CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNASLOpt		RSpredict(20)
MCC	0.450	>	0.054
Average MCC ± 95% Confidence Intervals	0.448 ± 0.021	>	0.048 ± 0.013
Sensitivity	0.417	>	0.043
Positive Predictive Value	0.488	>	0.071
Total TP	9436	>	980
Total TN	12495280	<	12500823
Total FP	10575	<	13280
Total FP CONTRA	1165	<	1809
Total FP INCONS	8739	<	11008
Total FP COMP	671	>	463
Total FN	13215	<	21671
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNASLOpt and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNASLOpt and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNASLOpt and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNASLOpt and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNASLOpt and RSpredict(20)).

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Performance of RNASLOpt - scored higher in this pairwise comparison

1. Total counts & total scores for RNASLOpt

Total Base Pair Counts
Total TP	9436
Total TN	12495280
Total FP	10575
Total FP CONTRA	1165
Total FP INCONS	8739
Total FP COMP	671
Total FN	13215

Total Scores
MCC	0.450
Average MCC ± 95% Confidence Intervals	0.448 ± 0.021
Sensitivity	0.417
Positive Predictive Value	0.488
Nr of predictions	227

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2. Individual counts for RNASLOpt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	44	47807	44	2	42	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	64	57879	32	0	27	5	53
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	47511	35	8	26	1	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	40	59594	52	1	50	1	70
ASE_00012	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	54	73817	52	8	41	3	69
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	65	73820	35	3	32	0	61
ASE_00035	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	34	70406	64	4	56	4	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	26	59260	54	3	51	0	84
ASE_00038	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	37	53538	54	9	44	1	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	49	78896	63	5	53	5	84
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.62	49	57551	32	2	28	2	59
ASE_00044	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	69	54515	35	4	27	4	36
ASE_00045	RNaseP_bact_b links to Rfam database...	0.44	0.43	0.47	34	47205	40	7	32	1	46
ASE_00064	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	45372	43	4	34	5	48
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	23	0	18	5	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	61	67796	40	2	37	1	58
ASE_00077	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.29	20	45081	54	7	42	5	66
ASE_00078	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.46	29	43008	41	1	33	7	54
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	36	71530	65	6	59	0	87
ASE_00081	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.55	39	49699	32	4	28	0	58
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.51	45	70412	52	1	42	9	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	52	62392	43	5	32	6	58
ASE_00084	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	59	53549	24	2	18	4	40
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	55515	52	8	43	1	56
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	63453	42	5	37	0	62
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.57	56	64521	44	2	41	1	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	77	64160	24	5	19	0	42
ASE_00105	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.39	34	64174	56	6	47	3	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.45	45	73052	56	1	55	0	82
ASE_00114	RNaseP_bact_b links to Rfam database...	0.37	0.32	0.42	25	45392	46	4	30	12	52
ASE_00115	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	58	54520	42	6	31	5	43
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	32	60635	60	5	54	1	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	62744	27	1	24	2	42
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	35	38436	36	0	32	4	50
ASE_00125	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.62	46	39266	29	4	24	1	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	50	40396	24	5	19	0	32
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	60	53217	24	0	24	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	49	62742	44	2	42	0	62
ASE_00131	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	43	39275	28	0	22	6	42
ASE_00134	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.31	26	50318	59	7	52	0	69
ASE_00135	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.34	32	63097	66	3	58	5	77
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	53	48128	32	0	24	8	39
ASE_00137	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	59	48428	30	0	29	1	39
ASE_00138	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	32	40406	33	2	30	1	49
ASE_00140	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	59	70774	43	7	36	0	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	55	67051	56	4	51	1	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	56	70779	43	5	36	2	68
ASE_00153	RNaseP_nuc links to Rfam database...	0.49	0.53	0.46	39	57545	68	15	31	22	34
ASE_00161	RNaseP_bact_b links to Rfam database...	0.36	0.36	0.36	31	53541	56	12	44	0	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	38	53221	51	0	42	9	55
