Table of contents:
- Overview
- Performance Plots
- Performance of TurboFold(seed)
- scored higher in this pairwise comparison
- Performance of PETfold_pre2.0(20)
- scored lower in this pairwise comparison
- Compile and download dataset for TurboFold(seed) & PETfold_pre2.0(20) [.zip] - may take several seconds...
Overview
| Metric |
TurboFold(seed) |
|
PETfold_pre2.0(20) |
|---|
| MCC |
0.755 |
>
|
0.341 |
| Average MCC ± 95% Confidence Intervals |
0.755
±
|
>
|
0.341
±
|
| Sensitivity |
0.739 |
>
|
0.136 |
| Positive Predictive Value |
0.774 |
<
|
0.857 |
| Total TP |
65 |
>
|
12 |
| Total TN |
36231 |
<
|
36301 |
| Total FP |
20 |
>
|
2 |
| Total FP CONTRA |
2 |
>
|
0 |
| Total FP INCONS |
17 |
>
|
2 |
| Total FP COMP |
1 |
>
|
0 |
| Total FN |
23 |
<
|
76 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of TurboFold(seed) and PETfold_pre2.0(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for TurboFold(seed)
and PETfold_pre2.0(20)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(seed) and PETfold_pre2.0(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for TurboFold(seed)
and PETfold_pre2.0(20)).
Performance of TurboFold(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for TurboFold(seed)
| Total Base Pair Counts |
|---|
| Total TP |
65 |
| Total TN |
36231 |
| Total FP |
20 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
17 |
| Total FP COMP |
1 |
| Total FN |
23 |
| Total Scores |
|---|
| MCC |
0.755 |
| Average MCC ± 95% Confidence Intervals |
0.755
±
|
| Sensitivity |
0.739 |
| Positive Predictive Value |
0.774 |
| Nr of predictions |
1 |
Performance of PETfold_pre2.0(20)
- scored lower in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
12 |
| Total TN |
36301 |
| Total FP |
2 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
2 |
| Total FP COMP |
0 |
| Total FN |
76 |
| Total Scores |
|---|
| MCC |
0.341 |
| Average MCC ± 95% Confidence Intervals |
0.341
±
|
| Sensitivity |
0.136 |
| Positive Predictive Value |
0.857 |
| Nr of predictions |
1 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
