CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	TurboFold(20)		RSpredict(seed)
MCC	0.771	>	0.038
Average MCC ± 95% Confidence Intervals	0.769 ± 0.012	>	0.042 ± 0.006
Sensitivity	0.718	>	0.023
Positive Predictive Value	0.828	>	0.065
Total TP	15230	>	489
Total TN	11533988	<	11544890
Total FP	4169	<	7401
Total FP CONTRA	335	<	576
Total FP INCONS	2825	<	6423
Total FP COMP	1009	>	402
Total FN	5968	<	20709
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of TurboFold(20) and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for TurboFold(20) and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for TurboFold(20) and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(20) and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for TurboFold(20) and RSpredict(seed)).

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Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

Total Base Pair Counts
Total TP	15230
Total TN	11533988
Total FP	4169
Total FP CONTRA	335
Total FP INCONS	2825
Total FP COMP	1009
Total FN	5968

Total Scores
MCC	0.771
Average MCC ± 95% Confidence Intervals	0.769 ± 0.012
Sensitivity	0.718
Positive Predictive Value	0.828
Nr of predictions	205

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2. Individual counts for TurboFold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	76	47803	17	5	11	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.95	89	57876	10	1	4	5	28
ASE_00006	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	47497	19	3	14	2	21
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	78	59588	26	1	18	7	32
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	84	73820	22	3	13	6	39
ASE_00018	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	105	80484	14	1	11	2	29
ASE_00020	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	81	73817	24	2	20	2	45
ASE_00021	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	106	104071	26	1	18	7	54
ASE_00022	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	86	82926	22	3	13	6	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.82	0.76	0.89	96	84558	20	1	11	8	30
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	73	70401	31	2	24	5	45
ASE_00037	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	74	59252	16	1	13	2	36
ASE_00038	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	75	53543	12	1	9	2	26
ASE_00040	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	92	78891	26	1	19	6	41
ASE_00041	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	72	57546	13	0	12	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	100	89981	22	2	17	3	45
ASE_00044	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	83	54515	21	3	14	4	22
ASE_00045	RNaseP_bact_b links to Rfam database...	0.72	0.65	0.79	52	47212	22	0	14	8	28
ASE_00064	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	63	45377	19	0	11	8	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	37608	8	1	6	1	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	89	67788	22	1	18	3	30
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	110	108683	24	2	16	6	52
ASE_00077	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	56	45079	22	2	13	7	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	64	42998	17	0	9	8	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	76	71533	26	0	22	4	47
ASE_00081	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	67	49688	17	2	13	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	75	70413	24	0	12	12	41
ASE_00083	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	85	62386	12	0	10	2	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	71	53544	20	1	12	7	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	96	88296	24	1	17	6	48
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	67	55518	31	1	25	5	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	84	63451	16	1	10	5	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	89	64518	19	1	12	6	31
ASE_00104	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	84	64158	25	1	18	6	35
ASE_00105	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	61	64180	25	1	19	5	50
ASE_00107	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	93	73043	19	1	16	2	34
ASE_00114	RNaseP_bact_b links to Rfam database...	0.53	0.45	0.61	35	45394	32	0	22	10	42
ASE_00115	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	12	0	9	3	28
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	60636	26	1	22	3	35
ASE_00119	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	68	62757	12	0	10	2	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	53	38435	19	1	14	4	32
ASE_00125	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.95	60	39277	7	0	3	4	28
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	63	40393	17	1	13	3	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	77	53214	15	1	9	5	23
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	79	62740	21	1	15	5	32
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	39275	16	1	10	5	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.76	68	50313	28	2	20	6	27
ASE_00135	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	63098	26	0	15	11	32
ASE_00136	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.94	74	48126	11	0	5	6	18
ASE_00137	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	78	48426	14	3	9	2	20
ASE_00138	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	58	40396	18	1	15	2	23
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	82	70776	21	3	15	3	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	95	67056	14	3	7	4	27
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	79	70772	30	1	24	5	45
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.67	0.67	49	57557	63	2	22	39	24
ASE_00161	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.82	63	53551	19	0	14	5	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	63	53218	29	2	18	9	30