ASE_00165	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.56	48	52889	39	5	33	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	52	48748	29	2	26	1	41
ASE_00171	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	31	48440	45	3	42	0	63
ASE_00172	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	58906	37	6	30	1	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.45	41	60984	51	10	40	1	68
ASE_00175	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	70	59935	26	6	20	0	37
ASE_00179	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	47	44181	25	6	19	0	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	41	51274	45	7	38	0	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	37	57540	58	1	52	5	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	44	61332	49	3	46	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	36	54532	54	2	45	7	66
ASE_00185	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	76	73429	31	0	31	0	52
ASE_00186	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	76	78893	41	1	33	7	56
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.48	0.57	43	45375	39	1	32	6	47
ASE_00198	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	54	52560	41	4	32	5	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	59	46587	20	2	17	1	37
ASE_00214	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	60	56195	33	0	25	8	43
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.59	48	48435	34	3	30	1	51
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	50	39267	23	4	19	0	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	40404	47	6	38	3	68
ASE_00221	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.36	31	64535	54	1	53	0	86
ASE_00228	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	46895	44	8	34	2	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	54	42412	22	2	18	2	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	63	47812	21	1	19	1	33
ASE_00232	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.79	60	38427	16	7	9	0	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.49	48	75368	52	1	49	2	81
ASE_00238	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	43	64155	65	4	59	2	71
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	42	43892	23	1	21	1	45
ASE_00242	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	50	60980	46	2	43	1	62
ASE_00248	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	32	62388	62	1	60	1	82
ASE_00254	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	20	36787	54	3	46	5	62
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	61	74583	47	5	42	0	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	44	50965	31	3	28	0	53
ASE_00263	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	61	70399	40	4	36	0	59
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	19	45080	57	5	46	6	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	51	72280	59	7	52	0	77
ASE_00274	RNaseP_bact_a links to Rfam database...	0.25	0.22	0.28	23	55528	60	4	56	0	80
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.32	23	48132	50	8	42	0	68
ASE_00279	RNaseP_bact_a links to Rfam database...	0.18	0.16	0.21	16	53226	60	3	56	1	85
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	44	51927	32	5	27	0	54
ASE_00281	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	40	44483	33	0	28	5	48
ASE_00282	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	49	77712	54	7	47	0	78
ASE_00283	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	35	61689	53	8	44	1	72
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	50	58223	38	4	34	0	58
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	66	68913	33	0	27	6	56
ASE_00286	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	46599	48	1	43	4	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.23	0.33	24	54873	49	3	46	0	79
ASE_00297	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	51	52891	34	5	28	1	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.42	40	67433	56	5	50	1	73
ASE_00305	RNaseP_bact_b links to Rfam database...	0.56	0.56	0.56	48	54530	44	4	33	7	37
ASE_00321	RNaseP_bact_b links to Rfam database...	0.59	0.59	0.60	52	54528	39	3	32	4	36
ASE_00328	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	72676	39	5	30	4	52
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.51	0.59	59	75366	48	3	38	7	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.44	30	45988	38	7	31	0	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	41	62394	47	1	45	1	74
ASE_00353	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	46	57872	52	8	44	0	61
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	59	75360	48	2	45	1	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	56	48118	32	7	24	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	47	51276	38	6	31	1	47
ASE_00364	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.39	36	54193	56	3	53	0	69
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	39	58563	51	8	43	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	36	42999	41	4	32	5	50
ASE_00369	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	60	55850	35	3	32	0	47
ASE_00370	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	41837	26	1	24	1	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	51910	53	5	44	4	56
