CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	IPknot		Contrafold
MCC	0.501	>	0.468
Average MCC ± 95% Confidence Intervals	0.490 ± 0.019	>	0.464 ± 0.018
Sensitivity	0.431	<	0.448
Positive Predictive Value	0.583	>	0.488
Total TP	49447	<	51471
Total TN	433618308	>	433597783
Total FP	51641	<	76876
Total FP CONTRA	6179	<	8576
Total FP INCONS	29230	<	45334
Total FP COMP	16232	<	22966
Total FN	65377	>	63353
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of IPknot and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for IPknot and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for IPknot and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for IPknot and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for IPknot and Contrafold).

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Performance of IPknot - scored higher in this pairwise comparison

1. Total counts & total scores for IPknot

Total Base Pair Counts
Total TP	49447
Total TN	433618308
Total FP	51641
Total FP CONTRA	6179
Total FP INCONS	29230
Total FP COMP	16232
Total FN	65377

Total Scores
MCC	0.501
Average MCC ± 95% Confidence Intervals	0.490 ± 0.019
Sensitivity	0.431
Positive Predictive Value	0.583
Nr of predictions	272

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2. Individual counts for IPknot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.58	0.51	0.66	107	3173779	466	10	44	412	102
CRW_00002	-	0.64	0.53	0.77	139	408879	64	18	24	22	125
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.83	0.77	0.89	352	1085204	78	4	41	33	106
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.78	0.76	0.79	360	1141862	121	19	75	27	114
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.72	0.63	0.83	297	1170856	75	6	56	13	173
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.58	0.50	0.66	229	1107469	137	16	102	19	227
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.71	0.61	0.83	287	1172399	74	4	56	14	186
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.72	287	1181556	121	23	87	11	189
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	236	1108950	134	23	96	15	221
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.50	0.60	231	1178495	170	17	137	16	234
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.76	0.68	0.83	317	1135898	79	6	57	16	146
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.70	0.64	0.77	307	1201626	111	11	81	19	169
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.58	0.50	0.68	231	1152582	123	17	91	15	235
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.54	0.48	0.62	225	1180051	148	20	120	8	246
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	249	1190838	118	6	103	9	219
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.37	0.34	0.40	150	1082284	231	30	192	9	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.59	0.53	0.65	252	1178495	145	17	116	12	221
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.67	261	1207844	146	17	113	16	214
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.73	0.63	0.85	302	1198569	73	7	48	18	176
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.74	239	1106005	96	13	71	12	214
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.76	0.72	0.81	347	1218713	108	15	66	27	137
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.63	250	1198526	164	23	127	14	228
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.56	0.44	0.71	207	1192448	104	18	67	19	261
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.55	0.79	250	1111971	79	11	54	14	205
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.56	0.47	0.66	216	1122424	126	25	86	15	246
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.47	0.58	208	1085244	163	20	129	14	238
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.76	0.69	0.83	314	1114894	79	11	52	16	143
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.53	0.43	0.66	194	1110503	106	22	76	8	259
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.60	0.48	0.74	218	1129962	95	5	71	19	232
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.76	270	1180060	100	16	70	14	194
