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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of RNASampler(20) - scored higher in this pairwise comparison

  4. Performance of Murlet(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for RNASampler(20) & Murlet(seed) [.zip] - may take several seconds...


Overview

Metric RNASampler(20) Murlet(seed)
MCC 0.780 > 0.588
Average MCC ± 95% Confidence Intervals 0.780 ± > 0.588 ±
Sensitivity 0.663 > 0.347
Positive Predictive Value 0.918 < 1.000
Total TP 67 > 35
Total TN 45983 < 46021
Total FP 6 > 1
Total FP CONTRA 0 = 0
Total FP INCONS 6 > 0
Total FP COMP 0 < 1
Total FN 34 < 66
P-value 0.0

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Performance plots


  1. Comparison of performance of RNASampler(20) and Murlet(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNASampler(20) and Murlet(seed)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for RNASampler(20) and Murlet(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNASampler(20) and Murlet(seed)).

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Performance of RNASampler(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNASampler(20)

Total Base Pair Counts
Total TP 67
Total TN 45983
Total FP 6
Total FP CONTRA 0
Total FP INCONS 6
Total FP COMP 0
Total FN 34
Total Scores
MCC 0.780
Average MCC ± 95% Confidence Intervals 0.780 ±
Sensitivity 0.663
Positive Predictive Value 0.918
Nr of predictions 1

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2. Individual counts for RNASampler(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.78 0.66 0.92 67 45983 6 0 6 0 34

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Performance of Murlet(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 35
Total TN 46021
Total FP 1
Total FP CONTRA 0
Total FP INCONS 0
Total FP COMP 1
Total FN 66
Total Scores
MCC 0.588
Average MCC ± 95% Confidence Intervals 0.588 ±
Sensitivity 0.347
Positive Predictive Value 1.000
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
SRP_00182

Plant_SRP links to Rfam database...

0.59 0.35 1.00 35 46021 1 0 0 1 66

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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