ASE_00374	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.31	22	44779	51	4	45	2	66
ASE_00376	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	56867	38	4	31	3	54
ASE_00377	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.59	54	57539	42	1	36	5	53
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.49	35	45984	45	2	35	8	54
ASE_00382	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	40	41835	34	2	28	4	44
ASE_00383	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	48	54529	38	1	37	0	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.35	0.30	0.40	28	48446	51	2	40	9	64
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	46	50319	43	6	32	5	50
ASE_00387	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	53	55856	41	2	34	5	51
ASE_00388	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.39	27	45683	51	2	41	8	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.18	13	42121	61	11	50	0	72
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	40	47821	41	3	31	7	53
ASE_00394	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	42	46890	42	7	32	3	51
ASE_00395	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	41	41545	37	3	27	7	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	34	41543	42	2	37	3	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.44	41	54522	52	3	49	0	64
ASE_00398	RNaseP_bact_a links to Rfam database...	0.29	0.26	0.33	27	55862	61	4	52	5	77
ASE_00400	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.66	61	57877	34	2	30	2	45
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	74	76921	33	4	29	0	52
ASE_00402	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	28	42416	44	5	37	2	57
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.67	60	55856	29	3	26	0	47
ASE_00404	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.29	21	42999	57	3	48	6	64
ASE_00406	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	44	48747	45	2	35	8	50
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	25	49377	56	10	43	3	64
ASE_00412	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.38	35	58220	56	10	46	0	70
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	39	44480	36	2	30	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.58	49	54861	39	2	34	3	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	57	77315	53	4	45	4	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	60	54850	37	6	30	1	43
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	46892	16	0	11	5	26
ASE_00423	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	55	56851	47	7	40	0	54
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40690	69	32	33	4	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	59	76529	51	3	45	3	66
ASE_00430	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	68	46893	15	0	10	5	29
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.45	48	79294	60	3	56	1	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	55	64172	34	3	31	0	57
ASE_00448	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.46	42	64169	55	10	40	5	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	50	70772	55	3	51	1	75
SRP_00006	Metazoa_SRP links to Rfam database...	0.17	0.16	0.19	16	45670	67	8	59	0	85
SRP_00011	Plant_SRP links to Rfam database...	0.17	0.16	0.19	17	46271	72	8	64	0	87
SRP_00015	Plant_SRP links to Rfam database...	0.28	0.25	0.31	25	46279	57	7	49	1	74
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.73	0.69	0.78	60	37598	18	2	15	1	27
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.40	0.36	0.45	32	36785	44	1	38	5	56
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.63	0.57	0.69	50	37056	22	1	21	0	37
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.11	0.10	0.13	9	36787	61	4	56	1	79
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.40	0.37	0.44	33	36240	42	4	38	0	56
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.37	0.36	0.39	31	36506	49	10	38	1	56
SRP_00050	Metazoa_SRP links to Rfam database...	0.60	0.54	0.68	53	44772	27	0	25	2	46
SRP_00066	Metazoa_SRP links to Rfam database...	0.16	0.15	0.17	15	45361	75	6	69	0	85
SRP_00086	Metazoa_SRP links to Rfam database...	0.53	0.49	0.57	49	44167	40	1	36	3	51
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.77	0.73	0.82	65	34112	14	1	13	0	24
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.84	0.76	0.94	68	35706	4	0	4	0	22
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.79	0.74	0.85	67	35432	15	1	11	3	23
SRP_00102	Metazoa_SRP links to Rfam database...	0.41	0.38	0.46	38	44468	45	4	41	0	63
SRP_00103	Metazoa_SRP links to Rfam database...	0.78	0.74	0.82	75	45360	16	1	15	0	27
SRP_00152	Plant_SRP links to Rfam database...	0.23	0.21	0.26	22	45667	64	10	54	0	81
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45358	93	16	77	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.64	0.59	0.70	53	38150	25	4	19	2	37
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.68	0.65	0.72	56	38703	24	6	16	2	30
SRP_00178	Plant_SRP links to Rfam database...	0.11	0.10	0.12	10	45669	74	1	73	0	92
SRP_00179	Plant_SRP links to Rfam database...	0.65	0.59	0.72	62	45970	27	3	21	3	43
SRP_00181	Plant_SRP links to Rfam database...	0.08	0.07	0.09	7	45975	74	2	72	0	95
SRP_00182	Plant_SRP links to Rfam database...	0.54	0.51	0.57	52	45965	39	11	28	0	49
