CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		CentroidFold
MCC	0.668	>	0.621
Average MCC ± 95% Confidence Intervals	0.667 ± 0.013	>	0.617 ± 0.020
Sensitivity	0.540	<	0.557
Positive Predictive Value	0.827	>	0.694
Total TP	13563	<	14003
Total TN	14157792	>	14154005
Total FP	3299	<	7107
Total FP CONTRA	522	<	902
Total FP INCONS	2316	<	5283
Total FP COMP	461	<	922
Total FN	11563	>	11123
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and CentroidFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and CentroidFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and CentroidFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and CentroidFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and CentroidFold).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	13563
Total TN	14157792
Total FP	3299
Total FP CONTRA	522
Total FP INCONS	2316
Total FP COMP	461
Total FN	11563

Total Scores
MCC	0.668
Average MCC ± 95% Confidence Intervals	0.667 ± 0.013
Sensitivity	0.540
Positive Predictive Value	0.827
Nr of predictions	245

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	55	47207	21	2	14	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00114	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.70	50	45380	31	0	21	10	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00161	RNaseP_bact_b links to Rfam database...	0.83	0.80	0.86	70	53547	17	0	11	6	17
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.79	53	54548	24	1	13	10	32
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.88	65	54541	20	1	8	11	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.69	0.65	0.73	30	40714	23	4	7	12	16
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	88	45665	3	0	0	3	13
SRP_00011	Plant_SRP links to Rfam database...	0.74	0.65	0.83	68	46278	17	0	14	3	36
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.72	0.86	71	46277	20	0	12	8	28
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	9	4	4	1	59
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.60	0.39	0.92	34	37091	3	0	3	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.34	0.79	30	36818	8	4	4	0	58
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.62	0.44	0.89	39	36271	6	0	5	1	50
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36559	0	0	0	0	61
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.88	0.99	87	44762	4	0	1	3	12
SRP_00066	Metazoa_SRP links to Rfam database...	0.77	0.71	0.85	71	45367	17	2	11	4	29
SRP_00086	Metazoa_SRP links to Rfam database...	0.80	0.74	0.86	74	44167	14	5	7	2	26
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.57	0.37	0.87	33	34153	5	0	5	0	56
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.50	0.31	0.80	28	35743	7	3	4	0	62
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.32	0.94	29	35480	2	0	2	0	61
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.68	0.87	69	44472	13	1	9	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.76	0.66	0.87	67	45374	12	1	9	2	35
SRP_00152	Plant_SRP links to Rfam database...	0.73	0.64	0.84	66	45674	16	5	8	3	37
SRP_00171	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	57	45364	38	6	24	8	31
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.55	0.36	0.86	32	38189	6	0	5	1	58
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	38755	0	0	0	0	60
SRP_00178	Plant_SRP links to Rfam database...	0.76	0.60	0.97	61	45690	3	0	2	1	41
SRP_00179	Plant_SRP links to Rfam database...	0.74	0.58	0.94	61	45991	7	0	4	3	44
SRP_00181	Plant_SRP links to Rfam database...	0.66	0.50	0.88	51	45998	9	0	7	2	51
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.83	0.94	84	45967	7	0	5	2	17
SRP_00184	Plant_SRP links to Rfam database...	0.82	0.74	0.90	74	45974	11	0	8	3	26
SRP_00188	Plant_SRP links to Rfam database...	0.78	0.71	0.86	56	31060	10	0	9	1	23
SRP_00228	Metazoa_SRP links to Rfam database...	0.80	0.72	0.89	68	45375	16	0	8	8	27
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.54	0.33	0.90	28	36284	4	0	3	1	58
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.48	0.32	0.74	28	36277	10	4	6	0	60
SRP_00317	Metazoa_SRP links to Rfam database...	0.91	0.85	0.98	83	45065	7	0	2	5	15
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.53	0.28	1.00	11	35234	0	0	0	0	28
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.53	0.94	48	35460	4	0	3	1	43
SRP_00347	Metazoa_SRP links to Rfam database...	0.79	0.71	0.87	68	46587	18	1	9	8	28
SRP_00368	Metazoa_SRP links to Rfam database...	0.80	0.73	0.88	72	43874	14	1	9	4	26
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	14003
Total TN	14154005
Total FP	7107
Total FP CONTRA	902
Total FP INCONS	5283
Total FP COMP	922
Total FN	11123

Total Scores
MCC	0.621
Average MCC ± 95% Confidence Intervals	0.617 ± 0.020
Sensitivity	0.557
Positive Predictive Value	0.694
Nr of predictions	245

^top