ASE_00165	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	52884	26	4	20	2	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	72	48747	11	2	7	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.93	74	48436	10	0	6	4	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.85	79	58903	20	1	13	6	27
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	64	60997	15	0	14	1	45
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.74	68	59939	29	3	21	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	62	44182	12	1	8	3	22
ASE_00180	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	77	51272	16	2	9	5	23
ASE_00181	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	76	57537	24	0	17	7	30
ASE_00182	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	89	84150	17	1	15	1	47
ASE_00184	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	80	54520	24	1	14	9	22
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	92	73426	23	1	17	5	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	98	78886	26	3	16	7	34
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	16	1	12	3	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	101	89127	31	3	22	6	44
ASE_00198	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	72	52565	14	3	10	1	30
ASE_00203	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	77	46580	10	3	5	2	19
ASE_00212	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	113	93832	22	2	14	6	35
ASE_00214	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	74	56187	24	2	17	5	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.78	54	48447	23	0	15	8	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	66	39263	13	3	8	2	16
ASE_00217	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	61	40394	17	2	13	2	29
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	79	64527	19	1	13	5	38
ASE_00228	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	65	46894	17	3	9	5	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	64	42404	20	5	13	2	23
ASE_00231	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	75	47806	15	4	10	1	21
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	38424	14	4	8	2	17
ASE_00234	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.77	75	75369	25	2	20	3	54
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	74	64166	24	4	17	3	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	55	43884	22	1	16	5	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.87	90	60972	18	1	12	5	22
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.77	74	62385	26	0	22	4	40
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	64	36783	16	3	6	7	18
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	85	74583	25	2	21	2	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	71	50955	19	1	13	5	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.88	93	70394	16	2	11	3	27
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	60	45078	22	0	12	10	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	72279	28	2	21	5	40
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.77	58	55536	21	3	14	4	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	56	48136	15	1	12	2	35
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	74	53214	17	2	11	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	62	51923	24	1	17	6	36
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	63	44482	14	0	6	8	25
ASE_00282	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	86	77708	24	3	18	3	41
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	75	61686	19	3	12	4	32
ASE_00284	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	84	58213	22	2	12	8	24
ASE_00285	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	84	68906	23	2	14	7	38
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	46585	19	1	8	10	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	74	54858	19	2	12	5	29
ASE_00292	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	23	3	15	5	37
ASE_00294	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	127	114342	18	1	11	6	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	99	91680	31	2	25	4	46
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	61	52889	27	2	23	2	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	55	67441	34	1	31	2	58
ASE_00305	RNaseP_bact_b links to Rfam database...	0.78	0.71	0.86	60	54545	22	0	10	12	25
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.70	0.83	83	80100	24	5	12	7	35
ASE_00321	RNaseP_bact_b links to Rfam database...	0.72	0.67	0.77	59	54538	23	5	13	5	29
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.63	0.86	71	72688	24	1	11	12	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	25	2	16	7	37
ASE_00335	RNaseP_bact_b links to Rfam database...	0.78	0.72	0.83	84	75365	26	5	12	9	32
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	45976	24	4	13	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	83	62381	19	2	15	2	32
ASE_00353	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	74	57876	25	1	19	5	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.73	68	75373	26	0	25	1	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	66	48120	21	1	18	2	25
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.88	71	51279	14	0	10	4	23
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	74	54195	21	0	16	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	61	58566	28	3	23	2	37
ASE_00367	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.79	59	42996	26	0	16	10	27
ASE_00369	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	85	55848	17	0	12	5	22
ASE_00370	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	65	41832	15	0	8	7	19
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51916	25	3	20	2	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	66	44773	15	0	11	4	22
ASE_00376	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	71	56859	26	1	22	3	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	85	57532	18	2	11	5	22