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.67	0.58	0.77	265	1117916	90	11	68	11	188
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	276	1144958	123	17	90	16	188
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.42	0.31	0.56	136	1015781	124	17	91	16	296
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.55	0.42	0.71	193	1131487	92	13	67	12	263
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.79	0.71	0.88	327	1117890	60	13	30	17	131
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	268	1189284	121	17	84	20	208
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.35	0.48	160	1123920	187	28	142	17	301
CRW_00294	-	0.41	0.38	0.43	224	2620389	387	73	219	95	362
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.29	111	1620514	296	48	227	21	383
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.47	0.39	0.57	205	1762142	202	32	124	46	314
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.24	0.34	109	1445531	252	37	173	42	353
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.36	0.32	0.40	166	1805533	303	42	209	52	355
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.53	0.43	0.66	216	1627783	139	27	84	28	286
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.39	160	1988600	320	42	213	65	357
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.24	0.22	0.26	106	1769618	328	73	224	31	371
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.34	0.30	0.39	154	1892086	305	42	203	60	360
CRW_00338	-	0.21	0.20	0.23	79	1053084	273	64	199	10	316
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.45	0.42	0.49	211	1586436	264	42	182	40	287
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.40	178	1584646	289	54	212	23	323
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.38	0.31	0.46	158	1615159	219	33	153	33	345
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.43	174	1674963	268	35	193	40	333
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.37	0.32	0.42	153	1579390	248	42	168	38	329
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.40	159	1640366	275	46	195	34	347
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.49	0.41	0.59	203	1611565	179	27	115	37	293
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.45	0.41	0.50	202	1625901	232	30	173	29	296
CRW_00374	-	0.34	0.31	0.38	171	2182558	359	34	242	83	379
CRW_00375	-	0.36	0.31	0.41	166	2299037	265	34	203	28	375
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.40	0.59	214	2126590	218	30	119	69	320
CRW_00381	-	0.42	0.34	0.51	191	2303353	262	31	156	75	366
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.27	0.32	141	1750812	337	58	245	34	374
CRW_00400	-	0.30	0.26	0.35	126	2678096	393	35	198	160	368
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.35	0.33	0.38	153	1606124	308	45	206	57	311
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.40	0.34	0.46	170	1615137	238	31	165	42	326
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.41	0.33	0.51	163	1665906	188	30	126	32	332
CRW_00417	-	0.43	0.36	0.52	95	458219	97	18	71	8	167
CRW_00418	-	0.34	0.23	0.50	60	441209	66	5	56	5	200
CRW_00419	-	0.38	0.28	0.52	73	464026	72	7	60	5	192
CRW_00421	-	0.53	0.39	0.72	103	463060	53	4	36	13	163
CRW_00422	-	0.48	0.37	0.64	96	455385	74	8	46	20	167
CRW_00424	-	0.42	0.32	0.55	117	789184	104	10	85	9	246
CRW_00426	-	0.34	0.28	0.41	75	457262	117	15	94	8	190
CRW_00427	-	0.29	0.25	0.35	64	454397	126	20	100	6	197
CRW_00428	-	0.48	0.37	0.64	95	465946	65	11	43	11	165
CRW_00430	-	0.38	0.27	0.55	71	456361	67	8	50	9	195
CRW_00433	-	0.35	0.24	0.53	63	467908	59	3	54	2	200
CRW_00434	-	0.41	0.29	0.57	77	457310	60	10	49	1	186
CRW_00435	-	0.35	0.26	0.48	68	451584	77	6	67	4	197
CRW_00437	-	0.32	0.24	0.42	62	456344	92	9	75	8	198
CRW_00438	-	0.44	0.34	0.56	92	454416	83	8	65	10	176
CRW_00441	-	0.30	0.20	0.44	52	454463	69	13	53	3	210
CRW_00442	-	0.40	0.31	0.52	81	453471	81	13	63	5	180
CRW_00443	-	0.33	0.23	0.46	61	456358	81	9	62	10	199
CRW_00444	-	0.43	0.30	0.60	80	459228	59	5	48	6	183
CRW_00445	-	0.36	0.28	0.46	74	458242	92	11	76	5	191
