CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Contrafold		UNAFold
MCC	0.466	>	0.379
Average MCC ± 95% Confidence Intervals	0.463 ± 0.018	>	0.376 ± 0.017
Sensitivity	0.447	>	0.379
Positive Predictive Value	0.487	>	0.379
Total TP	51711	>	43868
Total TN	437656708	>	437647307
Total FP	77585	<	92813
Total FP CONTRA	8664	<	12413
Total FP INCONS	45906	<	59401
Total FP COMP	23015	>	20999
Total FN	63926	<	71769
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Contrafold and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Contrafold and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Contrafold and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Contrafold and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Contrafold and UNAFold).

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Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	51711
Total TN	437656708
Total FP	77585
Total FP CONTRA	8664
Total FP INCONS	45906
Total FP COMP	23015
Total FN	63926

Total Scores
MCC	0.466
Average MCC ± 95% Confidence Intervals	0.463 ± 0.018
Sensitivity	0.447
Positive Predictive Value	0.487
Nr of predictions	273

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2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.62	0.55	0.69	115	3173773	576	9	43	524	94
CRW_00002	-	0.72	0.62	0.82	164	408861	79	5	30	44	100
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.77	0.78	351	1085153	140	12	85	43	107
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.68	320	1141844	188	22	130	36	154
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.64	268	1170795	174	25	127	22	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	237	1107395	202	25	159	18	219
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.60	0.67	286	1172318	164	20	122	22	187
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	274	1181504	188	29	146	13	202
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.53	231	1108865	226	32	177	17	226
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.57	245	1178450	213	19	166	28	220
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.56	0.52	0.61	243	1135878	175	14	143	18	220
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	287	1201577	192	19	142	31	189
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.59	237	1152519	185	22	143	20	229
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	233	1180006	196	22	155	19	238
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.62	0.59	0.64	277	1190763	182	19	137	26	191
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.35	150	1082228	288	32	246	10	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	228	1178444	227	20	188	19	245
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.57	0.55	0.59	259	1207798	197	27	151	19	216
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	250	1198476	220	27	173	20	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.51	0.55	229	1105912	212	23	164	25	224
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.66	301	1218683	200	21	136	43	183
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.61	267	1198490	184	24	145	15	211
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	206	1192327	232	26	181	25	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.69	286	1111874	157	20	106	31	169
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	221	1122337	215	30	163	22	241
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	203	1085190	233	20	188	25	243
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.63	271	1114843	186	19	138	29	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.40	0.49	182	1110423	203	23	167	13	271
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.47	190	1129849	240	28	189	23	260
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.64	262	1180004	173	25	125	23	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.60	232	1117873	173	15	140	18	221
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	288	1144901	182	17	135	30	176