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	23	3	16	4	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	69	41829	11	0	7	4	15
ASE_00383	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	80	54522	16	1	12	3	25
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	72	48433	20	0	11	9	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	73	50314	21	0	16	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	71	55854	22	1	19	2	33
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	62	45681	20	0	10	10	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	65	42121	18	0	9	9	20
ASE_00393	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	55	47821	26	1	18	7	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	77	46890	7	0	4	3	16
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	64	41536	26	1	15	10	20
ASE_00396	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	67	41540	15	1	8	6	16
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	78	54526	16	1	10	5	27
ASE_00398	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	73	55862	18	0	10	8	31
ASE_00400	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57881	26	1	19	6	37
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	71	76926	33	4	27	2	55
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	67	42410	12	0	9	3	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	67	55858	24	0	20	4	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	61	42998	22	0	12	10	24
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	70	48747	21	0	11	10	24
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	47	49378	33	10	20	3	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.73	66	58220	28	3	22	3	39
ASE_00413	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	54	44475	26	5	17	4	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	68	54857	23	1	20	2	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	97	77303	29	3	18	8	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	81	54857	11	2	6	3	22
ASE_00422	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	73	46883	21	3	12	6	21
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	77	56858	23	3	15	5	32
ASE_00427	RNaseP_nuc links to Rfam database...	0.22	0.20	0.26	9	40720	50	2	24	24	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	92	76522	28	3	19	6	33
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.77	72	46877	23	5	17	1	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.62	67	79293	43	1	40	2	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	77	64174	11	0	10	1	35
ASE_00448	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	76	64166	27	2	17	8	36
ASE_00451	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	88	70769	24	1	18	5	37
RFA_00599	Telomerase-vert links to Rfam database...	0.74	0.74	0.74	82	101364	50	9	20	21	29
RFA_00601	Telomerase-vert links to Rfam database...	0.76	0.75	0.77	85	99124	46	3	23	20	29
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.84	0.85	98	101360	32	5	12	15	18
SRP_00006	Metazoa_SRP links to Rfam database...	0.94	0.91	0.97	92	45658	9	0	3	6	9
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.79	0.83	82	46261	17	0	17	0	22
SRP_00015	Plant_SRP links to Rfam database...	0.91	0.87	0.95	86	46269	10	0	5	5	13
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.82	0.79	0.85	69	37594	13	0	12	1	18
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.83	0.81	0.85	71	36772	17	0	13	4	17
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.77	67	37041	20	1	19	0	20
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.79	0.78	0.79	69	36769	18	2	16	0	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.70	0.71	0.70	63	36225	27	4	23	0	26
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.81	0.79	0.83	69	36502	14	2	12	0	18
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.94	1.00	93	44757	2	0	0	2	6
SRP_00066	Metazoa_SRP links to Rfam database...	0.86	0.82	0.91	82	45361	8	0	8	0	18
SRP_00086	Metazoa_SRP links to Rfam database...	0.83	0.80	0.86	80	44160	14	1	12	1	20
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.74	0.73	0.75	65	34104	22	4	18	0	24
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.86	0.84	0.88	76	35692	10	0	10	0	14
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.69	0.67	0.71	60	35427	26	3	21	2	30
SRP_00102	Metazoa_SRP links to Rfam database...	0.84	0.82	0.86	83	44455	15	2	11	2	18
SRP_00103	Metazoa_SRP links to Rfam database...	0.94	0.91	0.97	93	45355	3	0	3	0	9
SRP_00152	Plant_SRP links to Rfam database...	0.93	0.90	0.96	93	45656	7	0	4	3	10
SRP_00171	Metazoa_SRP links to Rfam database...	0.75	0.68	0.83	60	45379	12	2	10	0	28
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.89	0.87	0.91	78	38140	9	0	8	1	12
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.81	0.77	0.85	66	38703	12	2	10	0	20
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.87	0.96	89	45660	6	0	4	2	13
SRP_00179	Plant_SRP links to Rfam database...	0.92	0.88	0.97	92	45961	7	0	3	4	13
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.81	0.89	83	45963	12	0	10	2	19
SRP_00182	Plant_SRP links to Rfam database...	0.88	0.84	0.92	85	45964	10	0	7	3	16
SRP_00184	Plant_SRP links to Rfam database...	0.85	0.80	0.90	80	45967	13	0	9	4	20
SRP_00188	Plant_SRP links to Rfam database...	0.93	0.90	0.96	71	31051	6	0	3	3	8
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.95	0.97	90	45358	8	0	3	5	5
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.74	0.73	0.74	63	36230	25	4	18	3	23
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.77	0.75	0.79	66	36231	19	2	16	1	22
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.90	0.99	88	45061	7	0	1	6	10
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.34	0.44	0.27	17	35181	67	22	25	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.74	0.78	67	35425	21	2	17	2	24
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.90	0.98	86	46577	6	0	2	4	10
SRP_00368	Metazoa_SRP links to Rfam database...	0.95	0.93	0.97	91	43862	6	0	3	3	7