SRP_00184	Plant_SRP links to Rfam database...	0.04	0.04	0.05	4	45981	73	3	68	2	96
SRP_00188	Plant_SRP links to Rfam database...	0.18	0.18	0.20	14	31054	57	9	48	0	65
SRP_00228	Metazoa_SRP links to Rfam database...	0.69	0.62	0.77	59	45374	24	2	16	6	36
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.71	52	36242	23	0	21	2	34
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.14	0.14	0.15	12	36233	70	11	59	0	76
SRP_00317	Metazoa_SRP links to Rfam database...	0.20	0.19	0.21	19	45061	72	7	63	2	79
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.19	0.26	0.14	10	35176	76	24	35	17	29
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.71	0.80	65	35430	17	2	14	1	26
SRP_00347	Metazoa_SRP links to Rfam database...	0.46	0.44	0.49	42	46580	45	4	39	2	54
SRP_00368	Metazoa_SRP links to Rfam database...	0.76	0.68	0.85	67	43877	14	1	11	2	31
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.32	28	67073	64	7	53	4	74
TMR_00018	tmRNA links to Rfam database...	0.36	0.36	0.36	33	64528	61	12	47	2	59
TMR_00038	tmRNA links to Rfam database...	0.30	0.28	0.32	31	71155	71	3	64	4	79
TMR_00042	tmRNA links to Rfam database...	0.30	0.30	0.31	29	62742	66	10	54	2	69
TMR_00046	tmRNA links to Rfam database...	0.40	0.40	0.41	38	62742	59	10	45	4	58
TMR_00048	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64887	48	15	28	5	45
TMR_00080	tmRNA links to Rfam database...	0.26	0.27	0.26	26	70399	75	26	49	0	70
TMR_00082	tmRNA links to Rfam database...	0.57	0.54	0.59	52	67808	39	12	24	3	44
TMR_00123	tmRNA links to Rfam database...	0.43	0.39	0.47	39	66347	49	5	39	5	62
TMR_00137	tmRNA links to Rfam database...	0.18	0.19	0.18	17	60980	79	17	61	1	72
TMR_00142	tmRNA links to Rfam database...	0.55	0.52	0.58	53	70785	47	8	30	9	49
TMR_00207	tmRNA links to Rfam database...	0.10	0.10	0.11	10	72296	88	6	78	4	93
TMR_00257	tmRNA links to Rfam database...	0.26	0.24	0.28	24	67074	68	9	54	5	74
TMR_00271	tmRNA links to Rfam database...	0.41	0.38	0.43	35	64180	53	15	31	7	56
TMR_00332	tmRNA links to Rfam database...	0.31	0.28	0.34	28	67079	58	9	45	4	71
TMR_00366	tmRNA links to Rfam database...	0.44	0.42	0.47	42	67806	52	11	37	4	58
TMR_00378	tmRNA links to Rfam database...	0.42	0.40	0.44	39	67808	53	12	37	4	58
TMR_00399	tmRNA links to Rfam database...	0.31	0.30	0.32	28	64892	65	13	47	5	66
TMR_00404	tmRNA links to Rfam database...	0.35	0.37	0.34	34	67428	74	11	55	8	58
TMR_00427	tmRNA links to Rfam database...	0.38	0.37	0.40	36	67438	61	8	46	7	61
TMR_00443	tmRNA links to Rfam database...	0.32	0.28	0.36	29	67080	58	5	47	6	75
TMR_00451	tmRNA links to Rfam database...	0.25	0.22	0.28	20	63475	55	7	44	4	69
TMR_00458	tmRNA links to Rfam database...	0.26	0.25	0.28	23	63464	69	8	51	10	70
TMR_00469	tmRNA links to Rfam database...	0.34	0.33	0.35	33	64525	62	10	52	0	67
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64522	77	18	57	2	74
TMR_00519	tmRNA links to Rfam database...	0.24	0.24	0.24	23	63095	82	13	59	10	72
TMR_00520	tmRNA links to Rfam database...	0.31	0.29	0.33	29	63102	70	5	54	11	70
TMR_00522	tmRNA links to Rfam database...	0.25	0.24	0.27	23	63104	74	11	52	11	74
TMR_00528	tmRNA links to Rfam database...	0.13	0.12	0.14	12	63102	86	8	68	10	85
TMR_00540	tmRNA links to Rfam database...	0.44	0.42	0.45	44	73438	55	15	39	1	60
TMR_00568	tmRNA links to Rfam database...	0.33	0.31	0.34	31	60635	66	9	51	6	68
TMR_00571	tmRNA links to Rfam database...	0.35	0.33	0.38	33	60639	62	8	46	8	66
TMR_00580	tmRNA links to Rfam database...	0.37	0.34	0.40	34	60642	55	8	42	5	66
TMR_00584	tmRNA links to Rfam database...	0.46	0.43	0.48	42	60988	52	5	40	7	55
TMR_00586	tmRNA links to Rfam database...	0.46	0.38	0.55	37	61008	35	1	29	5	60
TMR_00616	tmRNA links to Rfam database...	0.44	0.43	0.46	43	67067	56	8	43	5	56
TMR_00699	tmRNA links to Rfam database...	0.52	0.45	0.61	46	67085	34	0	30	4	56
TMR_00702	tmRNA links to Rfam database...	0.41	0.38	0.44	38	67074	56	7	42	7	62
TMR_00703	tmRNA links to Rfam database...	0.26	0.24	0.29	24	67444	64	5	55	4	75

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	980
Total TN	12500823
Total FP	13280
Total FP CONTRA	1809
Total FP INCONS	11008
Total FP COMP	463
Total FN	21671

Total Scores
MCC	0.054
Average MCC ± 95% Confidence Intervals	0.048 ± 0.013
Sensitivity	0.043
Positive Predictive Value	0.071
Nr of predictions	227

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	47840	54	12	42	0	96
ASE_00005	RNaseP_bact_a links to Rfam database...	0.13	0.09	0.21	10	57923	37	1	36	0	107
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47543	43	3	40	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.05	0.04	0.07	4	59624	57	13	44	0	106
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73867	57	5	48	4	123
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73854	74	5	61	8	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70427	79	8	65	6	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59294	48	3	43	2	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53584	44	5	39	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78969	34	7	27	0	133
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57602	28	2	26	0	108