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.41	0.38	0.45	162	1015668	217	29	166	22	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	216	1131371	196	24	149	23	240
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.68	289	1117836	159	19	116	24	169
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.63	270	1189221	197	21	141	35	206
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	165	1123842	258	35	208	15	296
CRW_00294	-	0.40	0.39	0.40	230	2620330	464	67	278	119	356
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	122	1620403	431	72	303	56	372
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.43	0.40	0.45	210	1762038	324	41	214	69	309
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.29	129	1445402	388	63	256	69	333
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.37	184	1805456	377	53	257	67	337
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.50	0.49	0.51	246	1627630	284	52	182	50	256
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.33	166	1988512	422	56	281	85	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	122	1769544	429	70	285	74	355
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.41	183	1892040	342	42	220	80	331
CRW_00338	-	0.20	0.21	0.19	84	1052972	396	77	293	26	311
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.39	197	1586366	355	58	250	47	301
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1584577	358	54	257	47	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.36	170	1615029	355	51	253	51	333
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.38	202	1674827	390	57	279	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	157	1579284	361	57	255	49	325
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.37	189	1640256	363	64	257	42	317
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.41	0.46	205	1611467	295	42	196	57	291
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.41	0.40	0.42	198	1625830	342	48	230	64	300
CRW_00374	-	0.40	0.39	0.41	217	2182480	418	42	266	110	333
CRW_00375	-	0.37	0.36	0.38	197	2298928	401	55	260	86	344
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.43	0.42	0.44	223	2126443	372	38	249	85	311
CRW_00381	-	0.40	0.38	0.41	214	2303211	410	37	269	104	343
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.28	0.30	0.27	152	1750697	447	70	337	40	363
CRW_00400	-	0.27	0.27	0.28	134	2677974	538	57	290	191	360
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.28	131	1606062	404	68	267	69	333
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.36	0.42	181	1615070	306	41	211	54	315
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.36	181	1665721	382	54	269	59	314
CRW_00417	-	0.41	0.38	0.44	99	458178	135	23	103	9	163
CRW_00418	-	0.26	0.22	0.31	56	441150	130	14	110	6	204
CRW_00419	-	0.40	0.35	0.45	93	463958	122	7	108	7	172
CRW_00421	-	0.50	0.44	0.57	117	462998	111	10	78	23	149
CRW_00422	-	0.44	0.40	0.49	105	455320	131	13	97	21	158
CRW_00424	-	0.49	0.45	0.52	164	789083	172	18	131	23	199
CRW_00426	-	0.42	0.39	0.45	103	457219	137	13	111	13	162
CRW_00427	-	0.28	0.26	0.29	69	454346	182	30	136	16	192
CRW_00428	-	0.37	0.33	0.40	87	465879	144	17	112	15	173
CRW_00430	-	0.39	0.32	0.48	85	456313	101	17	75	9	181
CRW_00433	-	0.33	0.28	0.40	73	467844	115	12	99	4	190
CRW_00434	-	0.48	0.40	0.56	106	457257	91	9	74	8	157
CRW_00435	-	0.30	0.26	0.34	68	451527	139	21	109	9	197
CRW_00437	-	0.25	0.22	0.29	57	456294	151	16	123	12	203
CRW_00438	-	0.39	0.34	0.44	92	454372	126	15	102	9	176
CRW_00441	-	0.37	0.31	0.44	80	454400	110	12	89	9	182
CRW_00442	-	0.32	0.28	0.37	74	453426	139	14	114	11	187
CRW_00443	-	0.34	0.26	0.43	68	456333	107	8	81	18	192
CRW_00444	-	0.45	0.38	0.53	100	459174	99	15	72	12	163
CRW_00445	-	0.43	0.40	0.47	105	458179	127	19	100	8	160
CRW_00446	-	0.33	0.31	0.36	81	468771	157	18	126	13	184
CRW_00447	-	0.29	0.27	0.30	71	452442	174	23	140	11	189
CRW_00448	-	0.29	0.26	0.34	67	457247	143	23	109	11	194
CRW_00449	-	0.42	0.37	0.48	95	444897	111	20	84	7	165
