CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	CentroidFold		Afold
MCC	0.452	>	0.362
Average MCC ± 95% Confidence Intervals	0.457 ± 0.021	>	0.362 ± 0.020
Sensitivity	0.382	>	0.363
Positive Predictive Value	0.534	>	0.362
Total TP	25214	>	23899
Total TN	184482968	>	184464164
Total FP	29969	<	52292
Total FP CONTRA	3462	<	7088
Total FP INCONS	18509	<	35002
Total FP COMP	7998	<	10202
Total FN	40706	<	42021
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of CentroidFold and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidFold and Afold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidFold and Afold).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidFold and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidFold and Afold).

^top

Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	25214
Total TN	184482968
Total FP	29969
Total FP CONTRA	3462
Total FP INCONS	18509
Total FP COMP	7998
Total FN	40706

Total Scores
MCC	0.452
Average MCC ± 95% Confidence Intervals	0.457 ± 0.021
Sensitivity	0.382
Positive Predictive Value	0.534
Nr of predictions	183

^top

2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.61	0.42	0.87	112	408931	51	0	17	34	152
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.79	0.76	0.83	347	1085183	108	8	63	37	111
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.75	230	1170907	91	8	70	13	240
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.64	223	1107466	140	16	111	13	233
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	241	1172408	111	9	88	14	232
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.64	0.57	0.72	269	1181581	110	23	80	7	207
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.63	225	1108945	147	19	116	12	232
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.63	228	1178519	155	15	118	22	237
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.70	226	1135957	106	11	84	11	237
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.70	268	1201642	136	16	99	21	208
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.47	0.66	217	1152591	126	17	96	13	249
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.42	0.62	200	1180095	129	14	107	8	271
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	247	1190845	120	6	98	16	221
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.39	139	1082299	226	23	195	8	306
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	213	1178522	162	17	128	17	260
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	247	1207869	131	18	101	12	228
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	250	1198552	140	19	105	16	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.65	221	1105989	128	13	105	10	232
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.66	0.61	0.71	296	1218724	154	20	101	33	188
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.57	0.50	0.66	237	1198568	130	20	101	9	241
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.35	0.57	165	1192449	145	20	106	19	303
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.67	0.57	0.79	260	1111955	83	11	60	12	195
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.41	0.55	190	1122405	171	26	130	15	272
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.43	0.60	194	1085280	142	14	113	15	252
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.70	249	1114913	130	13	96	21	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.64	165	1110536	105	15	79	11	288
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.49	0.41	0.57	186	1129931	157	13	126	18	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.64	209	1180088	132	19	100	13	255
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.67	192	1117973	105	9	86	10	261
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	265	1144950	146	18	108	20	199
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.40	0.32	0.51	138	1015753	153	22	112	19	294
