CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(20)		RSpredict(seed)
MCC	0.568	>	0.035
Average MCC ± 95% Confidence Intervals	0.568 ± 0.024	>	0.040 ± 0.008
Sensitivity	0.427	>	0.022
Positive Predictive Value	0.758	>	0.059
Total TP	6063	>	306
Total TN	7811073	<	7813878
Total FP	2170	<	5131
Total FP CONTRA	194	<	419
Total FP INCONS	1745	<	4472
Total FP COMP	231	<	240
Total FN	8131	<	13888
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(20) and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(20) and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(20) and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(20) and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(20) and RSpredict(seed)).

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Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	6063
Total TN	7811073
Total FP	2170
Total FP CONTRA	194
Total FP INCONS	1745
Total FP COMP	231
Total FN	8131

Total Scores
MCC	0.568
Average MCC ± 95% Confidence Intervals	0.568 ± 0.024
Sensitivity	0.427
Positive Predictive Value	0.758
Nr of predictions	137

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.56	0.94	45	47230	4	0	3	1	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.34	0.76	55	108739	19	1	16	2	107
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00114	RNaseP_bact_b links to Rfam database...	0.46	0.39	0.56	30	45397	28	2	22	4	47
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00161	RNaseP_bact_b links to Rfam database...	0.68	0.56	0.83	49	53569	16	0	10	6	38
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00294	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.83	63	114405	14	4	9	1	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00305	RNaseP_bact_b links to Rfam database...	0.62	0.51	0.75	43	54558	21	1	13	7	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00321	RNaseP_bact_b links to Rfam database...	0.66	0.52	0.84	46	54560	18	1	8	9	42
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00427	RNaseP_nuc links to Rfam database...	0.42	0.43	0.41	20	40706	41	10	19	12	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.34	0.58	38	101409	33	1	27	5	73
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00602	Telomerase-vert links to Rfam database...	0.24	0.16	0.35	19	101421	41	2	33	6	97
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.90	1.00	91	45662	4	0	0	4	10
SRP_00011	Plant_SRP links to Rfam database...	0.63	0.52	0.77	54	46290	18	0	16	2	50
SRP_00015	Plant_SRP links to Rfam database...	0.73	0.63	0.86	62	46288	17	0	10	7	37
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37645	3	0	3	0	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	8	4	4	0	59
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.76	0.95	75	44771	7	0	4	3	24
SRP_00066	Metazoa_SRP links to Rfam database...	0.74	0.67	0.83	67	45370	17	5	9	3	33
SRP_00086	Metazoa_SRP links to Rfam database...	0.74	0.66	0.84	66	44174	13	7	6	0	34
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.68	0.84	69	44469	16	1	12	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.75	0.65	0.87	66	45375	12	1	9	2	36
SRP_00152	Plant_SRP links to Rfam database...	0.75	0.64	0.87	66	45677	14	5	5	4	37
SRP_00171	Metazoa_SRP links to Rfam database...	0.66	0.65	0.68	57	45367	35	6	21	8	31
SRP_00178	Plant_SRP links to Rfam database...	0.74	0.57	0.97	58	45693	3	0	2	1	44
SRP_00179	Plant_SRP links to Rfam database...	0.75	0.60	0.93	63	45988	9	0	5	4	42
SRP_00181	Plant_SRP links to Rfam database...	0.71	0.57	0.89	58	45991	9	0	7	2	44
SRP_00182	Plant_SRP links to Rfam database...	0.78	0.68	0.90	69	45979	9	0	8	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.53	0.79	53	45989	17	0	14	3	47
SRP_00188	Plant_SRP links to Rfam database...	0.69	0.59	0.81	47	31067	12	1	10	1	32
SRP_00228	Metazoa_SRP links to Rfam database...	0.75	0.68	0.81	65	45371	19	1	14	4	30
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.68	0.88	67	45074	14	0	9	5	31
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.59	0.42	0.83	38	35465	9	0	8	1	53
SRP_00347	Metazoa_SRP links to Rfam database...	0.72	0.65	0.79	62	46587	23	1	15	7	34
SRP_00368	Metazoa_SRP links to Rfam database...	0.78	0.70	0.87	69	43877	14	1	9	4	29

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Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	306
Total TN	7813878
Total FP	5131
Total FP CONTRA	419
Total FP INCONS	4472
Total FP COMP	240
Total FN	13888

Total Scores
MCC	0.035
Average MCC ± 95% Confidence Intervals	0.040 ± 0.008
Sensitivity	0.022
Positive Predictive Value	0.059
Nr of predictions	137

