CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		PknotsRG
MCC	0.383	>	0.368
Average MCC ± 95% Confidence Intervals	0.378 ± 0.024	>	0.368 ± 0.023
Sensitivity	0.380	>	0.366
Positive Predictive Value	0.387	>	0.371
Total TP	18316	>	17658
Total TN	118639412	>	118639170
Total FP	35448	<	36075
Total FP CONTRA	4610	<	4792
Total FP INCONS	24431	<	25149
Total FP COMP	6407	>	6134
Total FN	29919	<	30577
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Afold and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and PknotsRG).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and PknotsRG).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and PknotsRG).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	18316
Total TN	118639412
Total FP	35448
Total FP CONTRA	4610
Total FP INCONS	24431
Total FP COMP	6407
Total FN	29919

Total Scores
MCC	0.383
Average MCC ± 95% Confidence Intervals	0.378 ± 0.024
Sensitivity	0.380
Positive Predictive Value	0.387
Nr of predictions	144

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.55	0.55	0.55	145	408798	132	32	85	15	119
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.77	0.79	351	1085158	132	17	75	40	107
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	228	1170758	252	20	209	23	242
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	208	1107368	260	31	209	20	248
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	240	1172289	233	26	191	16	233
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	259	1181483	231	27	184	20	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	226	1108849	247	24	206	17	231
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	214	1178420	264	32	214	18	251
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.63	0.64	291	1135826	182	20	141	21	172
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	274	1201566	212	26	159	27	202
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	193	1152465	282	35	228	19	273
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	293	1179965	180	30	128	22	178
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	248	1190745	226	28	175	23	220
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	127	1082216	323	37	276	10	318
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1178433	259	22	222	15	270
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.48	220	1207772	267	24	219	24	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	266	1198467	216	21	172	23	212
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1105880	289	44	232	13	281
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	274	1218666	234	21	180	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.45	210	1198459	274	34	223	17	268
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	188	1192291	278	39	222	17	280
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	196	1111850	260	40	200	20	259
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	231	1122302	237	43	175	19	231
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	258	1085174	195	26	143	26	188
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.48	213	1114826	258	28	204	26	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1110338	300	45	240	15	281
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	274	33	218	23	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	229	1179985	227	29	173	25	235
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	227	1117817	231	28	188	15	226
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	347	41	290	16	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	118	1015612	321	39	256	26	314
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.28	124	1131316	337	30	290	17	332
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.72	0.71	0.74	325	1117819	142	23	93	26	133
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.48	214	1189204	258	34	201	23	262
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123814	315	46	252	17	323
CRW_00338	-	0.13	0.14	0.12	57	1052947	427	76	346	5	338
CRW_00381	-	0.32	0.33	0.31	184	2303138	513	67	342	104	373
CRW_00417	-	0.38	0.37	0.39	97	458157	161	21	128	12	165