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54577	38	8	30	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47218	60	6	54	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45395	56	6	50	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37625	53	1	49	3	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	7	67854	37	2	33	2	112
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45116	34	1	33	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	42	5	37	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71576	59	1	54	4	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49718	52	3	49	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	70455	51	5	39	7	115
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62427	56	5	49	2	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53583	45	2	43	0	99
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55546	65	8	57	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63491	55	9	46	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64563	47	5	42	0	110
ASE_00104	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64206	47	8	37	2	109
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64219	45	1	41	3	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	73084	65	2	63	0	123
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45389	62	20	42	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54548	68	7	60	1	101
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60672	56	7	47	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.04	2	62788	52	3	42	7	106
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	22	2	18	2	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39309	35	1	30	4	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40438	35	3	29	3	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53258	43	4	39	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62779	56	5	51	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39274	67	8	58	1	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50347	58	3	53	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63140	50	4	46	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48162	49	0	43	6	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48462	54	8	46	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40422	50	3	45	2	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70802	81	4	70	7	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67100	61	5	56	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.07	4	70819	53	5	48	0	120
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57594	47	12	24	11	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53550	82	16	62	4	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53255	51	11	35	5	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52920	55	14	41	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48767	61	5	56	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48468	50	7	41	2	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58942	55	7	47	1	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61015	60	7	53	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59976	55	5	50	0	107
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44222	32	6	25	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51312	49	6	42	1	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57585	47	12	33	2	106
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61379	48	2	44	2	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	49	8	40	1	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73478	58	8	50	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78937	66	12	54	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45411	41	7	33	1	90
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52603	48	3	44	1	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46622	45	4	39	2	96
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56231	49	11	38	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48444	76	3	69	4	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39302	38	11	27	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.09	4	40423	43	5	38	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.18	10	64564	47	10	36	1	107
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46906	70	8	57	5	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42431	55	12	43	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47852	43	5	38	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38461	45	2	40	3	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75400	71	6	60	5	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64206	57	6	49	2	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43916	45	8	32	5	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.16	8	61026	43	8	33	2	104
ASE_00248	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.17	10	62421	51	12	38	1	104
ASE_00254	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	36817	38	6	32	0	81
ASE_00255	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.12	8	74622	65	5	56	4	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50989	51	4	47	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.02	0.02	0.03	2	70422	76	10	66	0	118