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2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	47872	20	0	19	1	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	59652	25	2	23	0	102
ASE_00018	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	80555	38	4	34	0	126
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82960	70	11	57	2	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84597	71	9	60	2	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70470	33	2	28	3	118
ASE_00040	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.10	4	78961	38	0	38	0	129
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47231	50	9	38	3	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45428	21	0	19	2	85
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37659	21	0	16	5	85
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108764	51	2	45	4	162
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45128	24	0	22	2	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	79
ASE_00080	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.11	4	71595	35	1	31	3	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	49746	21	0	20	1	93
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70479	25	5	16	4	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62453	28	2	26	0	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	53602	24	0	22	2	95
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88388	24	0	22	2	144
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63514	33	2	30	1	113
ASE_00104	RNaseP_bact_a links to Rfam database...	0.14	0.08	0.25	9	64225	27	0	27	0	110
ASE_00107	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	73119	26	2	24	0	119
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45410	43	6	35	2	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.18	4	54593	20	0	18	2	97
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62807	30	4	24	2	108
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	25	2	18	5	85
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63169	21	0	21	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	4	40449	19	0	17	2	77
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67119	42	0	42	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	7	70843	26	2	24	0	117
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57617	13	2	11	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53576	57	8	44	5	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.14	4	53273	29	2	22	5	89
ASE_00170	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48807	22	0	17	5	89
ASE_00174	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	61049	27	0	22	5	105
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44231	24	1	21	2	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51336	25	0	20	5	96
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84231	29	0	24	5	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	54590	21	0	21	0	98
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73514	28	0	22	6	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.09	4	78958	41	0	41	0	128
ASE_00190	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.07	2	45423	33	6	20	7	88
ASE_00212	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	4	93912	45	0	45	0	144
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56250	35	0	30	5	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48497	24	0	19	5	99
ASE_00217	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	40447	19	2	17	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.25	8	64588	24	2	22	0	109
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46947	26	0	24	2	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.08	0.05	0.15	4	42460	22	0	22	0	83
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64230	36	0	31	5	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43935	19	0	17	2	83
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	62447	26	2	24	0	106
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	8	74652	32	0	31	1	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51017	21	0	19	2	93
ASE_00267	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	45129	18	0	17	1	84
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72368	22	2	20	0	128
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53273	32	0	28	4	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	51978	26	0	21	5	94
ASE_00281	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.20	4	44531	18	0	16	2	84
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61733	43	4	39	0	107
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68972	39	4	30	5	122
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.19	8	81768	34	2	32	0	130
ASE_00294	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	4	114431	46	0	46	0	167
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52950	27	0	25	2	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	67502	26	0	22	4	109
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54563	57	10	42	5	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80136	66	14	50	2	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54560	57	11	44	2	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72715	59	11	45	3	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	81763	39	0	39	0	130
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75409	59	10	47	2	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.17	4	46032	22	0	20	2	81
ASE_00353	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	57938	33	2	26	5	103
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75427	39	1	38	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48184	19	0	17	2	87
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51340	22	0	20	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	54258	28	1	22	5	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58629	29	0	24	5	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	43051	18	0	16	2	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.12	3	51978	22	0	22	0	97
ASE_00376	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	56928	25	0	21	4	101
ASE_00382	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41884	19	0	17	2	80
ASE_00384	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	48493	21	1	18	2	88
ASE_00386	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	50380	20	0	19	1	92
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55917	33	2	26	5	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45729	20	1	19	0	85
ASE_00390	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	42174	19	0	17	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47875	22	0	20	2	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	46948	21	0	19	2	89
ASE_00395	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41595	17	0	17	0	80
ASE_00396	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	41596	18	0	16	2	79
ASE_00397	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54587	29	3	21	5	101
ASE_00398	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.11	4	55910	31	1	30	0	100
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	57944	27	0	22	5	102
ASE_00402	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	42466	18	0	16	2	81
ASE_00404	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	81
ASE_00406	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.18	4	48806	20	0	18	2	90
ASE_00411	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.20	4	49435	23	1	15	7	85
ASE_00412	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	58283	29	1	23	5	101
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77398	23	1	22	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54918	33	0	28	5	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	46944	25	0	23	2	90
ASE_00423	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	56920	25	2	23	0	101
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40744	11	5	6	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76610	28	1	25	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	46946	23	0	21	2	93
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79367	34	0	34	0	135
ASE_00448	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	3	64224	34	7	27	0	109
ASE_00451	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	70842	26	2	24	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101437	38	5	33	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99191	44	6	38	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101428	47	8	39	0	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45687	66	8	58	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46290	70	5	65	0	104
SRP_00015	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46288	72	10	62	0	99
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37604	71	8	63	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36246	69	9	60	0	89
SRP_00050	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44771	79	5	74	0	99
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	9	70	0	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44175	78	6	72	0	100
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44473	78	5	73	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	7	72	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45682	71	8	63	0	103
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45381	70	13	57	0	88
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45685	68	8	60	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	10	60	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	11	59	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	101
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	31055	70	13	57	0	79
SRP_00228	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45385	66	6	60	0	95
SRP_00317	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45079	71	8	63	0	98
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	35445	60	6	54	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46596	69	9	60	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43877	79	6	73	0	98

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]