CRW_00446	-	0.40	0.34	0.47	90	468803	112	14	89	9	175
CRW_00447	-	0.36	0.28	0.47	73	452521	91	10	72	9	187
CRW_00448	-	0.44	0.30	0.67	77	457331	46	7	31	8	184
CRW_00449	-	0.34	0.23	0.49	61	444971	65	6	58	1	199
CRW_00450	-	0.33	0.24	0.45	62	458265	89	11	65	13	200
CRW_00451	-	0.39	0.31	0.49	81	457279	94	10	76	8	183
CRW_00452	-	0.39	0.29	0.54	75	453490	77	8	55	14	187
CRW_00453	-	0.37	0.27	0.51	70	452540	75	7	59	9	191
CRW_00454	-	0.23	0.20	0.27	85	1730411	329	40	194	95	350
CRW_00456	-	0.44	0.31	0.61	83	470798	60	10	44	6	182
CRW_00457	-	0.51	0.42	0.61	111	467846	86	13	58	15	153
CRW_00458	-	0.53	0.42	0.67	112	464963	60	6	49	5	152
CRW_00459	-	0.58	0.44	0.76	115	462090	50	5	31	14	148
CRW_00460	-	0.34	0.28	0.41	155	1972717	247	25	194	28	389
CRW_00462	-	0.41	0.29	0.58	76	458271	66	6	50	10	185
CRW_00463	-	0.43	0.36	0.51	92	445860	95	22	66	7	162
CRW_00464	-	0.49	0.30	0.81	78	462145	24	1	17	6	186
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.81	0.75	0.88	344	1116375	69	10	36	23	114
CRW_00468	-	0.58	0.55	0.61	473	4290213	332	53	246	33	382
CRW_00471	-	0.55	0.49	0.62	424	4211566	286	33	230	23	447
CRW_00474	-	0.67	0.60	0.75	501	3976939	206	33	137	36	335
CRW_00476	-	0.62	0.53	0.73	462	4278640	202	29	144	29	417
CRW_00478	-	0.71	0.63	0.79	545	4150830	179	27	119	33	318
CRW_00487	-	0.62	0.52	0.73	457	4223242	193	34	138	21	415
CRW_00488	-	0.54	0.46	0.63	410	4325564	254	30	207	17	476
CRW_00490	-	0.50	0.42	0.58	366	4145132	283	39	223	21	496
CRW_00495	-	0.60	0.51	0.71	438	4205831	206	30	151	25	420
CRW_00496	-	0.59	0.49	0.70	427	4194243	213	24	162	27	439
CRW_00497	-	0.57	0.51	0.63	421	4402357	287	40	210	37	401
CRW_00499	-	0.57	0.49	0.67	431	4372762	238	23	187	28	452
CRW_00500	-	0.64	0.57	0.71	499	4205744	235	37	170	28	369
CRW_00501	-	0.62	0.53	0.73	460	4284494	200	27	147	26	408
CRW_00502	-	0.74	0.65	0.85	563	4296180	133	27	76	30	309
CRW_00503	-	0.43	0.38	0.49	327	4252323	348	37	299	12	540
CRW_00507	-	0.61	0.51	0.73	438	4174001	191	27	139	25	427
CRW_00509	-	0.56	0.49	0.64	429	4182608	266	40	201	25	438
CRW_00511	-	0.47	0.41	0.53	350	4107756	326	31	274	21	506
CRW_00512	-	0.62	0.56	0.70	458	3815046	219	42	157	20	361
CRW_00516	-	0.68	0.58	0.81	504	4272805	142	18	99	25	372
CRW_00518	-	0.39	0.32	0.47	283	4358027	331	46	272	13	601
CRW_00519	-	0.72	0.67	0.76	561	4246417	223	27	150	46	271
CRW_00520	-	0.55	0.49	0.61	417	4208666	302	41	227	34	433
CRW_00521	-	0.47	0.36	0.62	300	4136639	203	18	169	16	544
CRW_00522	-	0.32	0.26	0.39	201	3643140	326	51	258	17	581
CRW_00530	-	0.34	0.26	0.45	71	534937	94	30	57	7	197
CRW_00532	-	0.24	0.17	0.33	46	579285	103	22	73	8	219
CRW_00533	-	0.50	0.42	0.59	91	453474	81	19	44	18	128
CRW_00534	-	0.46	0.38	0.55	184	1832320	170	29	122	19	299
CRW_00535	-	0.33	0.29	0.37	96	898207	180	41	126	13	232
CRW_00538	-	0.34	0.25	0.46	76	812010	109	15	74	20	224
CRW_00542	-	0.20	0.18	0.23	56	994513	218	44	142	32	261
CRW_00545	-	0.31	0.28	0.35	55	1343821	197	26	78	93	138
CRW_00547	-	0.67	0.57	0.78	490	4278650	168	26	109	33	373
CRW_00579	-	0.58	0.53	0.63	500	4290189	312	44	252	16	437
CRW_00583	-	0.58	0.53	0.63	500	4290189	312	44	252	16	437
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.44	0.37	0.53	164	1094152	163	21	123	19	281
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.53	0.48	0.59	217	1119386	165	27	126	12	235
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.77	282	1098536	110	15	70	25	164
CRW_00594	-	0.35	0.29	0.41	115	1028615	180	23	142	15	280
CRW_00596	-	0.32	0.28	0.35	110	1024285	218	26	175	17	276
CRW_00597	-	0.26	0.25	0.28	101	1200110	295	30	234	31	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.43	168	1665830	265	48	179	38	323
CRW_00599	-	0.46	0.41	0.52	226	3754734	569	28	182	359	320
CRW_00604	-	0.89	0.86	0.91	70	411701	129	5	2	122	11
CRW_00606	-	0.89	0.85	0.94	78	559070	188	0	5	183	14
CRW_00607	-	0.76	0.73	0.80	56	536060	259	10	4	245	21
CRW_00615	-	0.86	0.77	0.95	63	553812	211	0	3	208	19
CRW_00616	-	0.55	0.51	0.60	56	1699152	355	11	27	317	54
CRW_00617	-	0.48	0.45	0.52	29	426370	178	4	23	151	35