CRW_00450	-	0.43	0.36	0.53	94	458224	101	11	74	16	168
CRW_00451	-	0.43	0.38	0.49	99	457244	114	11	92	11	165
CRW_00452	-	0.49	0.41	0.59	108	453445	94	7	68	19	154
CRW_00453	-	0.38	0.32	0.44	84	452487	117	13	92	12	177
CRW_00454	-	0.24	0.24	0.24	105	1730300	445	60	265	120	330
CRW_00456	-	0.45	0.37	0.56	98	470760	83	10	67	6	167
CRW_00457	-	0.44	0.41	0.48	107	467803	134	17	101	16	157
CRW_00458	-	0.48	0.42	0.54	111	464926	106	9	84	13	153
CRW_00459	-	0.52	0.46	0.58	121	462032	112	10	78	24	142
CRW_00460	-	0.39	0.35	0.43	193	1972641	344	20	237	87	351
CRW_00462	-	0.46	0.40	0.53	104	458208	107	10	81	16	157
CRW_00463	-	0.44	0.40	0.49	101	445832	116	18	89	9	153
CRW_00464	-	0.46	0.38	0.55	101	462056	95	8	76	11	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.70	0.68	0.73	312	1116336	148	19	98	31	146
CRW_00468	-	0.55	0.54	0.56	465	4290161	413	52	307	54	390
CRW_00471	-	0.55	0.53	0.57	461	4211438	388	52	302	34	410
CRW_00474	-	0.62	0.60	0.64	505	3976820	335	60	225	50	331
CRW_00476	-	0.63	0.60	0.67	525	4278490	308	43	217	48	354
CRW_00478	-	0.69	0.66	0.73	572	4150736	259	41	172	46	291
CRW_00487	-	0.59	0.56	0.62	491	4223083	351	43	254	54	381
CRW_00488	-	0.53	0.50	0.55	445	4325406	401	42	318	41	441
CRW_00490	-	0.40	0.40	0.41	344	4144922	525	63	431	31	518
CRW_00495	-	0.54	0.52	0.56	446	4205659	395	51	294	50	412
CRW_00496	-	0.57	0.54	0.60	464	4194083	357	35	274	48	402
CRW_00497	-	0.55	0.54	0.55	444	4402224	425	46	314	65	378
CRW_00499	-	0.57	0.55	0.59	484	4372585	380	44	290	46	399
CRW_00500	-	0.54	0.53	0.55	463	4205614	421	56	317	48	405
CRW_00501	-	0.58	0.56	0.60	485	4284323	369	51	269	49	383
CRW_00502	-	0.67	0.65	0.69	567	4296026	311	42	211	58	305
CRW_00503	-	0.45	0.44	0.46	383	4252162	479	61	380	38	484
CRW_00507	-	0.59	0.56	0.62	483	4173826	342	38	258	46	382
CRW_00509	-	0.55	0.53	0.58	459	4182488	368	44	287	37	408
CRW_00511	-	0.47	0.45	0.49	381	4107641	432	39	350	43	475
CRW_00512	-	0.59	0.56	0.61	460	3814952	334	52	239	43	359
CRW_00516	-	0.62	0.59	0.66	516	4272643	324	42	225	57	360
CRW_00518	-	0.47	0.45	0.50	394	4357835	427	61	338	28	490
CRW_00519	-	0.72	0.71	0.72	594	4246334	314	40	187	87	238
CRW_00520	-	0.63	0.59	0.66	505	4208590	309	55	201	53	345
CRW_00521	-	0.45	0.43	0.48	360	4136374	420	58	334	28	484
CRW_00522	-	0.32	0.30	0.33	238	3642926	513	86	400	27	544
CRW_00525	-	0.28	0.30	0.27	240	4058925	709	88	572	49	573
CRW_00530	-	0.35	0.34	0.37	91	534848	170	47	109	14	177
CRW_00532	-	0.26	0.25	0.26	66	579174	202	50	136	16	199
CRW_00533	-	0.42	0.42	0.42	92	453409	172	30	97	45	127
CRW_00534	-	0.47	0.45	0.49	219	1832209	275	43	184	48	264
CRW_00535	-	0.37	0.37	0.38	121	898149	221	45	155	21	207
CRW_00538	-	0.41	0.38	0.45	113	811923	164	23	116	25	187
CRW_00542	-	0.28	0.30	0.27	95	994401	299	70	189	40	222
CRW_00545	-	0.40	0.40	0.40	77	1343788	300	25	90	185	116
CRW_00547	-	0.59	0.57	0.61	492	4278470	368	53	260	55	371
CRW_00579	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00583	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.33	0.30	0.36	134	1094090	257	24	212	21	311
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	157	1119345	281	41	213	27	295
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.65	268	1098489	182	28	118	36	178
CRW_00594	-	0.23	0.24	0.22	96	1028467	363	49	283	31	299
CRW_00596	-	0.24	0.25	0.24	95	1024193	335	44	264	27	291
CRW_00597	-	0.27	0.28	0.27	115	1200049	353	41	270	42	296
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	193	1665739	354	59	234	61	298
CRW_00599	-	0.40	0.40	0.41	216	3754638	682	45	271	366	330
CRW_00604	-	0.84	0.85	0.82	69	411694	186	4	11	171	12
CRW_00606	-	0.93	0.90	0.97	83	559067	236	0	3	233	9
CRW_00607	-	0.81	0.82	0.81	63	536052	269	3	12	254	14
CRW_00615	-	0.86	0.85	0.88	70	553798	271	0	10	261	12
CRW_00616	-	0.60	0.58	0.62	64	1699142	445	5	35	405	46
CRW_00617	-	0.57	0.55	0.60	35	426368	211	6	17	188	29
CRW_00678	-	0.42	0.44	0.40	53	666302	315	14	66	235	68
CRW_00680	-	0.53	0.55	0.52	67	516506	229	17	46	166	55