CRW_00418	-	0.24	0.22	0.26	56	441113	170	17	144	9	204
CRW_00419	-	0.19	0.17	0.20	45	463945	187	22	154	11	220
CRW_00421	-	0.38	0.36	0.41	96	462968	155	22	117	16	170
CRW_00422	-	0.36	0.35	0.38	92	455291	171	23	129	19	171
CRW_00426	-	0.30	0.29	0.31	78	457195	183	24	149	10	187
CRW_00427	-	0.18	0.18	0.19	46	454337	212	30	168	14	215
CRW_00428	-	0.39	0.38	0.40	98	465847	162	29	121	12	162
CRW_00430	-	0.18	0.18	0.19	47	456245	207	30	168	9	219
CRW_00433	-	0.35	0.32	0.38	85	467807	142	19	117	6	178
CRW_00434	-	0.38	0.35	0.40	92	457218	146	18	118	10	171
CRW_00435	-	0.36	0.33	0.39	88	451501	148	14	122	12	177
CRW_00437	-	0.21	0.21	0.22	54	456242	197	25	169	3	206
CRW_00438	-	0.35	0.34	0.36	90	454332	170	19	140	11	178
CRW_00441	-	0.17	0.16	0.19	42	454357	187	31	151	5	220
CRW_00442	-	0.37	0.36	0.39	93	453388	156	25	122	9	168
CRW_00443	-	0.39	0.36	0.42	93	456266	153	18	113	22	167
CRW_00444	-	0.27	0.26	0.28	68	459119	181	24	150	7	195
CRW_00445	-	0.28	0.27	0.30	71	458168	175	24	140	11	194
CRW_00446	-	0.46	0.43	0.48	115	468758	135	14	109	12	150
CRW_00447	-	0.27	0.27	0.28	69	452428	194	23	156	15	191
CRW_00448	-	0.34	0.32	0.36	83	457215	169	23	125	21	178
CRW_00449	-	0.22	0.21	0.23	54	444861	185	20	161	4	206
CRW_00451	-	0.21	0.20	0.21	52	457204	204	25	165	14	212
CRW_00452	-	0.31	0.29	0.34	77	453399	174	20	132	22	185
CRW_00453	-	0.34	0.31	0.36	81	452454	150	22	119	9	180
CRW_00458	-	0.32	0.31	0.32	83	464873	185	34	140	11	181
CRW_00459	-	0.29	0.27	0.31	72	462011	176	27	131	18	191
CRW_00462	-	0.28	0.27	0.30	70	458171	178	16	146	16	191
CRW_00463	-	0.34	0.33	0.35	85	445799	164	22	134	8	169
CRW_00464	-	0.39	0.36	0.42	95	462015	142	15	116	11	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.62	268	1116330	196	21	146	29	190
CRW_00530	-	0.35	0.37	0.33	99	534792	223	55	149	19	169
CRW_00532	-	0.12	0.14	0.11	36	579108	293	84	198	11	229
CRW_00535	-	0.25	0.27	0.24	89	898092	316	73	216	27	239
CRW_00538	-	0.20	0.22	0.19	65	811827	304	77	206	21	235
CRW_00545	-	0.27	0.29	0.25	56	1343756	374	51	117	206	137
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	374	34	324	16	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	161	1119326	290	30	239	21	291
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.59	251	1098476	205	23	153	29	195
CRW_00594	-	0.22	0.24	0.20	93	1028441	382	52	309	21	302
CRW_00596	-	0.21	0.22	0.21	86	1024181	349	55	274	20	300
CRW_00604	-	0.52	0.57	0.48	46	411682	214	15	35	164	35
CRW_00606	-	0.66	0.64	0.68	59	559066	266	2	26	238	33
CRW_00607	-	0.55	0.53	0.56	41	536057	274	4	28	242	36
CRW_00617	-	0.66	0.64	0.68	41	426366	236	1	18	217	23
CRW_00678	-	0.66	0.64	0.67	78	666318	274	10	29	235	43
CRW_00684	-	0.34	0.39	0.29	53	611990	298	44	84	170	82
CRW_00704	-	0.81	0.80	0.82	75	386669	198	4	12	182	19
CRW_00706	-	0.45	0.51	0.39	30	695534	340	11	35	294	29
CRW_00710	-	0.66	0.65	0.67	74	1040293	375	8	28	339	40
CRW_00712	-	0.47	0.54	0.41	58	952747	370	30	55	285	50
CRW_00713	-	0.56	0.57	0.55	58	731339	313	11	37	265	43
CRW_00730	-	0.46	0.52	0.41	84	338869	186	39	84	63	77
CRW_00734	-	0.18	0.25	0.13	27	536961	263	99	79	85	83
CRW_00735	-	0.26	0.33	0.20	40	677832	298	85	73	140	81
CRW_00740	-	0.00	0.00	0.00	0	489332	297	100	123	74	113
CRW_00745	-	0.39	0.45	0.33	69	1343773	422	48	90	284	85
CRW_00746	-	0.45	0.47	0.44	102	550492	206	29	102	75	117
CRW_00750	-	0.39	0.44	0.35	71	709632	301	38	95	168	89
CRW_00753	-	0.15	0.16	0.14	29	489341	277	47	138	92	149
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	165	1215603	304	24	228	52	281
CRW_00766	-	0.27	0.26	0.28	63	440168	177	20	140	17	177
CRW_00768	-	0.40	0.39	0.41	101	471658	164	22	125	17	158
CRW_00769	-	0.39	0.37	0.42	93	451502	148	20	110	18	159
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	103	945610	313	37	250	26	301
CRW_00774	-	0.37	0.36	0.39	94	488322	170	17	133	20	169
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.30	0.29	0.32	113	1201668	314	34	210	70	271
CRW_00779	-	0.30	0.30	0.30	126	1031350	307	35	255	17	296
CRW_00780	-	0.18	0.18	0.19	45	475569	201	21	165	15	210
CRW_00783	-	0.37	0.36	0.38	93	453382	165	15	138	12	166