CRW_00678	-	0.59	0.58	0.60	70	666319	212	9	37	166	51
CRW_00680	-	0.68	0.69	0.67	84	516510	190	13	29	148	38
CRW_00683	-	0.65	0.62	0.69	84	460198	151	11	27	113	51
CRW_00684	-	0.58	0.53	0.63	72	612057	178	14	28	136	63
CRW_00702	-	0.86	0.83	0.89	62	357365	141	7	1	133	13
CRW_00704	-	0.91	0.90	0.92	85	386668	146	4	3	139	9
CRW_00705	-	0.33	0.31	0.36	27	1461119	282	19	30	233	59
CRW_00706	-	0.64	0.69	0.59	41	695540	219	11	18	190	18
CRW_00708	-	0.64	0.62	0.66	41	3457073	499	16	5	478	25
CRW_00709	-	0.27	0.20	0.35	17	1728822	327	2	29	296	68
CRW_00710	-	0.77	0.67	0.89	76	1040318	214	1	8	205	38
CRW_00711	-	0.22	0.21	0.23	26	2318666	488	38	51	399	98
CRW_00712	-	0.78	0.76	0.80	82	952787	274	3	18	253	26
CRW_00713	-	0.84	0.76	0.93	77	731362	240	1	5	234	24
CRW_00723	-	0.68	0.46	1.00	34	1583276	308	0	0	308	40
CRW_00724	-	0.56	0.53	0.60	93	3231999	520	25	36	459	83
CRW_00725	-	0.60	0.59	0.61	102	1957065	284	37	27	220	72
CRW_00726	-	0.79	0.79	0.79	147	3378514	474	20	19	435	40
CRW_00730	-	0.46	0.45	0.46	73	338918	141	20	65	56	88
CRW_00732	-	0.23	0.25	0.22	29	3402003	471	41	63	367	88
CRW_00734	-	0.62	0.48	0.80	53	537100	84	2	11	71	57
CRW_00735	-	0.54	0.49	0.60	59	677931	126	11	29	86	62
CRW_00740	-	0.02	0.03	0.02	3	489422	159	62	68	29	110
CRW_00742	-	0.77	0.73	0.82	122	1723148	310	5	21	284	46
CRW_00743	-	0.58	0.62	0.54	92	2224824	435	56	23	356	57
CRW_00744	-	0.75	0.66	0.86	122	3433368	529	5	15	509	64
CRW_00745	-	0.73	0.72	0.73	111	1343828	207	15	26	166	43
CRW_00746	-	0.64	0.59	0.70	129	550542	110	18	36	56	90
CRW_00747	-	0.27	0.24	0.30	46	3722204	441	30	76	335	142
CRW_00749	-	0.40	0.40	0.40	72	3058919	488	31	79	378	107
CRW_00750	-	0.58	0.57	0.60	91	709684	186	19	42	125	69
CRW_00751	-	0.80	0.74	0.86	132	489402	79	12	9	58	46
CRW_00752	-	0.51	0.48	0.53	88	2975415	477	27	50	400	96
CRW_00753	-	0.17	0.15	0.20	27	489421	156	27	80	49	151
CRW_00757	-	0.14	0.13	0.14	17	415291	164	36	72	56	109
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.40	0.34	0.46	166	1640408	227	30	162	35	317
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.28	0.24	0.33	116	1636796	279	54	179	46	365
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.36	0.32	0.41	156	1638575	268	48	176	44	330
CRW_00761	-	0.25	0.23	0.27	110	2864020	525	63	228	234	364
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.48	0.34	0.67	153	1215790	109	10	67	32	293
CRW_00765	-	0.46	0.37	0.57	96	452509	76	13	58	5	161
CRW_00766	-	0.32	0.24	0.44	57	440262	83	10	62	11	183
CRW_00768	-	0.59	0.47	0.73	122	471740	54	6	38	10	137
CRW_00769	-	0.56	0.46	0.66	117	451549	68	12	47	9	135
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.44	0.34	0.57	136	945760	126	16	88	22	268
CRW_00773	-	0.42	0.37	0.48	95	451526	109	19	85	5	164
CRW_00774	-	0.50	0.35	0.72	93	488436	52	4	33	15	170
CRW_00777	-	0.40	0.34	0.47	102	719185	131	23	90	18	202
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.29	0.60	111	1201840	104	12	62	30	273
CRW_00779	-	0.45	0.39	0.51	164	1031447	169	24	131	14	258
CRW_00780	-	0.29	0.21	0.39	54	475662	88	18	66	4	201
CRW_00781	-	0.30	0.26	0.33	119	1978696	336	39	201	96	331
CRW_00783	-	0.32	0.22	0.45	58	453499	79	9	62	8	201
CRW_00784	-	0.34	0.27	0.43	70	456326	105	18	76	11	192
CRW_00785	-	0.46	0.34	0.61	86	452536	58	8	46	4	167
CRW_00786	-	0.41	0.36	0.46	160	1947006	291	23	162	106	290
CRW_00787	-	0.39	0.32	0.49	97	646753	108	19	84	5	209
CRW_00788	-	0.46	0.32	0.67	114	1758579	242	6	51	185	247
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.55	0.46	0.66	206	1137473	121	11	96	14	241
CRW_00790	-	0.31	0.28	0.34	123	1803693	328	29	205	94	324
CRW_00792	-	0.45	0.34	0.59	132	1581309	202	11	79	112	251
CRW_00793	-	0.64	0.52	0.79	195	1048829	114	14	38	62	182
CRW_00794	-	0.37	0.28	0.49	68	434640	81	10	60	11	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.36	0.26	0.50	102	1152715	143	20	84	39	292
CRW_00796	-	0.28	0.19	0.43	44	384901	70	6	52	12	191
CRW_00797	-	0.37	0.28	0.49	97	693054	121	12	90	19	245
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.62	0.51	0.75	240	1401657	117	12	66	39	230
CRW_00801	-	0.44	0.39	0.49	96	438322	108	21	77	10	153
