CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	PETfold_pre2.0(seed)		RNAalifold(20)
MCC	0.769	>	0.673
Average MCC ± 95% Confidence Intervals	0.770 ± 0.013	>	0.674 ± 0.013
Sensitivity	0.693	>	0.550
Positive Predictive Value	0.854	>	0.825
Total TP	16538	>	13112
Total TN	13607547	<	13611017
Total FP	4389	>	3232
Total FP CONTRA	952	>	507
Total FP INCONS	1868	<	2269
Total FP COMP	1569	>	456
Total FN	7313	<	10739
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of PETfold_pre2.0(seed) and RNAalifold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RNAalifold(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RNAalifold(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RNAalifold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RNAalifold(20)).

^top

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	16538
Total TN	13607547
Total FP	4389
Total FP CONTRA	952
Total FP INCONS	1868
Total FP COMP	1569
Total FN	7313

Total Scores
MCC	0.769
Average MCC ± 95% Confidence Intervals	0.770 ± 0.013
Sensitivity	0.693
Positive Predictive Value	0.854
Nr of predictions	230

^top

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.81	0.82	65	47199	26	2	12	12	15
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00114	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	50	45377	39	1	23	15	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00161	RNaseP_bact_b links to Rfam database...	0.84	0.83	0.85	72	53543	26	1	12	13	15
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00305	RNaseP_bact_b links to Rfam database...	0.85	0.84	0.86	71	54532	27	1	11	15	14
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00321	RNaseP_bact_b links to Rfam database...	0.87	0.84	0.89	74	54532	24	1	8	15	14
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00427	RNaseP_nuc links to Rfam database...	0.85	0.78	0.92	36	40716	9	0	3	6	10
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	93	45659	10	0	1	9	8
SRP_00011	Plant_SRP links to Rfam database...	0.82	0.79	0.86	82	46265	21	0	13	8	22
SRP_00015	Plant_SRP links to Rfam database...	0.87	0.84	0.91	83	46269	20	0	8	12	16
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.97	0.98	96	44752	9	0	2	7	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	91	45358	15	0	2	13	9
SRP_00086	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	96	44155	9	0	2	7	4
SRP_00102	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	96	44453	9	0	2	7	5
SRP_00103	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	95	45354	10	0	2	8	7
SRP_00152	Plant_SRP links to Rfam database...	0.89	0.83	0.95	86	45662	17	0	5	12	17
SRP_00171	Metazoa_SRP links to Rfam database...	0.98	0.97	1.00	85	45366	21	0	0	21	3
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.86	0.96	88	45661	15	0	4	11	14
SRP_00179	Plant_SRP links to Rfam database...	0.90	0.85	0.96	89	45963	14	0	4	10	16
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.81	0.89	83	45963	21	0	10	11	19
SRP_00182	Plant_SRP links to Rfam database...	0.88	0.84	0.91	85	45963	17	0	8	9	16
SRP_00184	Plant_SRP links to Rfam database...	0.84	0.80	0.89	80	45966	23	0	10	13	20
SRP_00188	Plant_SRP links to Rfam database...	0.86	0.82	0.90	65	31053	14	0	7	7	14
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	91	45358	14	0	2	12	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.95	0.94	0.96	92	45054	13	0	4	9	6
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	89	46572	16	0	4	12	7
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	12	0	2	10	5
TMR_00017	tmRNA links to Rfam database...	0.72	0.62	0.84	63	67086	20	6	6	8	39
TMR_00018	tmRNA links to Rfam database...	0.65	0.59	0.72	54	64545	29	8	13	8	38
TMR_00038	tmRNA links to Rfam database...	0.64	0.52	0.79	57	71181	21	6	9	6	53
TMR_00042	tmRNA links to Rfam database...	0.68	0.60	0.78	59	62759	23	7	10	6	39
TMR_00046	tmRNA links to Rfam database...	0.47	0.42	0.53	40	62760	41	6	29	6	56
TMR_00048	tmRNA links to Rfam database...	0.68	0.61	0.76	58	64904	24	7	11	6	37
TMR_00080	tmRNA links to Rfam database...	0.55	0.49	0.63	47	70425	35	10	18	7	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.51	0.68	49	67824	32	9	14	9	47
TMR_00123	tmRNA links to Rfam database...	0.72	0.61	0.84	62	66356	21	7	5	9	39
TMR_00137	tmRNA links to Rfam database...	0.63	0.56	0.71	50	61005	32	8	12	12	39
TMR_00142	tmRNA links to Rfam database...	0.63	0.54	0.74	55	70802	27	4	15	8	47
TMR_00207	tmRNA links to Rfam database...	0.68	0.57	0.80	59	72316	24	7	8	9	44
TMR_00257	tmRNA links to Rfam database...	0.72	0.62	0.82	61	67087	22	7	6	9	37
TMR_00271	tmRNA links to Rfam database...	0.62	0.54	0.71	49	64192	32	7	13	12	42
TMR_00332	tmRNA links to Rfam database...	0.69	0.60	0.80	59	67087	25	6	9	10	40
TMR_00366	tmRNA links to Rfam database...	0.63	0.54	0.74	54	67823	28	3	16	9	46
TMR_00378	tmRNA links to Rfam database...	0.65	0.55	0.77	53	67827	26	3	13	10	44
TMR_00399	tmRNA links to Rfam database...	0.66	0.59	0.74	55	64906	26	9	10	7	39
TMR_00404	tmRNA links to Rfam database...	0.58	0.51	0.66	47	67457	35	6	18	11	45
TMR_00427	tmRNA links to Rfam database...	0.68	0.60	0.76	58	67452	26	11	7	8	39
TMR_00443	tmRNA links to Rfam database...	0.72	0.62	0.84	64	67085	19	6	6	7	40
TMR_00451	tmRNA links to Rfam database...	0.56	0.51	0.63	45	63474	37	13	14	10	44
TMR_00458	tmRNA links to Rfam database...	0.66	0.58	0.75	54	63474	29	8	10	11	39
TMR_00469	tmRNA links to Rfam database...	0.71	0.61	0.84	61	64547	20	6	6	8	39
TMR_00472	tmRNA links to Rfam database...	0.68	0.59	0.79	57	64548	23	7	8	8	40
TMR_00519	tmRNA links to Rfam database...	0.64	0.57	0.72	54	63115	29	9	12	8	41
TMR_00520	tmRNA links to Rfam database...	0.68	0.60	0.79	59	63115	25	7	9	9	40
TMR_00522	tmRNA links to Rfam database...	0.65	0.56	0.75	54	63118	28	6	12	10	43
TMR_00528	tmRNA links to Rfam database...	0.64	0.56	0.74	54	63117	28	6	13	9	43
TMR_00540	tmRNA links to Rfam database...	0.65	0.56	0.75	58	73459	25	9	10	6	46
TMR_00568	tmRNA links to Rfam database...	0.76	0.65	0.89	64	60654	17	1	7	9	35
TMR_00571	tmRNA links to Rfam database...	0.78	0.67	0.92	66	60654	16	1	5	10	33
TMR_00580	tmRNA links to Rfam database...	0.74	0.61	0.90	61	60658	17	2	5	10	39
TMR_00584	tmRNA links to Rfam database...	0.77	0.65	0.91	63	61006	14	2	4	8	34
TMR_00586	tmRNA links to Rfam database...	0.74	0.64	0.85	62	61002	19	5	6	8	35
TMR_00616	tmRNA links to Rfam database...	0.65	0.56	0.75	55	67088	24	8	10	6	44
TMR_00699	tmRNA links to Rfam database...	0.68	0.58	0.80	59	67087	23	6	9	8	43
TMR_00702	tmRNA links to Rfam database...	0.64	0.55	0.74	55	67087	27	3	16	8	45
TMR_00703	tmRNA links to Rfam database...	0.68	0.60	0.79	59	67453	23	7	9	7	40

