CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	UNAFold		RSpredict(20)
MCC	0.547	>	0.052
Average MCC ± 95% Confidence Intervals	0.547 ± 0.022	>	0.047 ± 0.012
Sensitivity	0.535	>	0.041
Positive Predictive Value	0.560	>	0.069
Total TP	13451	>	1036
Total TN	14150186	<	14159081
Total FP	11629	<	14577
Total FP CONTRA	1536	<	1944
Total FP INCONS	9020	<	12132
Total FP COMP	1073	>	501
Total FN	11675	<	24090
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of UNAFold and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for UNAFold and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for UNAFold and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for UNAFold and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for UNAFold and RSpredict(20)).

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Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	13451
Total TN	14150186
Total FP	11629
Total FP CONTRA	1536
Total FP INCONS	9020
Total FP COMP	1073
Total FN	11675

Total Scores
MCC	0.547
Average MCC ± 95% Confidence Intervals	0.547 ± 0.022
Sensitivity	0.535
Positive Predictive Value	0.560
Nr of predictions	245

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2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	98	80484	21	4	15	2	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	86	104057	60	7	46	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.48	56	82911	67	6	55	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.57	69	84545	60	8	44	8	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	83	89971	49	2	44	3	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00045	RNaseP_bact_b links to Rfam database...	0.67	0.66	0.67	53	47199	34	7	19	8	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	47	3	40	4	72
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	78	88288	49	5	39	5	66
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00114	RNaseP_bact_b links to Rfam database...	0.49	0.49	0.49	38	45374	45	6	33	6	39
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.36	0.33	31	53533	68	10	54	4	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	69	84130	59	6	50	3	67
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	73	89127	58	2	51	5	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	72	93827	66	5	57	4	76
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00292	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	82	81693	38	3	32	3	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	40	91676	90	9	81	0	105
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00305	RNaseP_bact_b links to Rfam database...	0.67	0.68	0.65	58	54526	37	14	17	6	27
ASE_00318	RNaseP_bact_b links to Rfam database...	0.65	0.64	0.67	75	80088	41	13	24	4	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.56	0.56	0.56	49	54528	41	7	31	3	39
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	71	81683	57	2	54	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40677	83	23	46	14	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.63	78	101352	64	17	28	19	33
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	89	21	49	19	58
RFA_00602	Telomerase-vert links to Rfam database...	0.51	0.53	0.48	62	101347	86	18	48	20	54
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.88	0.98	89	45662	9	0	2	7	12
SRP_00011	Plant_SRP links to Rfam database...	0.43	0.41	0.45	43	46265	52	4	48	0	61
SRP_00015	Plant_SRP links to Rfam database...	0.54	0.53	0.55	52	46266	47	8	34	5	47
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.75	67	37586	22	7	15	0	20
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.69	0.69	0.69	61	36768	33	2	25	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.70	0.67	0.73	58	37049	21	3	18	0	29
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.76	68	36767	23	4	17	2	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.70	0.69	0.71	61	36229	29	2	23	4	28
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.62	0.60	0.65	52	36505	30	5	23	2	35
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.93	1.00	92	44758	2	0	0	2	7
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45359	92	10	82	0	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.68	0.66	0.69	66	44158	30	3	26	1	34
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.67	61	34100	30	3	27	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.83	0.81	0.86	73	35693	12	1	11	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.32	0.31	0.33	28	35427	56	3	53	0	62
SRP_00102	Metazoa_SRP links to Rfam database...	0.92	0.88	0.97	89	44459	4	0	3	1	12
SRP_00103	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	88	45354	11	1	8	2	14
SRP_00152	Plant_SRP links to Rfam database...	0.65	0.63	0.67	65	45656	35	1	31	3	38
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45355	96	16	80	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.75	64	38141	27	1	20	6	26
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.74	0.73	64	38693	28	7	17	4	22
SRP_00178	Plant_SRP links to Rfam database...	0.81	0.75	0.87	76	45666	13	1	10	2	26
SRP_00179	Plant_SRP links to Rfam database...	0.88	0.83	0.95	87	45964	9	1	4	4	18
SRP_00181	Plant_SRP links to Rfam database...	0.31	0.29	0.34	30	45967	59	2	57	0	72
SRP_00182	Plant_SRP links to Rfam database...	0.70	0.68	0.73	69	45961	27	5	21	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.58	0.54	0.64	54	45971	35	4	27	4	46
SRP_00188	Plant_SRP links to Rfam database...	0.15	0.15	0.16	12	31049	64	6	58	0	67
SRP_00228	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	86	45363	10	0	2	8	9
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.76	0.74	0.77	64	36232	25	1	18	6	22
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.69	0.67	0.71	59	36232	28	4	20	4	29
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.73	0.83	72	45063	22	0	15	7	26
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.66	0.63	0.69	57	35428	28	2	24	2	34
SRP_00347	Metazoa_SRP links to Rfam database...	0.83	0.82	0.84	79	46571	20	5	10	5	17
SRP_00368	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	89	43865	7	0	2	5	9