2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	61	47812	22	9	13	0	36
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	63	57892	15	0	15	0	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	45	47505	39	6	30	3	48
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	51	59612	25	0	22	3	59
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.44	0.68	54	73840	32	1	25	6	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.74	78	80495	29	0	28	1	56
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	75	73824	22	1	20	1	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	96	104077	29	2	21	6	64
ASE_00022	RNaseP_bact_b links to Rfam database...	0.32	0.27	0.38	34	82939	60	0	55	5	90
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.65	0.76	82	84558	34	4	22	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.50	38	70424	41	2	36	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	38	59283	19	0	19	0	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.65	47	53556	27	4	21	2	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	18	78895	94	5	85	4	115
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.86	57	57564	12	0	9	3	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	77	89983	43	1	39	3	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	70	54518	32	3	24	5	35
ASE_00045	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.73	43	47219	24	5	11	8	37
ASE_00064	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	51	45385	25	1	14	10	38
ASE_00068	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	45	37623	7	0	7	0	40
ASE_00074	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	58	67789	51	4	45	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	109	108684	24	2	16	6	53
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.34	0.69	29	45108	14	3	10	1	57
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	49	43015	11	0	7	4	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	61	71549	25	1	20	4	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	56	49688	27	5	21	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	80	70412	18	1	7	10	36
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	70	62399	17	0	12	5	40
ASE_00084	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	65	53554	11	2	7	2	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	101	88287	23	2	20	1	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	60	55517	39	4	30	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	84	63455	10	1	6	3	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	56	64519	45	5	40	0	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.84	81	64164	17	2	14	1	38
ASE_00105	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.65	53	64180	31	4	24	3	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	87	73052	15	1	13	1	40
ASE_00114	RNaseP_bact_b links to Rfam database...	0.54	0.43	0.67	33	45402	28	0	16	12	44
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.75	69	54523	31	4	19	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	60	60646	21	2	18	1	42
ASE_00119	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	78	62734	26	2	21	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	44	38435	28	1	23	4	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.94	58	39278	7	1	3	3	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	46	40400	31	3	21	7	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	60	53232	12	1	8	3	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	71	62748	19	0	16	3	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	54	39280	12	1	5	6	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.56	36	50339	28	2	26	0	59
ASE_00135	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	56	63110	31	1	23	7	53
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.70	49	48135	30	1	20	9	43
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	73	48431	13	3	9	1	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.77	40	40418	13	4	8	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	77	70786	14	3	10	1	48
ASE_00142	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	70	67058	37	4	29	4	52
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	59	70786	32	6	25	1	65
ASE_00153	RNaseP_nuc links to Rfam database...	0.46	0.42	0.51	31	57569	56	5	25	26	42
ASE_00161	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.49	38	53550	44	7	33	4	49
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.36	29	53221	60	4	47	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	70	52895	11	1	9	1	31
ASE_00170	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.78	57	48755	16	3	13	0	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	64	48436	16	3	13	0	30