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.65	162	1131511	101	11	76	14	294
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	268	1117909	98	16	67	15	190
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.68	260	1189270	143	18	105	20	216
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.41	141	1123903	217	34	172	11	320
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	109	1620517	295	50	224	21	385
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.48	0.39	0.58	203	1762152	211	28	120	63	316
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	178	1805524	303	44	204	55	343
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.48	0.67	240	1627752	163	19	99	45	262
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.30	0.25	0.36	131	1988654	302	33	197	72	386
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	104	1769656	299	47	214	38	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.24	0.36	125	1892139	288	29	192	67	389
CRW_00338	-	0.19	0.19	0.19	74	1053028	329	76	248	5	321
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	186	1586456	267	40	189	38	312
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.37	0.31	0.44	157	1615148	235	27	171	37	346
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.45	200	1674917	285	39	209	37	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.34	0.31	0.38	150	1579355	289	44	204	41	332
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	167	1640375	256	43	181	32	339
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.47	0.39	0.56	194	1611562	196	29	125	42	302
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.48	0.41	0.58	202	1625955	204	26	123	55	296
CRW_00381	-	0.44	0.37	0.53	204	2303343	267	31	153	83	353
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.32	0.30	0.34	156	1750800	337	47	253	37	359
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.29	0.34	135	1606132	324	52	209	63	329
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.42	0.35	0.49	173	1615153	226	27	150	49	323
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.42	0.36	0.48	180	1665851	239	34	160	45	315
CRW_00417	-	0.43	0.33	0.55	86	458248	77	14	55	8	176
CRW_00418	-	0.26	0.19	0.36	49	441193	89	7	81	1	211
CRW_00419	-	0.36	0.27	0.47	71	464016	84	5	74	5	194
CRW_00421	-	0.51	0.42	0.63	111	463028	80	7	57	16	155
CRW_00422	-	0.41	0.33	0.52	87	455367	99	11	70	18	176
CRW_00426	-	0.43	0.35	0.53	94	457268	91	7	77	7	171
CRW_00427	-	0.28	0.23	0.33	61	454396	136	25	99	12	200
CRW_00428	-	0.43	0.33	0.55	87	465937	79	14	57	8	173
CRW_00430	-	0.36	0.26	0.50	70	456351	73	13	56	4	196
CRW_00433	-	0.31	0.21	0.44	56	467902	74	4	66	4	207
CRW_00434	-	0.50	0.37	0.67	97	457301	54	8	40	6	166
CRW_00435	-	0.32	0.22	0.46	59	451596	77	8	62	7	206
CRW_00437	-	0.26	0.20	0.33	53	456331	112	13	93	6	207
CRW_00438	-	0.32	0.25	0.41	68	454416	105	12	85	8	200
CRW_00441	-	0.37	0.27	0.53	70	454448	67	6	57	4	192
CRW_00442	-	0.34	0.25	0.45	66	453480	92	8	74	10	195
CRW_00443	-	0.31	0.21	0.45	55	456367	78	4	64	10	205
CRW_00444	-	0.44	0.32	0.61	85	459222	61	10	44	7	178
CRW_00445	-	0.45	0.37	0.55	99	458224	87	12	68	7	166
CRW_00446	-	0.34	0.29	0.41	77	468807	124	14	98	12	188
CRW_00447	-	0.30	0.25	0.35	66	452488	131	16	106	9	194
CRW_00448	-	0.28	0.21	0.38	55	457300	97	18	73	6	206
CRW_00449	-	0.43	0.31	0.59	80	444961	60	11	44	5	180
CRW_00451	-	0.39	0.28	0.53	75	457305	72	6	60	6	189
CRW_00452	-	0.46	0.33	0.65	86	453495	63	5	42	16	176
CRW_00453	-	0.35	0.25	0.47	66	452537	84	5	68	11	195
CRW_00458	-	0.45	0.34	0.61	89	464984	66	3	54	9	175
CRW_00459	-	0.50	0.41	0.61	109	462061	91	8	63	20	154
CRW_00460	-	0.37	0.29	0.47	157	1972757	216	24	153	39	387
CRW_00462	-	0.44	0.31	0.60	82	458267	67	4	50	13	179
CRW_00463	-	0.45	0.37	0.54	94	445867	85	17	62	6	160
CRW_00464	-	0.47	0.33	0.68	87	462113	50	4	37	9	177