CRW_00683	-	0.63	0.63	0.63	85	460186	216	2	47	167	50
CRW_00684	-	0.53	0.55	0.51	74	612025	266	16	56	194	61
CRW_00702	-	0.72	0.73	0.71	55	357357	187	7	16	164	20
CRW_00704	-	0.87	0.87	0.87	82	386666	195	4	8	183	12
CRW_00705	-	0.26	0.29	0.23	25	1461086	417	29	55	333	61
CRW_00706	-	0.64	0.71	0.58	42	695537	308	13	18	277	17
CRW_00708	-	0.51	0.56	0.46	37	3457054	690	17	27	646	29
CRW_00709	-	0.23	0.19	0.29	16	1728814	485	1	39	445	69
CRW_00710	-	0.69	0.64	0.74	73	1040304	312	2	24	286	41
CRW_00711	-	0.23	0.24	0.21	30	2318638	605	50	63	492	94
CRW_00712	-	0.44	0.48	0.39	52	952758	374	24	56	294	56
CRW_00713	-	0.80	0.77	0.84	78	731352	295	5	10	280	23
CRW_00723	-	0.60	0.58	0.62	43	1583241	438	9	17	412	31
CRW_00724	-	0.85	0.84	0.86	148	3231981	567	9	15	543	28
CRW_00725	-	0.55	0.59	0.52	102	1957033	455	34	62	359	72
CRW_00726	-	0.90	0.90	0.91	168	3378515	590	4	13	573	19
CRW_00730	-	0.48	0.49	0.48	79	338910	157	15	72	70	82
CRW_00732	-	0.35	0.40	0.30	47	3401978	655	37	74	544	70
CRW_00734	-	0.45	0.43	0.47	47	537065	184	20	34	130	63
CRW_00735	-	0.52	0.57	0.47	69	677883	231	42	36	153	52
CRW_00740	-	0.14	0.17	0.12	19	489398	229	53	85	91	94
CRW_00742	-	0.83	0.83	0.84	139	1723131	386	5	21	360	29
CRW_00743	-	0.55	0.66	0.46	98	2224782	543	58	57	428	51
CRW_00744	-	0.72	0.70	0.73	131	3433331	678	12	36	630	55
CRW_00745	-	0.66	0.69	0.63	107	1343810	322	19	44	259	47
CRW_00746	-	0.53	0.53	0.55	115	550514	165	22	74	69	104
CRW_00747	-	0.22	0.23	0.22	43	3722161	688	37	115	536	145
CRW_00749	-	0.42	0.45	0.40	81	3058898	650	25	97	528	98
CRW_00750	-	0.60	0.61	0.59	98	709671	249	18	49	182	62
CRW_00751	-	0.78	0.76	0.80	136	489385	143	3	31	109	42
CRW_00752	-	0.63	0.58	0.68	106	2975425	572	16	33	523	78
CRW_00753	-	0.25	0.26	0.24	46	489360	233	42	107	84	132
CRW_00757	-	0.21	0.25	0.18	31	415246	217	58	81	78	95
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	170	1640283	375	51	262	62	313
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	145	1636697	372	51	252	69	336
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.37	0.36	0.37	176	1638485	358	65	229	64	310
CRW_00761	-	0.24	0.24	0.24	113	2863958	623	51	299	273	361
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.44	144	1215694	231	27	155	49	302
CRW_00765	-	0.43	0.39	0.47	101	452459	126	21	95	10	156
CRW_00766	-	0.27	0.23	0.31	56	440213	138	20	102	16	184
CRW_00768	-	0.61	0.55	0.68	143	471695	100	7	61	32	116
CRW_00769	-	0.48	0.43	0.53	108	451522	115	21	74	20	144
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	148	945666	215	18	168	29	256
CRW_00773	-	0.48	0.45	0.51	116	451497	135	19	93	23	143
CRW_00774	-	0.44	0.40	0.49	105	488352	131	8	101	22	158
CRW_00777	-	0.43	0.42	0.45	127	719119	199	27	127	45	177
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	174	1201730	163	16	105	42	210
CRW_00779	-	0.37	0.36	0.39	150	1031380	264	22	214	28	272
CRW_00780	-	0.32	0.29	0.35	74	475591	151	18	117	16	181
CRW_00781	-	0.26	0.25	0.26	112	1978630	474	35	278	161	338
CRW_00783	-	0.39	0.33	0.45	86	453437	121	12	93	16	173
CRW_00784	-	0.41	0.37	0.45	96	456279	134	19	96	19	166
CRW_00785	-	0.54	0.48	0.62	122	452478	89	12	64	13	131
CRW_00786	-	0.38	0.37	0.38	167	1946914	424	48	222	154	283
CRW_00787	-	0.49	0.45	0.53	138	646691	151	13	111	27	168
CRW_00788	-	0.36	0.33	0.40	119	1758455	393	31	145	217	242
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.48	0.44	0.53	196	1137416	209	14	160	35	251
CRW_00790	-	0.26	0.26	0.27	115	1803619	442	38	278	126	332
CRW_00792	-	0.36	0.34	0.38	130	1581187	378	24	190	164	253
CRW_00793	-	0.54	0.50	0.59	189	1048753	210	26	108	76	188
CRW_00794	-	0.37	0.35	0.39	85	434558	154	20	115	19	161
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.38	131	1152575	263	22	193	48	263
CRW_00796	-	0.36	0.29	0.45	69	384851	109	2	81	26	166
CRW_00797	-	0.33	0.30	0.38	101	692984	189	25	143	21	241
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.60	253	1401550	230	21	151	58	217
CRW_00801	-	0.47	0.45	0.49	113	438286	131	27	90	14	136
