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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

  4. Performance of PPfold(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for PETfold_pre2.0(20) & PPfold(seed) [.zip] - may take several seconds...


Overview

Metric PETfold_pre2.0(20) PPfold(seed)
MCC 0.919 > 0.847
Average MCC ± 95% Confidence Intervals 0.919 ± > 0.847 ±
Sensitivity 0.901 > 0.782
Positive Predictive Value 0.938 > 0.919
Total TP 91 > 79
Total TN 45959 < 45970
Total FP 15 < 17
Total FP CONTRA 0 = 0
Total FP INCONS 6 < 7
Total FP COMP 9 < 10
Total FN 10 < 22
P-value 0.0

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Performance plots


  1. Comparison of performance of PETfold_pre2.0(20) and PPfold(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PPfold(seed)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and PPfold(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and PPfold(seed)).

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Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP 91
Total TN 45959
Total FP 15
Total FP CONTRA 0
Total FP INCONS 6
Total FP COMP 9
Total FN 10
Total Scores
MCC 0.919
Average MCC ± 95% Confidence Intervals 0.919 ±
Sensitivity 0.901
Positive Predictive Value 0.938
Nr of predictions 1

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2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.92 0.90 0.94 91 45959 15 0 6 9 10

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Performance of PPfold(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for PPfold(seed)

Total Base Pair Counts
Total TP 79
Total TN 45970
Total FP 17
Total FP CONTRA 0
Total FP INCONS 7
Total FP COMP 10
Total FN 22
Total Scores
MCC 0.847
Average MCC ± 95% Confidence Intervals 0.847 ±
Sensitivity 0.782
Positive Predictive Value 0.919
Nr of predictions 1

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2. Individual counts for PPfold(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.85 0.78 0.92 79 45970 17 0 7 10 22

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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