CRW_00802	-	0.41	0.32	0.52	82	460161	86	14	63	9	171
CRW_00803	-	0.26	0.24	0.29	108	1952904	320	47	217	56	341
CRW_00804	-	0.46	0.33	0.63	134	1420241	141	12	68	61	269
CRW_00806	-	0.27	0.24	0.31	107	1913596	285	34	209	42	342
CRW_00807	-	0.57	0.42	0.77	168	1391727	109	4	47	58	230
CRW_00808	-	0.29	0.21	0.39	75	1301498	175	36	82	57	281
CRW_00813	-	0.47	0.44	0.49	59	530845	179	12	49	118	74
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.68	0.63	0.73	295	1117857	132	9	99	24	175
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.68	0.62	0.75	289	1135893	113	17	79	17	175
CRW_01134	-	0.39	0.28	0.55	119	965137	105	17	82	6	308
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.37	0.35	0.40	174	1606096	291	43	215	33	329
CRW_01168	-	0.51	0.42	0.62	174	900872	124	17	90	17	237
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.41	0.50	207	1593595	240	34	169	37	299
CRW_01186	-	0.43	0.34	0.55	133	836328	116	15	95	6	253
CRW_01188	-	0.23	0.20	0.27	77	837582	210	31	175	4	316
CRW_01189	-	0.25	0.23	0.28	90	862315	245	36	200	9	302
CRW_01214	-	0.44	0.30	0.64	123	932102	77	10	60	7	282
CRW_01222	-	0.34	0.27	0.44	108	913029	140	28	111	1	289
CRW_01224	-	0.37	0.28	0.49	111	913048	125	14	103	8	286
CRW_01239	-	0.26	0.20	0.35	76	840237	144	22	121	1	306
CRW_01250	-	0.39	0.33	0.47	123	781612	152	20	120	12	255
CRW_01260	-	0.21	0.15	0.29	60	913066	164	21	129	14	333
CRW_01266	-	0.42	0.36	0.50	136	818290	147	12	122	13	245
CRW_01271	-	0.48	0.40	0.56	153	827269	128	20	99	9	228
CRW_01275	-	0.39	0.33	0.47	142	1082355	170	34	125	11	290
CRW_01283	-	0.37	0.31	0.45	126	963684	171	17	139	15	283
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.41	0.39	0.44	201	1693264	280	54	201	25	314
CRW_01314	-	0.32	0.27	0.39	109	937487	176	23	146	7	298
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.50	0.42	0.59	182	977595	134	16	108	10	252
CRW_01344	-	0.38	0.30	0.47	110	791679	131	20	102	9	256
CRW_01456	-	0.40	0.36	0.43	309	4240610	420	57	352	11	542
PDB_00187	-	0.47	0.40	0.55	288	3746425	308	50	190	68	428
PDB_00401	-	0.59	0.52	0.66	497	3996625	290	30	226	34	456
PDB_00409	-	0.33	0.37	0.30	91	688246	288	61	153	74	154
PDB_00609	-	0.46	0.41	0.52	322	4156665	345	57	242	46	468
PDB_00644	-	0.44	0.40	0.49	327	4328485	381	66	275	40	493
PDB_00675	-	0.58	0.51	0.66	493	4168079	291	29	227	35	481
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.64	0.57	0.72	282	1073454	132	13	96	23	213
PDB_00704	-	0.59	0.52	0.66	508	4249305	293	32	225	36	465
PDB_00805	-	0.68	0.57	0.81	172	467816	53	6	34	13	130
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.67	0.62	0.73	331	1500326	158	17	104	37	204
PDB_00947	-	0.69	0.65	0.73	486	4310850	323	34	146	143	263
PDB_00993	-	0.44	0.39	0.51	310	3923591	337	53	247	37	492
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.55	0.46	0.66	252	1471087	150	21	110	19	295
PDB_01089	-	0.60	0.55	0.66	419	4053491	317	61	157	99	340
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.67	319	1606055	171	20	134	17	243
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.69	0.63	0.76	342	1433519	132	10	100	22	198
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.56	0.48	0.66	252	1204748	138	22	106	10	275
PDB_01140	-	0.65	0.57	0.74	530	4176777	245	24	164	57	400
PDB_01261	-	0.68	0.55	0.84	185	467809	34	0	34	0	151
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.61	0.56	0.67	276	1117847	163	10	127	26	215

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	51471
Total TN	433597783
Total FP	76876
Total FP CONTRA	8576
Total FP INCONS	45334
Total FP COMP	22966
Total FN	63353

Total Scores
MCC	0.468
Average MCC ± 95% Confidence Intervals	0.464 ± 0.018
Sensitivity	0.448
Positive Predictive Value	0.488
Nr of predictions	272

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.62	0.55	0.69	115	3173773	576	9	43	524	94
CRW_00002	-	0.72	0.62	0.82	164	408861	79	5	30	44	100
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.77	0.78	351	1085153	140	12	85	43	107
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.68	320	1141844	188	22	130	36	154