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	1036
Total TN	14159081
Total FP	14577
Total FP CONTRA	1944
Total FP INCONS	12132
Total FP COMP	501
Total FN	24090

Total Scores
MCC	0.052
Average MCC ± 95% Confidence Intervals	0.047 ± 0.012
Sensitivity	0.041
Positive Predictive Value	0.069
Nr of predictions	245

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	47840	54	12	42	0	96
ASE_00005	RNaseP_bact_a links to Rfam database...	0.13	0.09	0.21	10	57923	37	1	36	0	107
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47543	43	3	40	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.05	0.04	0.07	4	59624	57	13	44	0	106
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73867	57	5	48	4	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.18	10	80544	49	7	40	2	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73854	74	5	61	8	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104125	72	3	68	1	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82939	94	7	82	5	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84576	90	11	79	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70427	79	8	65	6	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59294	48	3	43	2	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53584	44	5	39	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78969	34	7	27	0	133
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57602	28	2	26	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	9	90046	45	4	41	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54577	38	8	30	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47218	60	6	54	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45395	56	6	50	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37625	53	1	49	3	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	7	67854	37	2	33	2	112
ASE_00075	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.05	3	108746	70	3	59	8	159
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45116	34	1	33	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	42	5	37	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71576	59	1	54	4	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49718	52	3	49	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	70455	51	5	39	7	115
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62427	56	5	49	2	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53583	45	2	43	0	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88355	55	2	53	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55546	65	8	57	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63491	55	9	46	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64563	47	5	42	0	110
ASE_00104	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64206	47	8	37	2	109
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64219	45	1	41	3	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	73084	65	2	63	0	123
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45389	62	20	42	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54548	68	7	60	1	101
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60672	56	7	47	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.04	2	62788	52	3	42	7	106
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	22	2	18	2	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39309	35	1	30	4	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40438	35	3	29	3	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53258	43	4	39	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62779	56	5	51	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39274	67	8	58	1	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50347	58	3	53	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63140	50	4	46	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48162	49	0	43	6	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48462	54	8	46	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40422	50	3	45	2	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70802	81	4	70	7	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67100	61	5	56	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.07	4	70819	53	5	48	0	120
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57594	47	12	24	11	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53550	82	16	62	4	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53255	51	11	35	5	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52920	55	14	41	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48767	61	5	56	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48468	50	7	41	2	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58942	55	7	47	1	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61015	60	7	53	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59976	55	5	50	0	107
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44222	32	6	25	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51312	49	6	42	1	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57585	47	12	33	2	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84196	62	11	48	3	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61379	48	2	44	2	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	49	8	40	1	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73478	58	8	50	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78937	66	12	54	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45411	41	7	33	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89207	48	1	45	2	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52603	48	3	44	1	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46622	45	4	39	2	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93880	81	6	75	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56231	49	11	38	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48444	76	3	69	4	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39302	38	11	27	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.09	4	40423	43	5	38	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.18	10	64564	47	10	36	1	107