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	292	1116394	100	14	65	21	166
CRW_00530	-	0.37	0.31	0.44	84	534904	119	34	73	12	184
CRW_00532	-	0.27	0.23	0.31	60	579233	143	38	95	10	205
CRW_00534	-	0.40	0.32	0.49	153	1832345	179	36	121	22	330
CRW_00535	-	0.46	0.39	0.55	128	898236	125	27	79	19	200
CRW_00538	-	0.40	0.30	0.54	90	812009	98	11	65	22	210
CRW_00545	-	0.40	0.37	0.43	71	1343815	222	20	74	128	122
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.34	0.28	0.42	125	1094162	188	16	157	15	320
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.37	0.32	0.43	143	1119420	207	36	157	14	309
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	261	1098541	124	19	82	23	185
CRW_00594	-	0.25	0.24	0.27	93	1028548	271	39	215	17	302
CRW_00596	-	0.28	0.26	0.30	100	1024261	257	35	200	22	286
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.40	0.37	0.45	180	1665823	270	42	180	48	311
CRW_00604	-	0.86	0.84	0.88	68	411701	143	3	6	134	13
CRW_00606	-	0.94	0.90	0.99	83	559069	184	0	1	183	9
CRW_00607	-	0.85	0.75	0.95	58	536069	241	0	3	238	19
CRW_00617	-	0.53	0.48	0.58	31	426373	170	6	16	148	33
CRW_00678	-	0.46	0.44	0.48	53	666324	233	11	47	175	68
CRW_00684	-	0.53	0.50	0.56	68	612050	219	16	37	166	67
CRW_00704	-	0.89	0.87	0.91	82	386670	176	3	5	168	12
CRW_00706	-	0.69	0.71	0.68	42	695548	245	8	12	225	17
CRW_00709	-	0.25	0.15	0.42	13	1728839	281	0	18	263	72
CRW_00710	-	0.62	0.50	0.78	57	1040330	209	2	14	193	57
CRW_00712	-	0.47	0.48	0.46	52	952776	318	19	43	256	56
CRW_00713	-	0.82	0.72	0.94	73	731367	238	1	4	233	28
CRW_00723	-	0.57	0.50	0.66	37	1583254	319	6	13	300	37
CRW_00725	-	0.53	0.48	0.58	84	1957087	330	9	51	270	90
CRW_00730	-	0.51	0.48	0.53	78	338928	126	11	59	56	83
CRW_00734	-	0.46	0.43	0.51	47	537073	124	20	26	78	63
CRW_00735	-	0.52	0.50	0.55	60	677921	138	21	28	89	61
CRW_00740	-	0.18	0.17	0.19	19	489454	123	38	44	41	94
CRW_00742	-	0.74	0.64	0.85	108	1723169	284	3	16	265	60
CRW_00745	-	0.69	0.69	0.68	107	1343822	250	16	35	199	47
CRW_00746	-	0.55	0.52	0.59	114	550531	138	19	61	58	105
CRW_00750	-	0.59	0.56	0.62	89	709693	207	14	40	153	71
CRW_00753	-	0.28	0.24	0.32	43	489421	148	17	74	57	135
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.40	164	1640353	298	41	208	49	319
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.42	134	1636828	232	34	149	49	347
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	167	1638559	278	50	179	49	319
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.39	0.29	0.53	130	1215775	153	18	97	38	316
CRW_00766	-	0.27	0.20	0.39	47	440269	88	14	61	13	193
CRW_00768	-	0.63	0.49	0.81	128	471747	57	6	25	26	131
CRW_00769	-	0.50	0.39	0.64	99	451570	74	13	43	18	153
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.38	0.30	0.50	120	945758	137	16	106	15	284
CRW_00774	-	0.50	0.39	0.63	103	488403	77	3	57	17	160
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.54	0.38	0.77	146	1201835	66	6	38	22	238
CRW_00779	-	0.39	0.33	0.46	139	1031464	177	19	144	14	283
CRW_00780	-	0.34	0.28	0.42	71	475629	114	18	82	14	184
CRW_00781	-	0.24	0.20	0.28	90	1978732	354	40	193	121	360
CRW_00783	-	0.40	0.29	0.55	75	453491	73	7	55	11	184
CRW_00784	-	0.42	0.33	0.54	87	456330	83	15	58	10	175
CRW_00785	-	0.52	0.39	0.70	99	452535	48	8	34	6	154
CRW_00787	-	0.50	0.40	0.63	123	646759	83	6	65	12	183
CRW_00788	-	0.36	0.28	0.47	100	1758537	290	20	93	177	261
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.40	0.65	179	1137510	120	5	92	23	268
CRW_00790	-	0.23	0.20	0.28	89	1803728	328	38	195	95	358
CRW_00792	-	0.34	0.29	0.41	110	1581265	294	19	137	138	273
CRW_00793	-	0.53	0.44	0.66	164	1048826	147	21	65	61	213
CRW_00794	-	0.36	0.29	0.44	72	434613	106	13	80	13	174
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.28	0.44	110	1152672	173	15	124	34	284
CRW_00796	-	0.36	0.23	0.57	55	384906	60	0	42	18	180