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.64	268	1170795	174	25	127	22	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	237	1107395	202	25	159	18	219
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.60	0.67	286	1172318	164	20	122	22	187
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	274	1181504	188	29	146	13	202
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.53	231	1108865	226	32	177	17	226
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.57	245	1178450	213	19	166	28	220
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.56	0.52	0.61	243	1135878	175	14	143	18	220
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	287	1201577	192	19	142	31	189
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.59	237	1152519	185	22	143	20	229
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	233	1180006	196	22	155	19	238
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.62	0.59	0.64	277	1190763	182	19	137	26	191
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.35	150	1082228	288	32	246	10	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	228	1178444	227	20	188	19	245
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.57	0.55	0.59	259	1207798	197	27	151	19	216
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	250	1198476	220	27	173	20	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.51	0.55	229	1105912	212	23	164	25	224
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.66	301	1218683	200	21	136	43	183
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.61	267	1198490	184	24	145	15	211
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	206	1192327	232	26	181	25	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.69	286	1111874	157	20	106	31	169
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	221	1122337	215	30	163	22	241
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	203	1085190	233	20	188	25	243
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.63	271	1114843	186	19	138	29	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.40	0.49	182	1110423	203	23	167	13	271
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.47	190	1129849	240	28	189	23	260
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.64	262	1180004	173	25	125	23	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.60	232	1117873	173	15	140	18	221
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	288	1144901	182	17	135	30	176
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.41	0.38	0.45	162	1015668	217	29	166	22	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	216	1131371	196	24	149	23	240
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.68	289	1117836	159	19	116	24	169
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.63	270	1189221	197	21	141	35	206
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	165	1123842	258	35	208	15	296
CRW_00294	-	0.40	0.39	0.40	230	2620330	464	67	278	119	356
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	122	1620403	431	72	303	56	372
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.43	0.40	0.45	210	1762038	324	41	214	69	309
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.29	129	1445402	388	63	256	69	333
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.37	184	1805456	377	53	257	67	337
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.50	0.49	0.51	246	1627630	284	52	182	50	256
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.33	166	1988512	422	56	281	85	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	122	1769544	429	70	285	74	355
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.41	183	1892040	342	42	220	80	331
CRW_00338	-	0.20	0.21	0.19	84	1052972	396	77	293	26	311
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.39	197	1586366	355	58	250	47	301
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1584577	358	54	257	47	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.36	170	1615029	355	51	253	51	333