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46906	70	8	57	5	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42431	55	12	43	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47852	43	5	38	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38461	45	2	40	3	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75400	71	6	60	5	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64206	57	6	49	2	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43916	45	8	32	5	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.16	8	61026	43	8	33	2	104
ASE_00248	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.17	10	62421	51	12	38	1	104
ASE_00254	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	36817	38	6	32	0	81
ASE_00255	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.12	8	74622	65	5	56	4	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50989	51	4	47	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.02	0.02	0.03	2	70422	76	10	66	0	118
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45099	51	10	41	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72338	52	5	47	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55569	43	4	38	1	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48169	36	8	28	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53256	47	9	36	2	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51946	57	9	48	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44508	43	4	39	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77748	67	6	61	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61715	70	4	57	9	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58255	56	9	47	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68937	72	9	60	3	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46631	36	6	28	2	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	45	5	39	1	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.13	10	81733	67	11	56	0	128
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.10	10	114384	87	9	78	0	161
ASE_00296	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.14	10	91737	59	5	54	0	135
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52927	52	2	46	4	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67482	46	9	37	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54535	87	12	68	7	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80091	109	9	100	0	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54540	79	9	66	4	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72698	75	17	56	2	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	81740	67	5	61	1	134
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75387	79	10	69	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46000	56	11	45	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.15	9	62422	50	15	35	0	106
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57915	55	1	54	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75396	71	4	66	1	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48153	52	5	47	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51317	45	8	35	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54241	47	6	38	3	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58603	56	10	40	6	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	43031	42	9	30	3	85
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55900	45	4	41	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41869	37	3	33	1	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51938	65	11	54	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44801	50	6	43	1	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56902	53	6	45	2	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57581	49	2	47	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46010	46	12	34	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41857	50	15	33	2	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54575	40	8	32	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48471	45	11	34	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50354	49	7	42	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	9	43	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45709	45	6	38	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.06	0.05	0.08	4	42143	48	8	40	0	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47858	37	5	32	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46928	46	4	39	3	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41569	48	7	40	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41584	33	1	31	1	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	48	3	45	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55878	67	13	54	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57912	63	3	55	5	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	76968	59	4	55	0	125
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42449	37	7	30	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	4	48	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	44	8	34	2	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48778	52	7	43	2	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49418	38	7	30	1	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58265	47	6	40	1	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44496	58	11	44	3	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	44	5	39	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77376	46	6	39	1	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54894	52	14	38	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.18	7	46933	31	5	26	0	87
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.09	0.21	10	56905	39	2	36	1	99
