
SRP_00015	Plant_SRP links to Rfam database...	0.21	0.20	0.22	20	46271	70	10	59	1	79
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37609	66	11	55	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36784	72	7	65	0	88
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36783	73	14	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36244	71	10	61	0	89
SRP_00050	Metazoa_SRP links to Rfam database...	0.07	0.07	0.07	7	44756	87	10	77	0	92
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45356	96	4	91	1	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.37	0.36	0.38	36	44158	62	1	58	3	64
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44458	93	6	87	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	2	96	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.20	0.18	0.21	19	45663	73	7	64	2	84
SRP_00171	Metazoa_SRP links to Rfam database...	0.54	0.55	0.55	48	45363	51	4	36	11	40
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45670	83	3	80	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45966	90	5	85	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	6	80	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.24	0.23	0.26	23	45968	67	5	60	2	78
SRP_00184	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45972	70	6	60	4	82
SRP_00188	Plant_SRP links to Rfam database...	0.04	0.04	0.05	3	31059	63	7	56	0	76
SRP_00228	Metazoa_SRP links to Rfam database...	0.06	0.06	0.06	6	45357	89	1	87	1	89
SRP_00317	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	79	45061	18	1	9	8	19
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35432	73	12	61	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46569	96	8	88	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43864	92	8	84	0	98
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.31	28	67072	62	13	48	1	74
TMR_00018	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64538	71	18	50	3	78
TMR_00038	tmRNA links to Rfam database...	0.30	0.25	0.36	27	71178	52	8	40	4	83
TMR_00042	tmRNA links to Rfam database...	0.17	0.15	0.19	15	62757	64	10	53	1	83
TMR_00046	tmRNA links to Rfam database...	0.08	0.07	0.09	7	62756	76	8	64	4	89
TMR_00048	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64899	73	7	60	6	81
TMR_00080	tmRNA links to Rfam database...	0.16	0.15	0.17	14	70418	78	22	46	10	82
TMR_00082	tmRNA links to Rfam database...	0.16	0.15	0.18	14	67818	73	15	49	9	82
TMR_00123	tmRNA links to Rfam database...	0.19	0.17	0.21	17	66350	70	15	48	7	84
TMR_00137	tmRNA links to Rfam database...	0.26	0.25	0.28	22	60995	61	14	44	3	67
TMR_00142	tmRNA links to Rfam database...	0.08	0.07	0.09	7	70797	78	12	60	6	95
TMR_00207	tmRNA links to Rfam database...	0.15	0.14	0.16	14	72304	74	15	57	2	89
TMR_00257	tmRNA links to Rfam database...	0.18	0.15	0.21	15	67091	65	14	41	10	83
TMR_00271	tmRNA links to Rfam database...	0.09	0.08	0.11	7	64195	67	9	50	8	84
TMR_00332	tmRNA links to Rfam database...	0.15	0.14	0.16	14	67071	82	19	57	6	85
TMR_00366	tmRNA links to Rfam database...	0.07	0.07	0.08	7	67809	85	16	64	5	93
TMR_00378	tmRNA links to Rfam database...	0.08	0.07	0.08	7	67811	85	10	68	7	90
TMR_00399	tmRNA links to Rfam database...	0.19	0.16	0.24	15	64917	50	11	37	2	79
TMR_00404	tmRNA links to Rfam database...	0.14	0.13	0.15	12	67446	70	20	50	0	80
TMR_00427	tmRNA links to Rfam database...	0.15	0.13	0.18	13	67456	63	12	47	4	84
TMR_00443	tmRNA links to Rfam database...	0.16	0.14	0.19	15	67081	70	14	51	5	89
TMR_00451	tmRNA links to Rfam database...	0.17	0.17	0.18	15	63461	73	22	48	3	74
TMR_00458	tmRNA links to Rfam database...	0.16	0.14	0.18	13	63474	65	16	43	6	80
TMR_00469	tmRNA links to Rfam database...	0.30	0.24	0.37	24	64555	48	10	31	7	76
TMR_00472	tmRNA links to Rfam database...	0.14	0.12	0.16	12	64547	67	8	53	6	85
TMR_00519	tmRNA links to Rfam database...	0.17	0.14	0.22	13	63130	51	10	37	4	82
TMR_00520	tmRNA links to Rfam database...	0.15	0.13	0.17	13	63113	77	10	54	13	86
TMR_00522	tmRNA links to Rfam database...	0.13	0.12	0.15	12	63108	76	8	62	6	85
TMR_00528	tmRNA links to Rfam database...	0.14	0.13	0.15	13	63105	77	16	56	5	84
TMR_00540	tmRNA links to Rfam database...	0.15	0.14	0.17	15	73447	81	11	63	7	89
TMR_00568	tmRNA links to Rfam database...	0.08	0.07	0.09	7	60647	74	16	56	2	92
TMR_00571	tmRNA links to Rfam database...	0.11	0.10	0.13	10	60650	68	16	50	2	89
TMR_00580	tmRNA links to Rfam database...	0.16	0.15	0.17	15	60640	72	15	56	1	85
TMR_00584	tmRNA links to Rfam database...	0.08	0.07	0.10	7	61007	69	11	50	8	90
TMR_00586	tmRNA links to Rfam database...	0.11	0.10	0.11	10	60988	77	24	53	0	87
TMR_00616	tmRNA links to Rfam database...	0.19	0.17	0.22	17	67083	64	12	49	3	82
TMR_00699	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67073	79	15	57	7	86
TMR_00702	tmRNA links to Rfam database...	0.16	0.15	0.17	15	67075	75	12	59	4	85
TMR_00703	tmRNA links to Rfam database...	0.16	0.15	0.18	15	67443	76	9	61	6	84

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]