CRW_00802	-	0.42	0.39	0.45	99	460102	145	19	100	26	154
CRW_00803	-	0.27	0.27	0.26	123	1952808	452	64	281	107	326
CRW_00804	-	0.41	0.37	0.45	148	1420127	285	21	159	105	255
CRW_00806	-	0.28	0.28	0.29	125	1913511	410	53	257	100	324
CRW_00807	-	0.52	0.47	0.56	188	1391613	233	14	131	88	210
CRW_00808	-	0.31	0.29	0.33	103	1301378	324	43	167	114	253
CRW_00813	-	0.44	0.47	0.41	63	530812	220	29	61	130	70
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	265	1117797	226	19	179	28	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	280	1135838	187	19	141	27	184
CRW_01134	-	0.38	0.35	0.41	148	964992	225	35	180	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	194	1606043	347	52	239	56	309
CRW_01168	-	0.50	0.48	0.53	196	900783	197	25	149	23	215
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.44	0.47	221	1593534	302	49	201	52	285
CRW_01186	-	0.40	0.38	0.42	146	836224	219	23	178	18	240
CRW_01188	-	0.20	0.20	0.20	77	837476	320	47	265	8	316
CRW_01189	-	0.23	0.23	0.23	92	862249	314	44	256	14	300
CRW_01214	-	0.30	0.28	0.32	114	931943	252	28	210	14	291
CRW_01222	-	0.30	0.28	0.33	113	912930	241	48	185	8	284
CRW_01224	-	0.40	0.36	0.45	141	912960	188	17	158	13	256
CRW_01239	-	0.24	0.23	0.25	88	840107	271	42	219	10	294
CRW_01250	-	0.45	0.41	0.49	155	781556	186	19	145	22	223
CRW_01260	-	0.23	0.20	0.25	80	912961	256	30	205	21	313
CRW_01266	-	0.35	0.35	0.34	134	818168	277	41	217	19	247
CRW_01271	-	0.32	0.32	0.32	121	827157	280	31	232	17	260
CRW_01275	-	0.38	0.37	0.40	160	1082251	264	41	204	19	272
CRW_01283	-	0.33	0.30	0.36	123	963626	238	25	192	21	286
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.38	0.37	0.38	193	1693217	355	53	257	45	322
CRW_01314	-	0.30	0.28	0.33	114	937422	242	30	199	13	293
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.44	0.48	189	977509	217	30	173	14	245
CRW_01344	-	0.28	0.27	0.30	98	791579	243	31	203	9	268
CRW_01456	-	0.33	0.33	0.34	282	4240489	586	69	488	29	569
PDB_00187	-	0.39	0.40	0.39	283	3746236	520	91	343	86	433
PDB_00401	-	0.51	0.47	0.55	446	3996572	408	28	332	48	507
PDB_00409	-	0.35	0.40	0.30	99	688225	317	68	159	90	146
PDB_00609	-	0.37	0.38	0.37	297	4156478	570	86	425	59	493
PDB_00644	-	0.38	0.38	0.38	309	4328331	575	84	429	62	511
PDB_00675	-	0.51	0.47	0.56	453	4168012	414	25	338	51	521
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073403	229	19	177	33	249
PDB_00704	-	0.53	0.48	0.58	468	4249258	397	31	313	53	505
PDB_00805	-	0.66	0.64	0.68	193	467745	126	7	83	36	109
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	264	1500266	296	25	223	48	271
PDB_00947	-	0.67	0.67	0.68	503	4310772	422	63	178	181	246
PDB_00993	-	0.37	0.37	0.37	297	3923402	548	84	418	46	505
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	236	1470988	271	34	212	25	311
PDB_01089	-	0.58	0.58	0.59	438	4053385	428	79	226	123	321
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.56	301	1605989	279	31	207	41	261
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	303	1433467	242	16	185	41	237
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.44	0.55	232	1204703	216	20	173	23	295
PDB_01140	-	0.65	0.62	0.69	573	4176662	336	53	207	76	357
PDB_01261	-	0.79	0.69	0.90	233	467769	32	2	24	6	103
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.51	232	1117807	258	16	205	37	259

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	43868
Total TN	437647307
Total FP	92813
Total FP CONTRA	12413
Total FP INCONS	59401
Total FP COMP	20999
Total FN	71769

Total Scores
MCC	0.379
Average MCC ± 95% Confidence Intervals	0.376 ± 0.017
Sensitivity	0.379
Positive Predictive Value	0.379
Nr of predictions	273

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.45	0.44	0.46	93	3173737	661	15	95	551	116
CRW_00002	-	0.55	0.54	0.56	143	408803	127	31	83	13	121
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.25	0.24	0.25	103	1015621	323	37	264	22	329
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.43	184	1123823	255	41	202	12	277