CRW_00797	-	0.35	0.27	0.44	94	693037	141	20	102	19	248
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.58	0.49	0.69	230	1401641	149	10	94	45	240
CRW_00801	-	0.45	0.38	0.53	94	438339	92	22	61	9	155
CRW_00802	-	0.37	0.30	0.46	76	460153	109	16	75	18	177
CRW_00804	-	0.43	0.33	0.56	131	1420222	169	12	90	67	272
CRW_00807	-	0.50	0.39	0.64	157	1391701	161	15	73	73	241
CRW_00808	-	0.35	0.28	0.45	98	1301474	199	30	89	80	258
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.59	0.56	0.62	265	1117830	190	14	151	25	205
CRW_01134	-	0.38	0.30	0.48	127	965091	143	26	111	6	300
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	185	1606114	268	39	190	39	318
CRW_01168	-	0.53	0.44	0.63	182	900865	124	17	89	18	229
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.46	0.41	0.52	206	1593608	228	40	151	37	300
CRW_01186	-	0.40	0.34	0.47	131	836292	164	14	134	16	255
CRW_01188	-	0.21	0.19	0.23	76	837538	253	40	211	2	317
CRW_01189	-	0.25	0.22	0.28	86	862335	227	38	182	7	306
CRW_01214	-	0.33	0.27	0.41	110	932028	163	16	141	6	295
CRW_01222	-	0.31	0.26	0.38	103	913006	171	35	132	4	294
CRW_01250	-	0.48	0.39	0.59	147	781625	116	11	92	13	231
CRW_01260	-	0.21	0.16	0.27	63	913043	183	23	147	13	330
CRW_01266	-	0.36	0.34	0.38	129	818217	229	37	177	15	252
CRW_01275	-	0.40	0.36	0.45	154	1082311	205	36	155	14	278
CRW_01283	-	0.36	0.28	0.46	114	963716	147	18	118	11	295
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	192	1693289	291	56	183	52	323
CRW_01314	-	0.28	0.22	0.34	91	937500	180	20	154	6	316
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.41	0.52	176	977564	173	23	138	12	258
CRW_01344	-	0.27	0.22	0.33	81	791667	168	23	140	5	285
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.61	244	1073448	180	13	140	27	251
PDB_00805	-	0.68	0.60	0.76	182	467790	85	2	54	29	120
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	264	1500316	234	15	183	36	271
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.39	0.55	215	1471076	203	25	154	24	332
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.61	297	1606045	214	20	166	28	265
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	307	1433517	177	8	139	30	233
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.42	0.59	220	1204752	177	19	137	21	307
PDB_01261	-	0.77	0.64	0.92	216	467794	23	1	17	5	120
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	229	1117849	211	14	168	29	262

^top

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	23899
Total TN	184464164
Total FP	52292
Total FP CONTRA	7088
Total FP INCONS	35002
Total FP COMP	10202
Total FN	42021

Total Scores
MCC	0.362
Average MCC ± 95% Confidence Intervals	0.362 ± 0.020
Sensitivity	0.363
Positive Predictive Value	0.362
Nr of predictions	183

^top

2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.55	0.55	0.55	145	408798	132	32	85	15	119
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.77	0.79	351	1085158	132	17	75	40	107
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	228	1170758	252	20	209	23	242
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	208	1107368	260	31	209	20	248
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	240	1172289	233	26	191	16	233
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	259	1181483	231	27	184	20	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	226	1108849	247	24	206	17	231
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	214	1178420	264	32	214	18	251
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.63	0.64	291	1135826	182	20	141	21	172
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	274	1201566	212	26	159	27	202
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	193	1152465	282	35	228	19	273
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	293	1179965	180	30	128	22	178
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	248	1190745	226	28	175	23	220