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.38	202	1674827	390	57	279	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	157	1579284	361	57	255	49	325
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.37	189	1640256	363	64	257	42	317
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.41	0.46	205	1611467	295	42	196	57	291
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.41	0.40	0.42	198	1625830	342	48	230	64	300
CRW_00374	-	0.40	0.39	0.41	217	2182480	418	42	266	110	333
CRW_00375	-	0.37	0.36	0.38	197	2298928	401	55	260	86	344
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.43	0.42	0.44	223	2126443	372	38	249	85	311
CRW_00381	-	0.40	0.38	0.41	214	2303211	410	37	269	104	343
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.28	0.30	0.27	152	1750697	447	70	337	40	363
CRW_00400	-	0.27	0.27	0.28	134	2677974	538	57	290	191	360
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.28	131	1606062	404	68	267	69	333
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.36	0.42	181	1615070	306	41	211	54	315
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.36	181	1665721	382	54	269	59	314
CRW_00417	-	0.41	0.38	0.44	99	458178	135	23	103	9	163
CRW_00418	-	0.26	0.22	0.31	56	441150	130	14	110	6	204
CRW_00419	-	0.40	0.35	0.45	93	463958	122	7	108	7	172
CRW_00421	-	0.50	0.44	0.57	117	462998	111	10	78	23	149
CRW_00422	-	0.44	0.40	0.49	105	455320	131	13	97	21	158
CRW_00424	-	0.49	0.45	0.52	164	789083	172	18	131	23	199
CRW_00426	-	0.42	0.39	0.45	103	457219	137	13	111	13	162
CRW_00427	-	0.28	0.26	0.29	69	454346	182	30	136	16	192
CRW_00428	-	0.37	0.33	0.40	87	465879	144	17	112	15	173
CRW_00430	-	0.39	0.32	0.48	85	456313	101	17	75	9	181
CRW_00433	-	0.33	0.28	0.40	73	467844	115	12	99	4	190
CRW_00434	-	0.48	0.40	0.56	106	457257	91	9	74	8	157
CRW_00435	-	0.30	0.26	0.34	68	451527	139	21	109	9	197
CRW_00437	-	0.25	0.22	0.29	57	456294	151	16	123	12	203
CRW_00438	-	0.39	0.34	0.44	92	454372	126	15	102	9	176
CRW_00441	-	0.37	0.31	0.44	80	454400	110	12	89	9	182
CRW_00442	-	0.32	0.28	0.37	74	453426	139	14	114	11	187
CRW_00443	-	0.34	0.26	0.43	68	456333	107	8	81	18	192
CRW_00444	-	0.45	0.38	0.53	100	459174	99	15	72	12	163
CRW_00445	-	0.43	0.40	0.47	105	458179	127	19	100	8	160
CRW_00446	-	0.33	0.31	0.36	81	468771	157	18	126	13	184
CRW_00447	-	0.29	0.27	0.30	71	452442	174	23	140	11	189
CRW_00448	-	0.29	0.26	0.34	67	457247	143	23	109	11	194
CRW_00449	-	0.42	0.37	0.48	95	444897	111	20	84	7	165
CRW_00450	-	0.43	0.36	0.53	94	458224	101	11	74	16	168
CRW_00451	-	0.43	0.38	0.49	99	457244	114	11	92	11	165
CRW_00452	-	0.49	0.41	0.59	108	453445	94	7	68	19	154
CRW_00453	-	0.38	0.32	0.44	84	452487	117	13	92	12	177
CRW_00454	-	0.24	0.24	0.24	105	1730300	445	60	265	120	330
CRW_00456	-	0.45	0.37	0.56	98	470760	83	10	67	6	167
CRW_00457	-	0.44	0.41	0.48	107	467803	134	17	101	16	157
CRW_00458	-	0.48	0.42	0.54	111	464926	106	9	84	13	153
CRW_00459	-	0.52	0.46	0.58	121	462032	112	10	78	24	142
CRW_00460	-	0.39	0.35	0.43	193	1972641	344	20	237	87	351
CRW_00462	-	0.46	0.40	0.53	104	458208	107	10	81	16	157
CRW_00463	-	0.44	0.40	0.49	101	445832	116	18	89	9	153
CRW_00464	-	0.46	0.38	0.55	101	462056	95	8	76	11	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.70	0.68	0.73	312	1116336	148	19	98	31	146
CRW_00468	-	0.55	0.54	0.56	465	4290161	413	52	307	54	390
CRW_00471	-	0.55	0.53	0.57	461	4211438	388	52	302	34	410
CRW_00474	-	0.62	0.60	0.64	505	3976820	335	60	225	50	331
CRW_00476	-	0.63	0.60	0.67	525	4278490	308	43	217	48	354
CRW_00478	-	0.69	0.66	0.73	572	4150736	259	41	172	46	291
CRW_00487	-	0.59	0.56	0.62	491	4223083	351	43	254	54	381
CRW_00488	-	0.53	0.50	0.55	445	4325406	401	42	318	41	441
CRW_00490	-	0.40	0.40	0.41	344	4144922	525	63	431	31	518
CRW_00495	-	0.54	0.52	0.56	446	4205659	395	51	294	50	412
CRW_00496	-	0.57	0.54	0.60	464	4194083	357	35	274	48	402
CRW_00497	-	0.55	0.54	0.55	444	4402224	425	46	314	65	378
CRW_00499	-	0.57	0.55	0.59	484	4372585	380	44	290	46	399
CRW_00500	-	0.54	0.53	0.55	463	4205614	421	56	317	48	405
CRW_00501	-	0.58	0.56	0.60	485	4284323	369	51	269	49	383
CRW_00502	-	0.67	0.65	0.69	567	4296026	311	42	211	58	305