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40707	50	19	29	2	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76592	46	8	36	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46931	41	3	37	1	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79324	77	6	71	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64199	62	9	53	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64203	61	9	49	3	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.11	8	70803	65	15	50	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101404	84	13	58	13	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99153	84	11	71	2	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101402	74	17	56	1	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45659	94	11	83	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.18	0.16	0.20	17	46277	69	3	63	3	87
SRP_00015	Plant_SRP links to Rfam database...	0.21	0.20	0.22	20	46271	70	10	59	1	79
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37609	66	11	55	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36784	72	7	65	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37054	74	10	64	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36783	73	14	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36244	71	10	61	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36511	74	11	63	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.07	0.07	0.07	7	44756	87	10	77	0	92
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45356	96	4	91	1	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.37	0.36	0.38	36	44158	62	1	58	3	64
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34123	64	3	61	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35711	67	15	52	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35434	71	4	67	0	84
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44458	93	6	87	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	2	96	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.20	0.18	0.21	19	45663	73	7	64	2	84
SRP_00171	Metazoa_SRP links to Rfam database...	0.54	0.55	0.55	48	45363	51	4	36	11	40
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38154	73	8	64	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38706	76	10	65	1	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45670	83	3	80	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45966	90	5	85	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	6	80	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.24	0.23	0.26	23	45968	67	5	60	2	78
SRP_00184	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45972	70	6	60	4	82
SRP_00188	Plant_SRP links to Rfam database...	0.04	0.04	0.05	3	31059	63	7	56	0	76
SRP_00228	Metazoa_SRP links to Rfam database...	0.06	0.06	0.06	6	45357	89	1	87	1	89
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36238	71	6	65	0	80
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36239	70	10	60	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	79	45061	18	1	9	8	19
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35205	40	14	26	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35432	73	12	61	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46569	96	8	88	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43864	92	8	84	0	98
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.31	28	67072	62	13	48	1	74
TMR_00018	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64538	71	18	50	3	78
TMR_00038	tmRNA links to Rfam database...	0.30	0.25	0.36	27	71178	52	8	40	4	83
TMR_00042	tmRNA links to Rfam database...	0.17	0.15	0.19	15	62757	64	10	53	1	83
TMR_00046	tmRNA links to Rfam database...	0.08	0.07	0.09	7	62756	76	8	64	4	89
TMR_00048	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64899	73	7	60	6	81
TMR_00080	tmRNA links to Rfam database...	0.16	0.15	0.17	14	70418	78	22	46	10	82
TMR_00082	tmRNA links to Rfam database...	0.16	0.15	0.18	14	67818	73	15	49	9	82
TMR_00123	tmRNA links to Rfam database...	0.19	0.17	0.21	17	66350	70	15	48	7	84
TMR_00137	tmRNA links to Rfam database...	0.26	0.25	0.28	22	60995	61	14	44	3	67
TMR_00142	tmRNA links to Rfam database...	0.08	0.07	0.09	7	70797	78	12	60	6	95
TMR_00207	tmRNA links to Rfam database...	0.15	0.14	0.16	14	72304	74	15	57	2	89
TMR_00257	tmRNA links to Rfam database...	0.18	0.15	0.21	15	67091	65	14	41	10	83
TMR_00271	tmRNA links to Rfam database...	0.09	0.08	0.11	7	64195	67	9	50	8	84
TMR_00332	tmRNA links to Rfam database...	0.15	0.14	0.16	14	67071	82	19	57	6	85
TMR_00366	tmRNA links to Rfam database...	0.07	0.07	0.08	7	67809	85	16	64	5	93
TMR_00378	tmRNA links to Rfam database...	0.08	0.07	0.08	7	67811	85	10	68	7	90
TMR_00399	tmRNA links to Rfam database...	0.19	0.16	0.24	15	64917	50	11	37	2	79
TMR_00404	tmRNA links to Rfam database...	0.14	0.13	0.15	12	67446	70	20	50	0	80
TMR_00427	tmRNA links to Rfam database...	0.15	0.13	0.18	13	67456	63	12	47	4	84
TMR_00443	tmRNA links to Rfam database...	0.16	0.14	0.19	15	67081	70	14	51	5	89
TMR_00451	tmRNA links to Rfam database...	0.17	0.17	0.18	15	63461	73	22	48	3	74
TMR_00458	tmRNA links to Rfam database...	0.16	0.14	0.18	13	63474	65	16	43	6	80
TMR_00469	tmRNA links to Rfam database...	0.30	0.24	0.37	24	64555	48	10	31	7	76
TMR_00472	tmRNA links to Rfam database...	0.14	0.12	0.16	12	64547	67	8	53	6	85
TMR_00519	tmRNA links to Rfam database...	0.17	0.14	0.22	13	63130	51	10	37	4	82
TMR_00520	tmRNA links to Rfam database...	0.15	0.13	0.17	13	63113	77	10	54	13	86
TMR_00522	tmRNA links to Rfam database...	0.13	0.12	0.15	12	63108	76	8	62	6	85
TMR_00528	tmRNA links to Rfam database...	0.14	0.13	0.15	13	63105	77	16	56	5	84
TMR_00540	tmRNA links to Rfam database...	0.15	0.14	0.17	15	73447	81	11	63	7	89
TMR_00568	tmRNA links to Rfam database...	0.08	0.07	0.09	7	60647	74	16	56	2	92
TMR_00571	tmRNA links to Rfam database...	0.11	0.10	0.13	10	60650	68	16	50	2	89
TMR_00580	tmRNA links to Rfam database...	0.16	0.15	0.17	15	60640	72	15	56	1	85
TMR_00584	tmRNA links to Rfam database...	0.08	0.07	0.10	7	61007	69	11	50	8	90
TMR_00586	tmRNA links to Rfam database...	0.11	0.10	0.11	10	60988	77	24	53	0	87
TMR_00616	tmRNA links to Rfam database...	0.19	0.17	0.22	17	67083	64	12	49	3	82
TMR_00699	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67073	79	15	57	7	86
TMR_00702	tmRNA links to Rfam database...	0.16	0.15	0.17	15	67075	75	12	59	4	85
TMR_00703	tmRNA links to Rfam database...	0.16	0.15	0.18	15	67443	76	9	61	6	84

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]