^top

Performance of RNAalifold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	13112
Total TN	13611017
Total FP	3232
Total FP CONTRA	507
Total FP INCONS	2269
Total FP COMP	456
Total FN	10739

Total Scores
MCC	0.673
Average MCC ± 95% Confidence Intervals	0.674 ± 0.013
Sensitivity	0.550
Positive Predictive Value	0.825
Nr of predictions	230

^top

2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	55	47207	21	2	14	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00114	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.70	50	45380	31	0	21	10	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00161	RNaseP_bact_b links to Rfam database...	0.83	0.80	0.86	70	53547	17	0	11	6	17
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.79	53	54548	24	1	13	10	32
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.88	65	54541	20	1	8	11	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.69	0.65	0.73	30	40714	23	4	7	12	16
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	88	45665	3	0	0	3	13
SRP_00011	Plant_SRP links to Rfam database...	0.74	0.65	0.83	68	46278	17	0	14	3	36
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.72	0.86	71	46277	20	0	12	8	28
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.88	0.99	87	44762	4	0	1	3	12
SRP_00066	Metazoa_SRP links to Rfam database...	0.77	0.71	0.85	71	45367	17	2	11	4	29
SRP_00086	Metazoa_SRP links to Rfam database...	0.80	0.74	0.86	74	44167	14	5	7	2	26
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.68	0.87	69	44472	13	1	9	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.76	0.66	0.87	67	45374	12	1	9	2	35
SRP_00152	Plant_SRP links to Rfam database...	0.73	0.64	0.84	66	45674	16	5	8	3	37
SRP_00171	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	57	45364	38	6	24	8	31
SRP_00178	Plant_SRP links to Rfam database...	0.76	0.60	0.97	61	45690	3	0	2	1	41
SRP_00179	Plant_SRP links to Rfam database...	0.74	0.58	0.94	61	45991	7	0	4	3	44
SRP_00181	Plant_SRP links to Rfam database...	0.66	0.50	0.88	51	45998	9	0	7	2	51
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.83	0.94	84	45967	7	0	5	2	17
SRP_00184	Plant_SRP links to Rfam database...	0.82	0.74	0.90	74	45974	11	0	8	3	26
SRP_00188	Plant_SRP links to Rfam database...	0.78	0.71	0.86	56	31060	10	0	9	1	23
SRP_00228	Metazoa_SRP links to Rfam database...	0.80	0.72	0.89	68	45375	16	0	8	8	27
SRP_00317	Metazoa_SRP links to Rfam database...	0.91	0.85	0.98	83	45065	7	0	2	5	15
SRP_00347	Metazoa_SRP links to Rfam database...	0.79	0.71	0.87	68	46587	18	1	9	8	28
SRP_00368	Metazoa_SRP links to Rfam database...	0.80	0.73	0.88	72	43874	14	1	9	4	26
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of RNAalifold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]