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	76	58911	10	2	7	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	60	60990	26	6	19	1	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	59942	55	1	52	2	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	50	44189	15	3	11	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	62	51292	11	0	6	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	49	57541	41	2	38	1	57
ASE_00182	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	86	84144	25	1	24	0	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	77	61325	32	0	23	9	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	78	54519	20	3	15	2	24
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	82	73436	21	1	17	3	46
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	28	2	18	8	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.92	47	45400	8	0	4	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.73	84	89138	37	2	29	6	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	64	52567	20	4	15	1	38
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	68	46583	18	4	10	4	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.79	93	93844	29	2	22	5	55
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	78	56187	20	3	12	5	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.63	49	48438	30	2	27	1	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	47	39264	29	7	22	0	35
ASE_00217	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.55	34	40408	29	2	26	1	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	67	64542	14	0	11	3	50
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	56	46901	16	7	7	2	30
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	58	42421	7	1	6	0	29
ASE_00231	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	47818	9	1	7	1	27
ASE_00232	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	54	38426	23	10	13	0	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	61	75378	30	1	26	3	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.77	60	64183	19	0	18	1	54
ASE_00241	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	55	43896	6	0	5	1	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	74	60985	19	4	12	3	38
ASE_00248	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	62401	17	1	15	1	50
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	60	36787	15	4	5	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	77	74586	29	3	25	1	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	71	50959	12	0	10	2	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	65	70389	46	3	43	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	44	45087	23	1	18	4	44
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	86	72278	27	3	23	1	42
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	43	55535	33	3	30	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	51	48126	28	5	23	0	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	53219	32	3	29	0	51
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	54	51933	18	2	14	2	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44484	18	1	11	6	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	58	77710	47	8	39	0	69
ASE_00283	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	67	61688	22	4	17	1	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	64	58222	27	5	20	2	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.88	92	68902	17	3	9	5	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	59	46594	16	1	11	4	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	62	54865	20	1	18	1	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	72	81706	34	1	31	2	66
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	111	114344	28	1	25	2	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.63	76	91686	45	4	40	1	69
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	66	52890	20	3	16	1	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	31	67435	65	7	55	3	82
ASE_00305	RNaseP_bact_b links to Rfam database...	0.73	0.61	0.87	52	54555	13	0	8	5	33
ASE_00318	RNaseP_bact_b links to Rfam database...	0.58	0.51	0.67	60	80111	33	9	20	4	58
ASE_00321	RNaseP_bact_b links to Rfam database...	0.67	0.55	0.83	48	54557	12	0	10	2	40
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	68	72695	13	1	7	5	44
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	72	81687	53	2	49	2	66
ASE_00335	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.72	63	75379	29	2	22	5	53
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	45984	39	4	31	4	48
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	74	62388	20	1	18	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	77	57881	14	1	11	2	30
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	63	75366	40	4	33	3	64
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	53	48127	27	1	24	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	59	51294	13	1	6	6	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	68	54204	17	0	13	4	37