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45099	51	10	41	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72338	52	5	47	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55569	43	4	38	1	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48169	36	8	28	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53256	47	9	36	2	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51946	57	9	48	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44508	43	4	39	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77748	67	6	61	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61715	70	4	57	9	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58255	56	9	47	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68937	72	9	60	3	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46631	36	6	28	2	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	45	5	39	1	103
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52927	52	2	46	4	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67482	46	9	37	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54535	87	12	68	7	85
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54540	79	9	66	4	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72698	75	17	56	2	112
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75387	79	10	69	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46000	56	11	45	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.15	9	62422	50	15	35	0	106
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57915	55	1	54	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75396	71	4	66	1	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48153	52	5	47	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51317	45	8	35	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54241	47	6	38	3	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58603	56	10	40	6	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	43031	42	9	30	3	85
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55900	45	4	41	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41869	37	3	33	1	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51938	65	11	54	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44801	50	6	43	1	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56902	53	6	45	2	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57581	49	2	47	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46010	46	12	34	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41857	50	15	33	2	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54575	40	8	32	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48471	45	11	34	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50354	49	7	42	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	9	43	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45709	45	6	38	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.06	0.05	0.08	4	42143	48	8	40	0	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47858	37	5	32	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46928	46	4	39	3	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41569	48	7	40	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41584	33	1	31	1	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	48	3	45	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55878	67	13	54	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57912	63	3	55	5	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	76968	59	4	55	0	125
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42449	37	7	30	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	4	48	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	44	8	34	2	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48778	52	7	43	2	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49418	38	7	30	1	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58265	47	6	40	1	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44496	58	11	44	3	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	44	5	39	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77376	46	6	39	1	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54894	52	14	38	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.18	7	46933	31	5	26	0	87
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.09	0.21	10	56905	39	2	36	1	99
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40707	50	19	29	2	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76592	46	8	36	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46931	41	3	37	1	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79324	77	6	71	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64199	62	9	53	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64203	61	9	49	3	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.11	8	70803	65	15	50	0	117
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45659	94	11	83	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.18	0.16	0.20	17	46277	69	3	63	3	87
SRP_00015	Plant_SRP links to Rfam database...	0.21	0.20	0.22	20	46271	70	10	59	1	79
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37609	66	11	55	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36784	72	7	65	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37054	74	10	64	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36783	73	14	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36244	71	10	61	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36511	74	11	63	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.07	0.07	0.07	7	44756	87	10	77	0	92