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	489
Total TN	11544890
Total FP	7401
Total FP CONTRA	576
Total FP INCONS	6423
Total FP COMP	402
Total FN	20709

Total Scores
MCC	0.038
Average MCC ± 95% Confidence Intervals	0.042 ± 0.006
Sensitivity	0.023
Positive Predictive Value	0.065
Nr of predictions	205

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	47872	20	0	19	1	93
ASE_00005	RNaseP_bact_a links to Rfam database...	0.07	0.03	0.15	4	57943	23	0	23	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	47563	20	0	19	1	89
ASE_00007	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	59652	25	2	23	0	102
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73875	45	5	40	0	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	80555	38	4	34	0	126
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73890	35	3	27	5	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.03	1	104159	37	1	35	1	159
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82960	70	11	57	2	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84597	71	9	60	2	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70470	33	2	28	3	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59301	39	5	34	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	53605	24	0	19	5	97
ASE_00040	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.10	4	78961	38	0	38	0	129
ASE_00041	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	57601	25	2	23	0	104
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.06	0.16	8	90051	41	0	41	0	137
ASE_00044	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54586	25	2	23	0	101
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47231	50	9	38	3	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45428	21	0	19	2	85
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37659	21	0	16	5	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.23	8	67861	27	2	25	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108764	51	2	45	4	162
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45128	24	0	22	2	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	79
ASE_00080	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.11	4	71595	35	1	31	3	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	49746	21	0	20	1	93
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70479	25	5	16	4	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62453	28	2	26	0	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	53602	24	0	22	2	95
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88388	24	0	22	2	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	55586	26	0	21	5	97
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63514	33	2	30	1	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.20	8	64580	32	0	32	0	112
ASE_00104	RNaseP_bact_a links to Rfam database...	0.14	0.08	0.25	9	64225	27	0	27	0	110
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64234	32	1	26	5	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	73119	26	2	24	0	119
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45410	43	6	35	2	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.18	4	54593	20	0	18	2	97
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60697	31	3	26	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62807	30	4	24	2	108
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	25	2	18	5	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39320	25	2	18	5	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	4	40449	17	0	17	0	78
ASE_00128	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	53274	28	0	23	5	96
ASE_00129	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.11	4	62797	39	2	32	5	107
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39321	24	0	19	5	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50382	23	0	21	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63169	21	0	21	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48184	23	0	21	2	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.14	4	48488	26	0	24	2	94
ASE_00138	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	4	40449	19	0	17	2	77
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70849	32	4	23	5	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67119	42	0	42	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	7	70843	26	2	24	0	117
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57617	13	2	11	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53576	57	8	44	5	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.14	4	53273	29	2	22	5	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52947	33	0	28	5	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48807	22	0	17	5	89
ASE_00171	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.20	4	48496	17	0	16	1	90
ASE_00172	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	58972	22	0	20	2	102
ASE_00174	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	61049	27	0	22	5	105
ASE_00175	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.11	4	59996	36	0	31	5	103
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44231	24	1	21	2	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51336	25	0	20	5	96
ASE_00181	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	57600	31	0	26	5	102
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84231	29	0	24	5	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	54590	21	0	21	0	98
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73514	28	0	22	6	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.09	4	78958	41	0	41	0	128
ASE_00190	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.07	2	45423	33	6	20	7	88
ASE_00197	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.09	4	89207	42	0	42	0	141
ASE_00198	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	52625	21	0	21	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	46641	22	0	20	2	92
ASE_00212	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	4	93912	45	0	45	0	144
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56250	35	0	30	5	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48497	24	0	19	5	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.21	4	39321	15	0	15	0	78
ASE_00217	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	40447	19	2	17	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.25	8	64588	24	2	22	0	109
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46947	26	0	24	2	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.08	0.05	0.15	4	42460	22	0	22	0	83
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47871	24	0	24	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.18	4	38481	20	0	18	2	80
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75437	34	2	27	5	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64230	36	0	31	5	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43935	19	0	17	2	83
ASE_00242	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	61041	26	2	24	0	104
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	62447	26	2	24	0	106
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36839	17	0	17	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	8	74652	32	0	31	1	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51017	21	0	19	2	93
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70472	33	2	26	5	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	45129	18	0	17	1	84
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72368	22	2	20	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55586	30	0	25	5	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	48181	25	1	19	5	87
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53273	32	0	28	4	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	51978	26	0	21	5	94