CRW_00294	-	0.31	0.33	0.29	191	2620252	546	107	355	84	395
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00338	-	0.15	0.16	0.14	64	1052953	413	75	334	4	331
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00374	-	0.44	0.44	0.44	244	2182449	395	57	255	83	306
CRW_00375	-	0.28	0.29	0.27	158	2298864	499	77	341	81	383
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00381	-	0.30	0.31	0.30	174	2303144	499	73	340	86	383
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00400	-	0.19	0.20	0.18	98	2677906	616	88	363	165	396
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00417	-	0.39	0.38	0.40	99	458154	161	21	129	11	163
CRW_00418	-	0.22	0.20	0.24	52	441115	174	21	142	11	208
CRW_00419	-	0.20	0.18	0.21	49	463930	194	17	170	7	216
CRW_00421	-	0.31	0.30	0.33	79	462964	173	28	132	13	187
CRW_00422	-	0.37	0.36	0.38	95	455287	170	24	129	17	168
CRW_00424	-	0.38	0.39	0.38	140	789031	251	22	203	26	223
CRW_00426	-	0.34	0.33	0.35	88	457193	175	23	142	10	177
CRW_00427	-	0.21	0.21	0.22	54	454337	205	33	157	15	207
CRW_00428	-	0.38	0.38	0.38	98	465840	170	32	125	13	162
CRW_00430	-	0.45	0.42	0.49	112	456262	128	20	96	12	154
CRW_00433	-	0.29	0.26	0.32	68	467817	148	21	122	5	195
CRW_00434	-	0.31	0.29	0.33	75	457220	157	19	132	6	188
CRW_00435	-	0.45	0.42	0.49	110	451500	126	9	106	11	155
CRW_00437	-	0.21	0.21	0.22	54	456247	191	23	166	2	206
CRW_00438	-	0.34	0.32	0.37	87	454343	161	16	135	10	181
CRW_00441	-	0.17	0.16	0.18	42	454353	190	32	154	4	220
CRW_00442	-	0.38	0.36	0.40	94	453393	149	25	116	8	167
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00444	-	0.30	0.29	0.32	76	459122	172	24	139	9	187
CRW_00445	-	0.30	0.28	0.33	75	458173	164	23	132	9	190
CRW_00446	-	0.36	0.33	0.38	88	468765	157	17	126	14	177
CRW_00447	-	0.33	0.32	0.35	82	452443	167	16	135	16	178
CRW_00448	-	0.34	0.33	0.36	85	457211	168	28	122	18	176
CRW_00449	-	0.15	0.15	0.16	38	444860	198	34	164	0	222
CRW_00450	-	0.34	0.32	0.36	83	458172	162	19	129	14	179
CRW_00451	-	0.24	0.22	0.26	59	457222	181	21	144	16	205
CRW_00452	-	0.29	0.26	0.31	69	453407	169	26	126	17	193
CRW_00453	-	0.23	0.21	0.24	56	452447	180	35	138	7	205
CRW_00454	-	0.16	0.16	0.17	69	1730315	473	57	289	127	366
CRW_00456	-	0.44	0.41	0.47	108	470706	137	19	102	16	157
CRW_00457	-	0.38	0.36	0.40	95	467788	159	28	117	14	169
CRW_00458	-	0.46	0.44	0.48	115	464891	141	21	103	17	149
CRW_00459	-	0.55	0.51	0.58	135	462008	117	16	82	19	128
CRW_00460	-	0.30	0.30	0.30	161	1972561	446	49	320	77	383
CRW_00462	-	0.18	0.16	0.19	43	458180	198	21	159	18	218
CRW_00463	-	0.39	0.38	0.40	97	445799	154	21	123	10	157
CRW_00464	-	0.38	0.35	0.42	92	462021	139	14	114	11	172
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00468	-	0.48	0.48	0.47	408	4290123	488	76	378	34	447
CRW_00471	-	0.52	0.51	0.53	445	4211420	422	70	318	34	426
CRW_00474	-	0.45	0.44	0.45	371	3976793	477	67	379	31	465
CRW_00476	-	0.37	0.37	0.37	323	4278391	590	78	483	29	556
CRW_00478	-	0.52	0.52	0.53	445	4150683	417	70	323	24	418
CRW_00487	-	0.48	0.47	0.49	409	4223041	450	72	349	29	463
CRW_00488	-	0.36	0.36	0.37	318	4325352	560	78	463	19	568
CRW_00490	-	0.40	0.39	0.40	339	4144915	541	70	436	35	523
CRW_00495	-	0.38	0.37	0.38	319	4205611	549	60	460	29	539
CRW_00496	-	0.42	0.41	0.43	354	4194028	503	59	415	29	512
CRW_00497	-	0.40	0.40	0.40	329	4402212	539	70	417	52	493
CRW_00499	-	0.40	0.39	0.40	343	4372553	528	65	442	21	540
CRW_00500	-	0.45	0.44	0.45	385	4205593	497	68	404	25	483
CRW_00501	-	0.46	0.46	0.47	399	4284272	487	77	380	30	469
CRW_00502	-	0.52	0.52	0.53	456	4295979	445	73	338	34	416
CRW_00503	-	0.41	0.41	0.42	354	4252133	529	73	426	30	513
CRW_00507	-	0.32	0.32	0.32	278	4173747	595	64	516	15	587
CRW_00509	-	0.46	0.45	0.48	392	4182454	467	68	364	35	475
CRW_00511	-	0.37	0.36	0.37	309	4107578	542	55	469	18	547
CRW_00512	-	0.50	0.50	0.51	409	3814897	424	61	336	27	410
CRW_00516	-	0.51	0.51	0.52	448	4272559	453	67	352	34	428
CRW_00518	-	0.25	0.25	0.26	220	4357775	642	74	559	9	664
CRW_00519	-	0.55	0.55	0.54	461	4246298	452	57	339	56	371