CRW_00784	-	0.37	0.35	0.39	93	456254	166	21	122	23	169
CRW_00785	-	0.35	0.33	0.36	84	452443	162	27	122	13	169
CRW_00787	-	0.23	0.24	0.23	74	646626	267	36	217	14	232
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	160	1137342	302	44	240	18	287
CRW_00793	-	0.33	0.34	0.33	127	1048686	318	55	208	55	250
CRW_00794	-	0.24	0.24	0.25	59	434543	196	15	161	20	187
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.21	0.22	0.21	85	1152511	379	51	274	54	309
CRW_00796	-	0.20	0.20	0.21	47	384777	193	27	152	14	188
CRW_00797	-	0.26	0.26	0.26	90	692907	280	33	223	24	252
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.53	0.57	251	1401532	269	24	168	77	219
CRW_00801	-	0.45	0.45	0.46	112	438270	149	29	105	15	137
CRW_00802	-	0.19	0.19	0.19	49	460062	218	33	176	9	204
CRW_00807	-	0.41	0.40	0.41	161	1391552	340	38	195	107	237
CRW_00808	-	0.37	0.39	0.35	139	1301292	367	81	179	107	217
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.49	227	1117798	259	23	212	24	243
CRW_01134	-	0.25	0.26	0.25	109	964912	341	41	293	7	318
CRW_01168	-	0.39	0.39	0.39	160	900739	274	33	221	20	251
CRW_01186	-	0.27	0.27	0.27	103	836190	293	44	234	15	283
CRW_01188	-	0.17	0.17	0.17	68	837466	339	48	283	8	325
CRW_01189	-	0.21	0.21	0.21	82	862242	334	47	270	17	310
CRW_01214	-	0.29	0.29	0.29	116	931900	288	36	243	9	289
CRW_01222	-	0.23	0.23	0.23	92	912871	321	54	259	8	305
CRW_01250	-	0.31	0.30	0.32	115	781518	257	33	209	15	263
CRW_01260	-	0.15	0.15	0.15	60	912885	340	48	283	9	333
CRW_01266	-	0.28	0.28	0.28	108	818174	292	43	235	14	273
CRW_01275	-	0.30	0.30	0.30	128	1082230	316	45	253	18	304
CRW_01283	-	0.40	0.40	0.40	163	963560	265	37	206	22	246
CRW_01314	-	0.28	0.27	0.29	110	937386	284	37	232	15	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.37	160	977470	284	42	229	13	274
CRW_01344	-	0.30	0.30	0.30	110	791545	267	40	216	11	256
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073408	220	17	174	29	249
PDB_00805	-	0.64	0.61	0.67	184	467752	116	18	74	24	118
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.63	313	1433471	221	15	172	34	227
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	228	1204659	250	31	210	9	299
PDB_01261	-	0.50	0.45	0.55	152	467752	128	4	120	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	237	1117812	242	21	190	31	254

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Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	17658
Total TN	118639170
Total FP	36075
Total FP CONTRA	4792
Total FP INCONS	25149
Total FP COMP	6134
Total FN	30577

Total Scores
MCC	0.368
Average MCC ± 95% Confidence Intervals	0.368 ± 0.023
Sensitivity	0.366
Positive Predictive Value	0.371
Nr of predictions	144

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2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.59	0.56	0.62	147	408824	142	7	82	53	117
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.79	348	1085160	130	18	75	37	110
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.45	0.45	0.45	210	1170748	276	27	230	19	260
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	236	1107378	216	34	168	14	220
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1172293	234	28	192	14	240
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.44	0.43	208	1181469	284	32	244	8	268
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.34	152	1108852	312	37	264	11	305
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.55	0.55	255	1178420	227	21	184	22	210
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.65	296	1135820	182	22	140	20	167
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	238	1201566	240	29	192	19	238
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152467	282	34	230	18	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	236	1179961	240	37	182	21	235
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	242	1190746	234	25	183	26	226
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	128	1082212	325	37	279	9	317
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	196	1178413	284	31	240	13	277