ASE_00281	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.20	4	44531	18	0	16	2	84
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77790	30	0	25	5	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61733	43	4	39	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	58280	32	2	25	5	104
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68972	39	4	30	5	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.18	4	46643	24	0	18	6	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	54920	27	0	22	5	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.19	8	81768	34	2	32	0	130
ASE_00294	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	4	114431	46	0	46	0	167
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.06	0.16	8	91757	41	0	41	0	137
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52950	27	0	25	2	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	67502	26	0	22	4	109
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54563	57	10	42	5	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80136	66	14	50	2	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54560	57	11	44	2	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72715	59	11	45	3	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	81763	39	0	39	0	130
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75409	59	10	47	2	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.17	4	46032	22	0	20	2	81
ASE_00342	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	62447	26	2	24	0	107
ASE_00353	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	57938	33	2	26	5	103
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75427	39	1	38	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48184	19	0	17	2	87
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51340	22	0	20	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	54258	28	1	22	5	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58629	29	0	24	5	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	43051	18	0	16	2	82
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55919	31	2	24	5	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	3	41885	19	0	17	2	81
ASE_00372	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.12	3	51978	22	0	22	0	97
ASE_00374	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.17	4	44826	25	0	20	5	84
ASE_00376	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	56928	25	0	21	4	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57604	31	0	26	5	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	46035	19	0	17	2	85
ASE_00382	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41884	19	0	17	2	80
ASE_00383	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	54588	28	2	21	5	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	48493	21	1	18	2	88
ASE_00386	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	50380	20	0	19	1	92
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55917	33	2	26	5	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45729	20	1	19	0	85
ASE_00390	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	42174	19	0	17	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47875	22	0	20	2	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	46948	21	0	19	2	89
ASE_00395	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41595	17	0	17	0	80
ASE_00396	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	41596	18	0	16	2	79
ASE_00397	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54587	29	3	21	5	101
ASE_00398	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.11	4	55910	31	1	30	0	100
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	57944	27	0	22	5	102
ASE_00401	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.06	2	76993	33	3	30	0	124
ASE_00402	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	42466	18	0	16	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55917	33	1	27	5	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	81
ASE_00406	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.18	4	48806	20	0	18	2	90
ASE_00411	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.20	4	49435	23	1	15	7	85
ASE_00412	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	58283	29	1	23	5	101
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44529	22	2	20	0	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54920	26	1	25	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77398	23	1	22	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54918	33	0	28	5	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	46944	25	0	23	2	90
ASE_00423	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	56920	25	2	23	0	101
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40744	11	5	6	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76610	28	1	25	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	46946	23	0	21	2	93
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79367	34	0	34	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.07	0.03	0.17	3	64243	17	0	15	2	109
ASE_00448	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	3	64224	34	7	27	0	109
ASE_00451	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	70842	26	2	24	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101437	38	5	33	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99191	44	6	38	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101428	47	8	39	0	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45687	66	8	58	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46290	70	5	65	0	104
SRP_00015	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46288	72	10	62	0	99
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37604	71	8	63	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37060	68	11	57	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36246	69	9	60	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36515	70	10	60	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44771	79	5	74	0	99
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	9	70	0	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44175	78	6	72	0	100
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34125	62	8	54	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35709	69	9	60	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	35444	61	6	55	0	84
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44473	78	5	73	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	7	72	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45682	71	8	63	0	103
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45381	70	13	57	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38160	67	5	61	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38713	69	9	59	1	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45685	68	8	60	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	10	60	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	11	59	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	101
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	31055	70	13	57	0	79
SRP_00228	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45385	66	6	60	0	95
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	36246	63	6	57	0	80
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	36247	62	14	48	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45079	71	8	63	0	98
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35188	68	25	32	11	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	35445	60	6	54	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46596	69	9	60	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43877	79	6	73	0	98

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

2. Individual counts for TurboFold(20) [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]