ASE_00366	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.51	39	58577	37	5	32	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42993	43	6	32	5	46
ASE_00369	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	67	55865	13	1	12	0	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	56	41829	22	2	18	2	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51917	28	4	18	6	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	63	44770	17	2	15	0	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	64	56866	25	4	19	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	75	57542	19	3	10	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	50	45982	30	3	21	6	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.65	45	41836	27	5	19	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.84	73	54528	17	1	13	3	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	67	48435	18	1	13	4	25
ASE_00386	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	63	50317	29	1	22	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	66	55860	20	1	18	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.82	54	45687	13	0	12	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	47	42117	32	7	24	1	38
ASE_00393	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	61	47821	19	1	12	6	32
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	74	46885	14	3	9	2	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	56	41544	18	1	15	2	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	45	41543	29	2	26	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	73	54524	19	3	15	1	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	61	55862	25	1	21	3	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	62	57891	18	1	16	1	44
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	76	76920	33	4	28	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	53	42423	11	1	9	1	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.59	40	55877	31	0	28	3	67
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	44	43012	16	1	14	1	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	68	48742	21	5	13	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.65	41	49392	24	5	17	2	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	59	58236	19	1	15	3	46
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	39	44492	21	4	16	1	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.66	50	54870	31	2	24	5	53
ASE_00416	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	71	77317	38	4	29	5	56
ASE_00419	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	77	54857	13	8	4	1	26
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	62	46886	28	5	18	5	32
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.71	66	56860	29	5	22	2	43
ASE_00427	RNaseP_nuc links to Rfam database...	0.17	0.17	0.16	8	40705	50	11	31	8	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	77	76539	23	2	18	3	48
ASE_00430	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	65	46886	27	4	16	7	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.64	54	79316	32	1	30	1	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.94	83	64173	9	0	5	4	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.57	41	64189	36	6	25	5	71
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	86	70771	20	1	18	1	39
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.70	0.76	78	101372	49	7	18	24	33
RFA_00601	Telomerase-vert links to Rfam database...	0.34	0.36	0.32	41	99105	97	33	56	8	73
RFA_00602	Telomerase-vert links to Rfam database...	0.67	0.71	0.64	82	101347	54	22	24	8	34
SRP_00006	Metazoa_SRP links to Rfam database...	0.94	0.92	0.97	93	45657	6	0	3	3	8
SRP_00011	Plant_SRP links to Rfam database...	0.40	0.38	0.43	39	46270	52	5	46	1	65
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.73	0.83	72	46273	19	2	13	4	27
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.48	0.45	0.53	39	37601	35	5	30	0	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.71	0.69	0.73	61	36772	27	4	19	4	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.67	0.62	0.73	54	37054	21	0	20	1	33
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.78	0.78	69	36767	20	3	17	0	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.64	0.63	57	36225	36	5	28	3	32
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.63	0.61	0.65	53	36504	28	3	25	0	34
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	90	44755	6	1	4	1	9
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45359	92	8	84	0	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.72	0.71	0.72	71	44155	29	1	26	2	29
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.75	0.71	0.80	63	34112	16	3	13	0	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.91	0.89	0.94	80	35693	5	1	4	0	10
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.83	0.81	0.85	73	35425	15	0	13	2	17