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45356	96	4	91	1	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.37	0.36	0.38	36	44158	62	1	58	3	64
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34123	64	3	61	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35711	67	15	52	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35434	71	4	67	0	84
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44458	93	6	87	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	2	96	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.20	0.18	0.21	19	45663	73	7	64	2	84
SRP_00171	Metazoa_SRP links to Rfam database...	0.54	0.55	0.55	48	45363	51	4	36	11	40
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38154	73	8	64	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38706	76	10	65	1	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45670	83	3	80	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45966	90	5	85	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	6	80	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.24	0.23	0.26	23	45968	67	5	60	2	78
SRP_00184	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45972	70	6	60	4	82
SRP_00188	Plant_SRP links to Rfam database...	0.04	0.04	0.05	3	31059	63	7	56	0	76
SRP_00228	Metazoa_SRP links to Rfam database...	0.06	0.06	0.06	6	45357	89	1	87	1	89
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36238	71	6	65	0	80
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36239	70	10	60	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	79	45061	18	1	9	8	19
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35205	40	14	26	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35432	73	12	61	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46569	96	8	88	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43864	92	8	84	0	98
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.31	28	67072	62	13	48	1	74
TMR_00018	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64538	71	18	50	3	78
TMR_00038	tmRNA links to Rfam database...	0.30	0.25	0.36	27	71178	52	8	40	4	83
TMR_00042	tmRNA links to Rfam database...	0.17	0.15	0.19	15	62757	64	10	53	1	83
TMR_00046	tmRNA links to Rfam database...	0.08	0.07	0.09	7	62756	76	8	64	4	89
TMR_00048	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64899	73	7	60	6	81
TMR_00080	tmRNA links to Rfam database...	0.16	0.15	0.17	14	70418	78	22	46	10	82
TMR_00082	tmRNA links to Rfam database...	0.16	0.15	0.18	14	67818	73	15	49	9	82
TMR_00123	tmRNA links to Rfam database...	0.19	0.17	0.21	17	66350	70	15	48	7	84
TMR_00137	tmRNA links to Rfam database...	0.26	0.25	0.28	22	60995	61	14	44	3	67
TMR_00142	tmRNA links to Rfam database...	0.08	0.07	0.09	7	70797	78	12	60	6	95
TMR_00207	tmRNA links to Rfam database...	0.15	0.14	0.16	14	72304	74	15	57	2	89
TMR_00257	tmRNA links to Rfam database...	0.18	0.15	0.21	15	67091	65	14	41	10	83
TMR_00271	tmRNA links to Rfam database...	0.09	0.08	0.11	7	64195	67	9	50	8	84
TMR_00332	tmRNA links to Rfam database...	0.15	0.14	0.16	14	67071	82	19	57	6	85
TMR_00366	tmRNA links to Rfam database...	0.07	0.07	0.08	7	67809	85	16	64	5	93
TMR_00378	tmRNA links to Rfam database...	0.08	0.07	0.08	7	67811	85	10	68	7	90
TMR_00399	tmRNA links to Rfam database...	0.19	0.16	0.24	15	64917	50	11	37	2	79
TMR_00404	tmRNA links to Rfam database...	0.14	0.13	0.15	12	67446	70	20	50	0	80
TMR_00427	tmRNA links to Rfam database...	0.15	0.13	0.18	13	67456	63	12	47	4	84
TMR_00443	tmRNA links to Rfam database...	0.16	0.14	0.19	15	67081	70	14	51	5	89
TMR_00451	tmRNA links to Rfam database...	0.17	0.17	0.18	15	63461	73	22	48	3	74
TMR_00458	tmRNA links to Rfam database...	0.16	0.14	0.18	13	63474	65	16	43	6	80
TMR_00469	tmRNA links to Rfam database...	0.30	0.24	0.37	24	64555	48	10	31	7	76
TMR_00472	tmRNA links to Rfam database...	0.14	0.12	0.16	12	64547	67	8	53	6	85
TMR_00519	tmRNA links to Rfam database...	0.17	0.14	0.22	13	63130	51	10	37	4	82
TMR_00520	tmRNA links to Rfam database...	0.15	0.13	0.17	13	63113	77	10	54	13	86
TMR_00522	tmRNA links to Rfam database...	0.13	0.12	0.15	12	63108	76	8	62	6	85
TMR_00528	tmRNA links to Rfam database...	0.14	0.13	0.15	13	63105	77	16	56	5	84
TMR_00540	tmRNA links to Rfam database...	0.15	0.14	0.17	15	73447	81	11	63	7	89
TMR_00568	tmRNA links to Rfam database...	0.08	0.07	0.09	7	60647	74	16	56	2	92
TMR_00571	tmRNA links to Rfam database...	0.11	0.10	0.13	10	60650	68	16	50	2	89
TMR_00580	tmRNA links to Rfam database...	0.16	0.15	0.17	15	60640	72	15	56	1	85
TMR_00584	tmRNA links to Rfam database...	0.08	0.07	0.10	7	61007	69	11	50	8	90
TMR_00586	tmRNA links to Rfam database...	0.11	0.10	0.11	10	60988	77	24	53	0	87
TMR_00616	tmRNA links to Rfam database...	0.19	0.17	0.22	17	67083	64	12	49	3	82
TMR_00699	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67073	79	15	57	7	86
TMR_00702	tmRNA links to Rfam database...	0.16	0.15	0.17	15	67075	75	12	59	4	85
TMR_00703	tmRNA links to Rfam database...	0.16	0.15	0.18	15	67443	76	9	61	6	84

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNASLOpt - scored higher in this pairwise comparison

1. Total counts & total scores for RNASLOpt

2. Individual counts for RNASLOpt [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]