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	127	1082216	323	37	276	10	318
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1178433	259	22	222	15	270
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.48	220	1207772	267	24	219	24	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	266	1198467	216	21	172	23	212
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1105880	289	44	232	13	281
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	274	1218666	234	21	180	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.45	210	1198459	274	34	223	17	268
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	188	1192291	278	39	222	17	280
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	196	1111850	260	40	200	20	259
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	231	1122302	237	43	175	19	231
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	258	1085174	195	26	143	26	188
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.48	213	1114826	258	28	204	26	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1110338	300	45	240	15	281
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	274	33	218	23	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	229	1179985	227	29	173	25	235
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	227	1117817	231	28	188	15	226
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	347	41	290	16	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	118	1015612	321	39	256	26	314
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.28	124	1131316	337	30	290	17	332
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.72	0.71	0.74	325	1117819	142	23	93	26	133
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.48	214	1189204	258	34	201	23	262
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123814	315	46	252	17	323
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.19	0.20	0.18	99	1620353	490	81	367	42	395
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.30	162	1761957	428	86	298	44	357
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	157	1805386	453	81	326	46	364
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	204	1627621	339	47	238	54	298
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.31	167	1988474	452	69	305	78	350
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.20	0.17	94	1769479	492	105	343	44	383
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	153	1891946	449	74	312	63	361
CRW_00338	-	0.13	0.14	0.12	57	1052947	427	76	346	5	338
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	175	1586340	403	71	285	47	323
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.24	127	1614982	437	68	326	43	376
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.35	183	1674845	391	61	276	54	324
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.33	174	1579230	395	88	261	46	308
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.28	143	1640248	420	77	298	45	363
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	145	1611389	409	77	299	33	351
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.35	181	1625787	378	59	279	40	317
CRW_00381	-	0.32	0.33	0.31	184	2303138	513	67	342	104	373
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.23	129	1750683	478	83	361	34	386
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606035	431	65	282	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.34	0.34	169	1615006	381	62	266	53	327
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	140	1665694	436	77	314	45	355
CRW_00417	-	0.38	0.37	0.39	97	458157	161	21	128	12	165
CRW_00418	-	0.24	0.22	0.26	56	441113	170	17	144	9	204
CRW_00419	-	0.19	0.17	0.20	45	463945	187	22	154	11	220
CRW_00421	-	0.38	0.36	0.41	96	462968	155	22	117	16	170
CRW_00422	-	0.36	0.35	0.38	92	455291	171	23	129	19	171
CRW_00426	-	0.30	0.29	0.31	78	457195	183	24	149	10	187