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.47	220	1207767	270	26	222	22	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	260	1198467	221	30	169	22	218
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.34	157	1105872	312	45	254	13	296
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	275	1218668	230	24	174	32	209
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	205	1198449	287	30	242	15	273
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.46	206	1192291	257	41	202	14	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.39	168	1111857	279	39	222	18	287
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	220	1122307	239	36	188	15	242
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	222	1085169	227	31	179	17	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.43	193	1114817	278	26	235	17	264
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.24	113	1110332	354	55	295	4	340
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	270	35	216	19	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.30	134	1179968	334	40	274	20	330
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.51	226	1117813	234	28	193	13	227
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.30	138	1144878	340	40	285	15	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	120	1015605	317	42	258	17	312
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	115	1131320	336	35	290	11	341
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.47	214	1117807	257	31	208	18	244
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.46	209	1189197	272	34	213	25	267
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123818	305	44	250	11	323
CRW_00338	-	0.15	0.16	0.14	64	1052952	418	71	339	8	331
CRW_00381	-	0.33	0.34	0.32	189	2303139	503	71	332	100	368
CRW_00417	-	0.38	0.37	0.39	97	458154	163	22	130	11	165
CRW_00418	-	0.17	0.16	0.19	42	441104	195	25	159	11	218
CRW_00419	-	0.26	0.25	0.28	66	463932	175	16	152	7	199
CRW_00421	-	0.34	0.32	0.36	86	462964	166	22	131	13	180
CRW_00422	-	0.38	0.37	0.39	97	455287	169	22	129	18	166
CRW_00426	-	0.26	0.25	0.27	66	457200	190	24	156	10	199
CRW_00427	-	0.24	0.23	0.25	61	454339	196	32	149	15	200
CRW_00428	-	0.29	0.28	0.30	73	465855	179	27	140	12	187
CRW_00430	-	0.33	0.31	0.36	82	456260	154	27	121	6	184
CRW_00433	-	0.37	0.34	0.40	89	467805	139	16	118	5	174
CRW_00434	-	0.24	0.22	0.26	59	457218	179	11	158	10	204
CRW_00435	-	0.33	0.31	0.36	81	451499	155	16	129	10	184
CRW_00437	-	0.21	0.21	0.22	54	456243	200	25	168	7	206
CRW_00438	-	0.35	0.34	0.36	91	454325	175	25	140	10	177
CRW_00441	-	0.17	0.16	0.19	42	454358	185	31	150	4	220
CRW_00442	-	0.38	0.36	0.39	94	453389	153	25	120	8	167
CRW_00443	-	0.40	0.37	0.43	96	456268	147	23	103	21	164
CRW_00444	-	0.28	0.26	0.30	68	459131	169	33	129	7	195
CRW_00445	-	0.28	0.26	0.29	70	458165	178	24	144	10	195
CRW_00446	-	0.42	0.39	0.44	104	468762	140	16	114	10	161
CRW_00447	-	0.19	0.19	0.20	49	452433	207	33	161	13	211
CRW_00448	-	0.35	0.33	0.37	87	457211	166	26	122	18	174
CRW_00449	-	0.22	0.21	0.23	55	444853	191	24	164	3	205
CRW_00451	-	0.23	0.22	0.24	57	457204	199	24	161	14	207
CRW_00452	-	0.37	0.35	0.39	93	453390	155	24	121	10	169
CRW_00453	-	0.30	0.28	0.32	74	452448	164	23	131	10	187
CRW_00458	-	0.35	0.34	0.37	90	464887	164	30	123	11	174
CRW_00459	-	0.29	0.27	0.31	71	462012	175	27	131	17	192
CRW_00462	-	0.38	0.36	0.41	93	458178	151	18	114	19	168
CRW_00463	-	0.36	0.35	0.37	90	445799	160	21	130	9	164
CRW_00464	-	0.39	0.36	0.42	95	462015	141	15	116	10	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	194	25	142	27	185
CRW_00530	-	0.35	0.37	0.33	99	534795	217	51	150	16	169
CRW_00532	-	0.19	0.20	0.17	54	579117	268	65	190	13	211
CRW_00535	-	0.23	0.24	0.21	80	898096	325	72	222	31	248
CRW_00538	-	0.20	0.21	0.19	62	811841	294	70	202	22	238
CRW_00545	-	0.29	0.33	0.26	63	1343736	378	53	128	197	130
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.22	95	1094029	351	37	299	15	350
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.33	141	1119330	303	41	244	18	311
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	267	1098475	190	19	142	29	179
CRW_00594	-	0.15	0.16	0.14	63	1028433	428	50	349	29	332