CRW_00520	-	0.42	0.42	0.42	354	4208514	507	81	402	24	496
CRW_00521	-	0.32	0.31	0.32	265	4136305	581	77	479	25	579
CRW_00522	-	0.20	0.21	0.20	164	3642825	687	115	546	26	618
CRW_00525	-	0.30	0.31	0.28	254	4058917	690	83	571	36	559
CRW_00530	-	0.26	0.28	0.25	74	534802	233	55	164	14	194
CRW_00532	-	0.15	0.16	0.14	42	579121	281	61	202	18	223
CRW_00533	-	0.20	0.22	0.18	48	453354	262	61	165	36	171
CRW_00534	-	0.30	0.31	0.29	149	1832140	399	78	288	33	334
CRW_00535	-	0.26	0.28	0.25	91	898105	293	66	208	19	237
CRW_00538	-	0.19	0.20	0.18	59	811850	285	65	201	19	241
CRW_00542	-	0.20	0.23	0.18	72	994346	357	100	237	20	245
CRW_00545	-	0.19	0.21	0.17	40	1343749	405	57	134	214	153
CRW_00547	-	0.46	0.46	0.47	397	4278426	479	61	391	27	466
CRW_00579	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00583	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00594	-	0.23	0.24	0.22	94	1028460	369	47	294	28	301
CRW_00596	-	0.21	0.22	0.20	85	1024169	356	69	273	14	301
CRW_00597	-	0.24	0.25	0.23	101	1200045	369	48	281	40	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00599	-	0.35	0.36	0.34	195	3754588	700	77	310	313	351
CRW_00604	-	0.82	0.86	0.79	70	411689	188	10	9	169	11
CRW_00606	-	0.87	0.84	0.91	77	559068	251	0	8	243	15
CRW_00607	-	0.54	0.53	0.55	41	536056	268	10	23	235	36
CRW_00615	-	0.50	0.56	0.45	46	553776	279	21	35	223	36
CRW_00616	-	0.61	0.59	0.63	65	1699143	504	2	36	466	45
CRW_00617	-	0.41	0.45	0.38	29	426349	237	15	33	189	35
CRW_00678	-	0.41	0.45	0.37	55	666287	299	23	70	206	66
CRW_00680	-	0.32	0.36	0.28	44	516477	258	32	83	143	78
CRW_00683	-	0.50	0.50	0.49	68	460182	221	18	52	151	67
CRW_00684	-	0.35	0.37	0.32	50	612016	279	36	69	174	85
CRW_00702	-	0.57	0.64	0.51	48	357341	200	16	30	154	27
CRW_00704	-	0.80	0.79	0.82	74	386670	190	4	12	174	20
CRW_00705	-	0.29	0.37	0.22	32	1461052	464	50	61	353	54
CRW_00706	-	0.37	0.41	0.34	24	695539	343	11	36	296	35
CRW_00708	-	0.49	0.65	0.37	43	3457019	742	55	18	669	23
CRW_00709	-	0.23	0.22	0.24	19	1728790	569	8	53	508	66
CRW_00710	-	0.66	0.65	0.67	74	1040293	368	8	28	332	40
CRW_00711	-	0.28	0.30	0.26	37	2318636	603	35	73	495	87
CRW_00712	-	0.46	0.53	0.40	57	952749	364	30	54	280	51
CRW_00713	-	0.67	0.65	0.69	66	731349	298	5	25	268	35
CRW_00723	-	0.46	0.57	0.37	42	1583195	497	40	33	424	32
CRW_00724	-	0.57	0.62	0.52	109	3231945	615	22	77	516	67
CRW_00725	-	0.45	0.51	0.40	89	1957011	506	34	97	375	85
CRW_00726	-	0.66	0.67	0.65	125	3378509	627	20	46	561	62
CRW_00730	-	0.51	0.55	0.48	88	338891	172	28	69	75	73
CRW_00732	-	0.36	0.44	0.28	52	3401953	710	70	61	579	65
CRW_00734	-	0.19	0.25	0.15	27	536983	264	76	80	108	83
CRW_00735	-	0.26	0.37	0.18	45	677784	313	116	85	112	76
CRW_00740	-	0.01	0.02	0.01	2	489366	281	77	110	94	111
CRW_00742	-	0.42	0.49	0.36	83	1723063	498	56	94	348	85
CRW_00743	-	0.41	0.52	0.33	78	2224756	592	83	78	431	71
CRW_00744	-	0.71	0.78	0.65	145	3433288	702	37	40	625	41
CRW_00745	-	0.41	0.48	0.36	74	1343772	403	51	83	269	80
CRW_00746	-	0.55	0.58	0.52	128	550477	181	33	87	61	91
CRW_00747	-	0.16	0.18	0.15	34	3722125	790	49	148	593	154
CRW_00749	-	0.64	0.65	0.63	117	3058916	638	13	55	570	62
CRW_00750	-	0.39	0.44	0.35	70	709638	293	37	91	165	90
CRW_00751	-	0.59	0.63	0.54	113	489346	182	36	60	86	65
CRW_00752	-	0.34	0.41	0.28	76	2975313	664	68	123	473	108
CRW_00753	-	0.07	0.07	0.06	13	489343	289	36	163	90	165
CRW_00757	-	0.09	0.11	0.08	14	415240	259	54	108	97	112
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00761	-	0.20	0.21	0.19	98	2863901	663	82	340	241	376
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.29	0.27	0.30	122	1215612	330	26	260	44	324
CRW_00765	-	0.24	0.24	0.24	62	452416	208	36	162	10	195
CRW_00766	-	0.23	0.22	0.23	53	440165	188	28	145	15	187
CRW_00768	-	0.56	0.54	0.58	141	471663	124	14	88	22	118
CRW_00769	-	0.37	0.35	0.39	88	451499	151	24	114	13	164
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00773	-	0.47	0.47	0.48	121	451471	151	28	105	18	138
