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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of PPfold(20) - scored higher in this pairwise comparison

  4. Performance of Murlet(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for PPfold(20) & Murlet(seed) [.zip] - may take several seconds...


Overview

Metric PPfold(20) Murlet(seed)
MCC 0.886 > 0.588
Average MCC ± 95% Confidence Intervals 0.886 ± > 0.588 ±
Sensitivity 0.842 > 0.347
Positive Predictive Value 0.934 < 1.000
Total TP 85 > 35
Total TN 45965 < 46021
Total FP 13 > 1
Total FP CONTRA 0 = 0
Total FP INCONS 6 > 0
Total FP COMP 7 > 1
Total FN 16 < 66
P-value 0.0

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Performance plots


  1. Comparison of performance of PPfold(20) and Murlet(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PPfold(20) and Murlet(seed)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for PPfold(20) and Murlet(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PPfold(20) and Murlet(seed)).

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Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

Total Base Pair Counts
Total TP 85
Total TN 45965
Total FP 13
Total FP CONTRA 0
Total FP INCONS 6
Total FP COMP 7
Total FN 16
Total Scores
MCC 0.886
Average MCC ± 95% Confidence Intervals 0.886 ±
Sensitivity 0.842
Positive Predictive Value 0.934
Nr of predictions 1

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2. Individual counts for PPfold(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.89 0.84 0.93 85 45965 13 0 6 7 16

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Performance of Murlet(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 35
Total TN 46021
Total FP 1
Total FP CONTRA 0
Total FP INCONS 0
Total FP COMP 1
Total FN 66
Total Scores
MCC 0.588
Average MCC ± 95% Confidence Intervals 0.588 ±
Sensitivity 0.347
Positive Predictive Value 1.000
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.59 0.35 1.00 35 46021 1 0 0 1 66

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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