CRW_00596	-	0.23	0.24	0.22	92	1024178	344	55	271	18	294
CRW_00604	-	0.52	0.57	0.48	46	411682	216	14	36	166	35
CRW_00606	-	0.67	0.65	0.69	60	559066	262	4	23	235	32
CRW_00607	-	0.54	0.55	0.53	42	536051	276	8	29	239	35
CRW_00617	-	0.69	0.69	0.69	44	426362	237	1	19	217	20
CRW_00678	-	0.42	0.48	0.37	58	666280	305	27	70	208	63
CRW_00684	-	0.36	0.39	0.33	53	612010	296	36	72	188	82
CRW_00704	-	0.81	0.80	0.82	75	386669	195	4	12	179	19
CRW_00706	-	0.46	0.51	0.42	30	695538	341	7	35	299	29
CRW_00710	-	0.70	0.70	0.69	80	1040287	377	8	28	341	34
CRW_00712	-	0.47	0.54	0.41	58	952749	371	28	55	288	50
CRW_00713	-	0.65	0.65	0.65	66	731343	308	11	25	272	35
CRW_00730	-	0.46	0.51	0.42	82	338879	185	33	82	70	79
CRW_00734	-	0.21	0.29	0.15	32	536958	260	99	77	84	78
CRW_00735	-	0.26	0.34	0.20	41	677825	298	90	74	134	80
CRW_00740	-	0.00	0.00	0.00	0	489333	296	100	122	74	113
CRW_00745	-	0.45	0.52	0.40	80	1343779	394	47	74	273	74
CRW_00746	-	0.42	0.43	0.40	95	550488	210	34	108	68	124
CRW_00750	-	0.25	0.29	0.21	46	709621	315	51	118	146	114
CRW_00753	-	0.15	0.16	0.13	29	489339	268	49	138	81	149
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.21	90	1215581	387	50	299	38	356
CRW_00766	-	0.22	0.22	0.23	52	440169	187	23	147	17	188
CRW_00768	-	0.60	0.58	0.62	150	471663	116	14	79	23	109
CRW_00769	-	0.40	0.37	0.42	94	451502	146	20	109	17	158
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.24	0.24	0.25	97	945607	320	41	255	24	307
CRW_00774	-	0.35	0.33	0.38	87	488335	169	17	127	25	176
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	84	1201649	346	41	251	54	300
CRW_00779	-	0.25	0.25	0.25	104	1031342	333	41	279	13	318
CRW_00780	-	0.32	0.31	0.34	79	475565	169	23	133	13	176
CRW_00783	-	0.31	0.31	0.31	80	453374	183	18	156	9	179
CRW_00784	-	0.34	0.33	0.36	86	456250	171	32	122	17	176
CRW_00785	-	0.35	0.33	0.36	84	452443	161	27	122	12	169
CRW_00787	-	0.26	0.26	0.26	81	646638	256	41	193	22	225
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	156	1137342	304	48	240	16	291
CRW_00793	-	0.25	0.26	0.24	97	1048678	351	44	257	50	280
CRW_00794	-	0.24	0.24	0.24	58	434539	200	18	163	19	188
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.24	0.25	0.23	98	1152503	357	51	269	37	296
CRW_00796	-	0.25	0.24	0.26	57	384786	182	29	131	22	178
CRW_00797	-	0.22	0.23	0.22	79	692890	299	41	243	15	263
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	288	31	195	62	227
CRW_00801	-	0.45	0.45	0.45	111	438269	150	33	103	14	138
CRW_00802	-	0.31	0.30	0.31	76	460076	184	36	132	16	177
CRW_00807	-	0.39	0.39	0.39	157	1391544	337	46	199	92	241
CRW_00808	-	0.31	0.33	0.29	117	1301289	391	68	217	106	239
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117798	260	25	212	23	245
CRW_01134	-	0.28	0.28	0.28	119	964927	318	32	277	9	308
CRW_01168	-	0.38	0.38	0.38	156	900738	277	34	225	18	255
CRW_01186	-	0.27	0.27	0.27	104	836186	293	35	246	12	282
CRW_01188	-	0.19	0.19	0.19	76	837466	330	48	275	7	317
CRW_01189	-	0.22	0.22	0.21	87	862232	338	49	273	16	305
CRW_01214	-	0.34	0.34	0.35	136	931909	261	42	208	11	269
CRW_01222	-	0.25	0.25	0.25	98	912881	302	58	239	5	299
CRW_01250	-	0.24	0.24	0.24	89	781505	291	39	242	10	289
CRW_01260	-	0.17	0.17	0.17	66	912885	337	46	279	12	327
CRW_01266	-	0.27	0.28	0.27	105	818167	301	42	246	13	276
CRW_01275	-	0.39	0.39	0.39	169	1082226	281	38	223	20	263
CRW_01283	-	0.39	0.39	0.40	161	963559	264	37	209	18	248
CRW_01314	-	0.25	0.25	0.26	101	937377	297	39	248	10	306
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.34	0.33	0.34	145	977474	293	46	236	11	289
CRW_01344	-	0.33	0.33	0.34	120	791554	252	45	192	15	246
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	239	1073392	239	21	193	25	256
PDB_00805	-	0.69	0.67	0.71	201	467744	108	13	70	25	101
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	269	1433453	278	27	222	29	271
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.48	0.45	0.51	239	1204657	247	27	205	15	288
PDB_01261	-	0.50	0.45	0.55	152	467752	128	4	120	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	225	1117799	263	23	213	27	266

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]