CRW_00427	-	0.18	0.18	0.19	46	454337	212	30	168	14	215
CRW_00428	-	0.39	0.38	0.40	98	465847	162	29	121	12	162
CRW_00430	-	0.18	0.18	0.19	47	456245	207	30	168	9	219
CRW_00433	-	0.35	0.32	0.38	85	467807	142	19	117	6	178
CRW_00434	-	0.38	0.35	0.40	92	457218	146	18	118	10	171
CRW_00435	-	0.36	0.33	0.39	88	451501	148	14	122	12	177
CRW_00437	-	0.21	0.21	0.22	54	456242	197	25	169	3	206
CRW_00438	-	0.35	0.34	0.36	90	454332	170	19	140	11	178
CRW_00441	-	0.17	0.16	0.19	42	454357	187	31	151	5	220
CRW_00442	-	0.37	0.36	0.39	93	453388	156	25	122	9	168
CRW_00443	-	0.39	0.36	0.42	93	456266	153	18	113	22	167
CRW_00444	-	0.27	0.26	0.28	68	459119	181	24	150	7	195
CRW_00445	-	0.28	0.27	0.30	71	458168	175	24	140	11	194
CRW_00446	-	0.46	0.43	0.48	115	468758	135	14	109	12	150
CRW_00447	-	0.27	0.27	0.28	69	452428	194	23	156	15	191
CRW_00448	-	0.34	0.32	0.36	83	457215	169	23	125	21	178
CRW_00449	-	0.22	0.21	0.23	54	444861	185	20	161	4	206
CRW_00451	-	0.21	0.20	0.21	52	457204	204	25	165	14	212
CRW_00452	-	0.31	0.29	0.34	77	453399	174	20	132	22	185
CRW_00453	-	0.34	0.31	0.36	81	452454	150	22	119	9	180
CRW_00458	-	0.32	0.31	0.32	83	464873	185	34	140	11	181
CRW_00459	-	0.29	0.27	0.31	72	462011	176	27	131	18	191
CRW_00460	-	0.27	0.27	0.27	149	1972543	463	72	327	64	395
CRW_00462	-	0.28	0.27	0.30	70	458171	178	16	146	16	191
CRW_00463	-	0.34	0.33	0.35	85	445799	164	22	134	8	169
CRW_00464	-	0.39	0.36	0.42	95	462015	142	15	116	11	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.62	268	1116330	196	21	146	29	190
CRW_00530	-	0.35	0.37	0.33	99	534792	223	55	149	19	169
CRW_00532	-	0.12	0.14	0.11	36	579108	293	84	198	11	229
CRW_00534	-	0.29	0.30	0.28	145	1832136	410	68	306	36	338
CRW_00535	-	0.25	0.27	0.24	89	898092	316	73	216	27	239
CRW_00538	-	0.20	0.22	0.19	65	811827	304	77	206	21	235
CRW_00545	-	0.27	0.29	0.25	56	1343756	374	51	117	206	137
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	374	34	324	16	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	161	1119326	290	30	239	21	291
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.59	251	1098476	205	23	153	29	195
CRW_00594	-	0.22	0.24	0.20	93	1028441	382	52	309	21	302
CRW_00596	-	0.21	0.22	0.21	86	1024181	349	55	274	20	300
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.31	0.33	0.29	162	1665675	440	88	300	52	329
CRW_00604	-	0.52	0.57	0.48	46	411682	214	15	35	164	35
CRW_00606	-	0.66	0.64	0.68	59	559066	266	2	26	238	33
CRW_00607	-	0.55	0.53	0.56	41	536057	274	4	28	242	36
CRW_00617	-	0.66	0.64	0.68	41	426366	236	1	18	217	23
CRW_00678	-	0.66	0.64	0.67	78	666318	274	10	29	235	43
CRW_00684	-	0.34	0.39	0.29	53	611990	298	44	84	170	82
CRW_00704	-	0.81	0.80	0.82	75	386669	198	4	12	182	19
CRW_00706	-	0.45	0.51	0.39	30	695534	340	11	35	294	29
CRW_00709	-	0.07	0.07	0.07	6	1728778	562	20	66	476	79
CRW_00710	-	0.66	0.65	0.67	74	1040293	375	8	28	339	40
CRW_00712	-	0.47	0.54	0.41	58	952747	370	30	55	285	50
CRW_00713	-	0.56	0.57	0.55	58	731339	313	11	37	265	43
CRW_00723	-	0.27	0.35	0.21	26	1583185	519	41	58	420	48
CRW_00725	-	0.38	0.45	0.33	78	1956995	536	46	112	378	96
CRW_00730	-	0.46	0.52	0.41	84	338869	186	39	84	63	77
CRW_00734	-	0.18	0.25	0.13	27	536961	263	99	79	85	83
CRW_00735	-	0.26	0.33	0.20	40	677832	298	85	73	140	81
CRW_00740	-	0.00	0.00	0.00	0	489332	297	100	123	74	113
CRW_00742	-	0.43	0.51	0.36	85	1723060	507	56	95	356	83
CRW_00745	-	0.39	0.45	0.33	69	1343773	422	48	90	284	85
CRW_00746	-	0.45	0.47	0.44	102	550492	206	29	102	75	117
CRW_00750	-	0.39	0.44	0.35	71	709632	301	38	95	168	89
CRW_00753	-	0.15	0.16	0.14	29	489341	277	47	138	92	149
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	144	1640268	416	66	288	62	339
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.22	0.22	0.21	107	1636633	462	78	327	57	374
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.28	140	1638458	411	74	283	54	346