SRP_00102	Metazoa_SRP links to Rfam database...	0.78	0.75	0.81	76	44457	18	0	18	0	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.57	0.53	0.61	54	45362	37	3	32	2	48
SRP_00152	Plant_SRP links to Rfam database...	0.54	0.49	0.61	50	45671	32	8	24	0	53
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45405	46	8	38	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.78	0.80	70	38138	20	3	15	2	20
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.81	65	38701	19	4	11	4	21
SRP_00178	Plant_SRP links to Rfam database...	0.77	0.73	0.82	74	45663	18	6	10	2	28
SRP_00179	Plant_SRP links to Rfam database...	0.81	0.75	0.88	79	45966	15	4	7	4	26
SRP_00181	Plant_SRP links to Rfam database...	0.53	0.45	0.62	46	45982	28	4	24	0	56
SRP_00182	Plant_SRP links to Rfam database...	0.58	0.56	0.61	57	45962	40	10	27	3	44
SRP_00184	Plant_SRP links to Rfam database...	0.60	0.53	0.69	53	45979	28	6	18	4	47
SRP_00188	Plant_SRP links to Rfam database...	0.22	0.22	0.23	17	31050	58	7	51	0	62
SRP_00228	Metazoa_SRP links to Rfam database...	0.93	0.92	0.94	87	45358	12	0	6	6	8
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.82	68	36232	21	0	15	6	18
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.69	0.67	0.71	59	36232	27	5	19	3	29
SRP_00317	Metazoa_SRP links to Rfam database...	0.79	0.77	0.82	75	45058	23	0	17	6	23
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35172	76	26	30	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	70	35419	25	2	20	3	21
SRP_00347	Metazoa_SRP links to Rfam database...	0.75	0.71	0.80	68	46580	19	4	13	2	28
SRP_00368	Metazoa_SRP links to Rfam database...	0.71	0.67	0.75	66	43868	25	5	17	3	32
TMR_00017	tmRNA links to Rfam database...	0.55	0.41	0.74	42	67104	19	0	15	4	60
TMR_00018	tmRNA links to Rfam database...	0.45	0.38	0.52	35	64553	36	10	22	4	57
TMR_00038	tmRNA links to Rfam database...	0.27	0.25	0.28	28	71153	78	14	58	6	82
TMR_00042	tmRNA links to Rfam database...	0.38	0.34	0.42	33	62757	48	6	39	3	65
TMR_00046	tmRNA links to Rfam database...	0.60	0.56	0.64	54	62750	37	4	27	6	42
TMR_00048	tmRNA links to Rfam database...	0.48	0.46	0.49	44	64890	55	8	38	9	51
TMR_00080	tmRNA links to Rfam database...	0.42	0.36	0.49	35	70428	37	7	30	0	61
TMR_00082	tmRNA links to Rfam database...	0.29	0.26	0.32	25	67818	53	9	44	0	71
TMR_00123	tmRNA links to Rfam database...	0.56	0.50	0.63	50	66350	35	3	27	5	51
TMR_00137	tmRNA links to Rfam database...	0.34	0.27	0.43	24	61019	40	3	29	8	65
TMR_00142	tmRNA links to Rfam database...	0.61	0.58	0.64	59	70784	46	8	25	13	43
TMR_00207	tmRNA links to Rfam database...	0.46	0.38	0.55	39	72319	37	4	28	5	64
TMR_00257	tmRNA links to Rfam database...	0.26	0.20	0.33	20	67101	45	1	39	5	78
TMR_00271	tmRNA links to Rfam database...	0.62	0.57	0.68	52	64184	36	6	19	11	39
TMR_00332	tmRNA links to Rfam database...	0.43	0.35	0.53	35	67095	36	1	30	5	64
TMR_00366	tmRNA links to Rfam database...	0.52	0.45	0.59	45	67820	42	11	20	11	55
TMR_00378	tmRNA links to Rfam database...	0.36	0.30	0.44	29	67830	47	8	29	10	68
TMR_00399	tmRNA links to Rfam database...	0.41	0.35	0.47	33	64910	43	11	26	6	61
TMR_00404	tmRNA links to Rfam database...	0.60	0.58	0.62	53	67443	49	6	26	17	39
TMR_00427	tmRNA links to Rfam database...	0.44	0.34	0.56	33	67469	31	8	18	5	64
TMR_00443	tmRNA links to Rfam database...	0.62	0.50	0.76	52	67093	23	6	10	7	52
TMR_00451	tmRNA links to Rfam database...	0.23	0.19	0.27	17	63483	50	12	34	4	72
TMR_00458	tmRNA links to Rfam database...	0.35	0.29	0.42	27	63481	45	8	30	7	66
TMR_00469	tmRNA links to Rfam database...	0.57	0.52	0.63	52	64537	35	10	21	4	48
TMR_00472	tmRNA links to Rfam database...	0.52	0.42	0.63	41	64555	29	6	18	5	56
TMR_00519	tmRNA links to Rfam database...	0.40	0.31	0.54	29	63136	38	5	20	13	66
TMR_00520	tmRNA links to Rfam database...	0.50	0.42	0.60	42	63120	38	4	24	10	57
TMR_00522	tmRNA links to Rfam database...	0.41	0.35	0.47	34	63118	47	8	30	9	63
TMR_00528	tmRNA links to Rfam database...	0.41	0.36	0.46	35	63114	51	12	29	10	62
TMR_00540	tmRNA links to Rfam database...	0.37	0.34	0.40	35	73449	60	7	45	8	69
TMR_00568	tmRNA links to Rfam database...	0.53	0.49	0.56	49	60639	44	4	34	6	50
TMR_00571	tmRNA links to Rfam database...	0.61	0.53	0.70	52	60652	30	6	16	8	47
TMR_00580	tmRNA links to Rfam database...	0.44	0.41	0.47	41	60638	50	10	37	3	59
TMR_00584	tmRNA links to Rfam database...	0.67	0.61	0.75	59	60996	30	1	19	10	38
TMR_00586	tmRNA links to Rfam database...	0.42	0.41	0.43	40	60981	59	10	44	5	57
TMR_00616	tmRNA links to Rfam database...	0.45	0.41	0.49	41	67078	50	9	33	8	58
TMR_00699	tmRNA links to Rfam database...	0.54	0.46	0.63	47	67086	33	3	25	5	55
TMR_00702	tmRNA links to Rfam database...	0.35	0.27	0.46	27	67102	39	5	27	7	73
TMR_00703	tmRNA links to Rfam database...	0.56	0.48	0.64	48	67453	34	5	22	7	51

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]