CRW_00774	-	0.34	0.32	0.37	85	488335	171	20	126	25	178
CRW_00777	-	0.29	0.29	0.29	88	719096	251	36	180	35	216
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	123	1201647	309	46	209	54	261
CRW_00779	-	0.29	0.28	0.29	120	1031355	310	39	252	19	302
CRW_00780	-	0.36	0.35	0.37	89	475561	163	24	126	13	166
CRW_00781	-	0.18	0.20	0.17	90	1978527	535	77	361	97	360
CRW_00783	-	0.35	0.34	0.36	87	453385	167	15	141	11	172
CRW_00784	-	0.34	0.33	0.36	86	456249	169	29	126	14	176
CRW_00785	-	0.30	0.29	0.32	73	452445	165	31	127	7	180
CRW_00786	-	0.41	0.42	0.41	187	1946898	430	36	230	164	263
CRW_00787	-	0.23	0.24	0.23	72	646633	257	40	208	9	234
CRW_00788	-	0.35	0.36	0.34	131	1758365	426	62	192	172	230
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00790	-	0.16	0.17	0.15	74	1803544	496	75	357	64	373
CRW_00792	-	0.24	0.26	0.23	99	1581092	444	81	259	104	284
CRW_00793	-	0.32	0.33	0.31	124	1048682	323	53	217	53	253
CRW_00794	-	0.23	0.23	0.23	56	434530	209	20	172	17	190
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00796	-	0.25	0.23	0.26	55	384793	177	24	131	22	180
CRW_00797	-	0.29	0.29	0.29	98	692914	265	38	203	24	244
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.51	0.51	0.52	238	1401519	271	33	185	53	232
CRW_00801	-	0.46	0.45	0.46	113	438272	150	28	103	19	136
CRW_00802	-	0.25	0.24	0.25	61	460079	192	36	144	12	192
CRW_00803	-	0.25	0.28	0.23	125	1952727	493	86	338	69	324
CRW_00804	-	0.34	0.34	0.33	137	1420043	397	43	232	122	266
CRW_00806	-	0.25	0.28	0.23	125	1913403	482	86	332	64	324
CRW_00807	-	0.25	0.26	0.25	102	1391535	411	56	253	102	296
CRW_00808	-	0.20	0.21	0.19	74	1301303	411	68	246	97	282
CRW_00813	-	0.17	0.20	0.14	27	530778	295	47	113	135	106
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01134	-	0.34	0.33	0.34	142	964943	281	42	228	11	285
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01168	-	0.33	0.33	0.33	136	900740	294	43	234	17	275
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01186	-	0.23	0.23	0.23	89	836190	303	44	248	11	297
CRW_01188	-	0.11	0.11	0.11	42	837482	347	50	291	6	351
CRW_01189	-	0.19	0.19	0.19	74	862254	323	55	258	10	318
CRW_01214	-	0.35	0.33	0.36	135	931923	248	39	198	11	270
CRW_01222	-	0.24	0.24	0.25	96	912886	298	54	240	4	301
CRW_01224	-	0.32	0.30	0.33	121	912914	248	29	212	7	276
CRW_01239	-	0.19	0.19	0.19	71	840087	311	46	252	13	311
CRW_01250	-	0.24	0.23	0.24	87	781517	284	38	233	13	291
CRW_01260	-	0.14	0.13	0.14	52	912906	325	45	273	7	341
CRW_01266	-	0.24	0.24	0.24	91	818175	306	39	255	12	290
CRW_01271	-	0.30	0.30	0.29	113	827157	283	32	239	12	268
CRW_01275	-	0.32	0.32	0.32	139	1082223	310	46	248	16	293
CRW_01283	-	0.37	0.36	0.38	149	963574	261	40	203	18	260
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
CRW_01314	-	0.23	0.22	0.24	91	937383	301	38	253	10	316
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.35	0.35	0.35	151	977475	287	44	231	12	283
CRW_01344	-	0.34	0.33	0.34	122	791557	238	42	190	6	244
CRW_01456	-	0.29	0.30	0.29	253	4240458	631	87	530	14	598
PDB_00187	-	0.39	0.39	0.38	282	3746210	558	88	373	97	434
PDB_00401	-	0.47	0.43	0.50	413	3996557	440	40	368	32	540
PDB_00409	-	0.32	0.37	0.27	90	688221	309	74	166	69	155
PDB_00609	-	0.38	0.39	0.38	309	4156470	571	100	407	64	481
PDB_00644	-	0.35	0.35	0.34	286	4328318	597	102	447	48	534
PDB_00675	-	0.42	0.39	0.45	381	4167987	491	39	421	31	593
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00704	-	0.52	0.48	0.56	465	4249241	401	49	315	37	508
PDB_00805	-	0.64	0.61	0.68	184	467756	111	11	77	23	118
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_00947	-	0.45	0.47	0.44	355	4310703	565	83	375	107	394
PDB_00993	-	0.39	0.39	0.39	313	3923400	544	81	407	56	489
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01089	-	0.41	0.41	0.40	310	4053360	546	89	369	88	449
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01140	-	0.51	0.49	0.53	457	4176627	454	58	353	43	473
PDB_01261	-	0.50	0.45	0.55	152	467750	130	4	122	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]