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	165	1215603	304	24	228	52	281
CRW_00766	-	0.27	0.26	0.28	63	440168	177	20	140	17	177
CRW_00768	-	0.40	0.39	0.41	101	471658	164	22	125	17	158
CRW_00769	-	0.39	0.37	0.42	93	451502	148	20	110	18	159
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	103	945610	313	37	250	26	301
CRW_00774	-	0.37	0.36	0.39	94	488322	170	17	133	20	169
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.30	0.29	0.32	113	1201668	314	34	210	70	271
CRW_00779	-	0.30	0.30	0.30	126	1031350	307	35	255	17	296
CRW_00780	-	0.18	0.18	0.19	45	475569	201	21	165	15	210
CRW_00781	-	0.22	0.23	0.21	104	1978559	534	49	343	142	346
CRW_00783	-	0.37	0.36	0.38	93	453382	165	15	138	12	166
CRW_00784	-	0.37	0.35	0.39	93	456254	166	21	122	23	169
CRW_00785	-	0.35	0.33	0.36	84	452443	162	27	122	13	169
CRW_00787	-	0.23	0.24	0.23	74	646626	267	36	217	14	232
CRW_00788	-	0.23	0.24	0.22	85	1758363	476	50	252	174	276
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	160	1137342	302	44	240	18	287
CRW_00790	-	0.18	0.19	0.18	85	1803571	519	41	353	125	362
CRW_00792	-	0.23	0.24	0.23	92	1581124	465	54	261	150	291
CRW_00793	-	0.33	0.34	0.33	127	1048686	318	55	208	55	250
CRW_00794	-	0.24	0.24	0.25	59	434543	196	15	161	20	187
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.21	0.22	0.21	85	1152511	379	51	274	54	309
CRW_00796	-	0.20	0.20	0.21	47	384777	193	27	152	14	188
CRW_00797	-	0.26	0.26	0.26	90	692907	280	33	223	24	252
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.53	0.57	251	1401532	269	24	168	77	219
CRW_00801	-	0.45	0.45	0.46	112	438270	149	29	105	15	137
CRW_00802	-	0.19	0.19	0.19	49	460062	218	33	176	9	204
CRW_00804	-	0.32	0.32	0.31	130	1420037	396	39	249	108	273
CRW_00807	-	0.41	0.40	0.41	161	1391552	340	38	195	107	237
CRW_00808	-	0.37	0.39	0.35	139	1301292	367	81	179	107	217
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.49	227	1117798	259	23	212	24	243
CRW_01134	-	0.25	0.26	0.25	109	964912	341	41	293	7	318
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	160	1606024	390	54	290	46	343
CRW_01168	-	0.39	0.39	0.39	160	900739	274	33	221	20	251
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	167	1593473	402	81	284	37	339
CRW_01186	-	0.27	0.27	0.27	103	836190	293	44	234	15	283
CRW_01188	-	0.17	0.17	0.17	68	837466	339	48	283	8	325
CRW_01189	-	0.21	0.21	0.21	82	862242	334	47	270	17	310
CRW_01214	-	0.29	0.29	0.29	116	931900	288	36	243	9	289
CRW_01222	-	0.23	0.23	0.23	92	912871	321	54	259	8	305
CRW_01250	-	0.31	0.30	0.32	115	781518	257	33	209	15	263
CRW_01260	-	0.15	0.15	0.15	60	912885	340	48	283	9	333
CRW_01266	-	0.28	0.28	0.28	108	818174	292	43	235	14	273
CRW_01275	-	0.30	0.30	0.30	128	1082230	316	45	253	18	304
CRW_01283	-	0.40	0.40	0.40	163	963560	265	37	206	22	246
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	189	1693186	392	71	274	47	326
CRW_01314	-	0.28	0.27	0.29	110	937386	284	37	232	15	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.37	160	977470	284	42	229	13	274
CRW_01344	-	0.30	0.30	0.30	110	791545	267	40	216	11	256
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073408	220	17	174	29	249
PDB_00805	-	0.64	0.61	0.67	184	467752	116	18	74	24	118
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	284	1500271	276	22	201	53	251
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	191	1470959	352	45	275	32	356
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	306	1605999	254	32	191	31	256
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.63	313	1433471	221	15	172	34	227
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	228	1204659	250	31	210	9	299
PDB_01261	-	0.50	0.45	0.55	152	467752	128	4	120	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	237	1117812	242	21	190	31	254

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]