CRW_00503	-	0.45	0.44	0.46	383	4252162	479	61	380	38	484
CRW_00507	-	0.59	0.56	0.62	483	4173826	342	38	258	46	382
CRW_00509	-	0.55	0.53	0.58	459	4182488	368	44	287	37	408
CRW_00511	-	0.47	0.45	0.49	381	4107641	432	39	350	43	475
CRW_00512	-	0.59	0.56	0.61	460	3814952	334	52	239	43	359
CRW_00516	-	0.62	0.59	0.66	516	4272643	324	42	225	57	360
CRW_00518	-	0.47	0.45	0.50	394	4357835	427	61	338	28	490
CRW_00519	-	0.72	0.71	0.72	594	4246334	314	40	187	87	238
CRW_00520	-	0.63	0.59	0.66	505	4208590	309	55	201	53	345
CRW_00521	-	0.45	0.43	0.48	360	4136374	420	58	334	28	484
CRW_00522	-	0.32	0.30	0.33	238	3642926	513	86	400	27	544
CRW_00530	-	0.35	0.34	0.37	91	534848	170	47	109	14	177
CRW_00532	-	0.26	0.25	0.26	66	579174	202	50	136	16	199
CRW_00533	-	0.42	0.42	0.42	92	453409	172	30	97	45	127
CRW_00534	-	0.47	0.45	0.49	219	1832209	275	43	184	48	264
CRW_00535	-	0.37	0.37	0.38	121	898149	221	45	155	21	207
CRW_00538	-	0.41	0.38	0.45	113	811923	164	23	116	25	187
CRW_00542	-	0.28	0.30	0.27	95	994401	299	70	189	40	222
CRW_00545	-	0.40	0.40	0.40	77	1343788	300	25	90	185	116
CRW_00547	-	0.59	0.57	0.61	492	4278470	368	53	260	55	371
CRW_00579	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00583	-	0.60	0.57	0.62	533	4290130	349	53	269	27	404
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.33	0.30	0.36	134	1094090	257	24	212	21	311
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	157	1119345	281	41	213	27	295
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.65	268	1098489	182	28	118	36	178
CRW_00594	-	0.23	0.24	0.22	96	1028467	363	49	283	31	299
CRW_00596	-	0.24	0.25	0.24	95	1024193	335	44	264	27	291
CRW_00597	-	0.27	0.28	0.27	115	1200049	353	41	270	42	296
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	193	1665739	354	59	234	61	298
CRW_00599	-	0.40	0.40	0.41	216	3754638	682	45	271	366	330
CRW_00604	-	0.84	0.85	0.82	69	411694	186	4	11	171	12
CRW_00606	-	0.93	0.90	0.97	83	559067	236	0	3	233	9
CRW_00607	-	0.81	0.82	0.81	63	536052	269	3	12	254	14
CRW_00615	-	0.86	0.85	0.88	70	553798	271	0	10	261	12
CRW_00616	-	0.60	0.58	0.62	64	1699142	445	5	35	405	46
CRW_00617	-	0.57	0.55	0.60	35	426368	211	6	17	188	29
CRW_00678	-	0.42	0.44	0.40	53	666302	315	14	66	235	68
CRW_00680	-	0.53	0.55	0.52	67	516506	229	17	46	166	55
CRW_00683	-	0.63	0.63	0.63	85	460186	216	2	47	167	50
CRW_00684	-	0.53	0.55	0.51	74	612025	266	16	56	194	61
CRW_00702	-	0.72	0.73	0.71	55	357357	187	7	16	164	20
CRW_00704	-	0.87	0.87	0.87	82	386666	195	4	8	183	12
CRW_00705	-	0.26	0.29	0.23	25	1461086	417	29	55	333	61
CRW_00706	-	0.64	0.71	0.58	42	695537	308	13	18	277	17
CRW_00708	-	0.51	0.56	0.46	37	3457054	690	17	27	646	29
CRW_00709	-	0.23	0.19	0.29	16	1728814	485	1	39	445	69
CRW_00710	-	0.69	0.64	0.74	73	1040304	312	2	24	286	41
CRW_00711	-	0.23	0.24	0.21	30	2318638	605	50	63	492	94
CRW_00712	-	0.44	0.48	0.39	52	952758	374	24	56	294	56
CRW_00713	-	0.80	0.77	0.84	78	731352	295	5	10	280	23
CRW_00723	-	0.60	0.58	0.62	43	1583241	438	9	17	412	31
CRW_00724	-	0.85	0.84	0.86	148	3231981	567	9	15	543	28
CRW_00725	-	0.55	0.59	0.52	102	1957033	455	34	62	359	72
CRW_00726	-	0.90	0.90	0.91	168	3378515	590	4	13	573	19
CRW_00730	-	0.48	0.49	0.48	79	338910	157	15	72	70	82
CRW_00732	-	0.35	0.40	0.30	47	3401978	655	37	74	544	70
CRW_00734	-	0.45	0.43	0.47	47	537065	184	20	34	130	63
CRW_00735	-	0.52	0.57	0.47	69	677883	231	42	36	153	52
CRW_00740	-	0.14	0.17	0.12	19	489398	229	53	85	91	94
CRW_00742	-	0.83	0.83	0.84	139	1723131	386	5	21	360	29
CRW_00743	-	0.55	0.66	0.46	98	2224782	543	58	57	428	51
CRW_00744	-	0.72	0.70	0.73	131	3433331	678	12	36	630	55
CRW_00745	-	0.66	0.69	0.63	107	1343810	322	19	44	259	47
CRW_00746	-	0.53	0.53	0.55	115	550514	165	22	74	69	104
CRW_00747	-	0.22	0.23	0.22	43	3722161	688	37	115	536	145
CRW_00749	-	0.42	0.45	0.40	81	3058898	650	25	97	528	98
CRW_00750	-	0.60	0.61	0.59	98	709671	249	18	49	182	62
CRW_00751	-	0.78	0.76	0.80	136	489385	143	3	31	109	42
CRW_00752	-	0.63	0.58	0.68	106	2975425	572	16	33	523	78
CRW_00753	-	0.25	0.26	0.24	46	489360	233	42	107	84	132
CRW_00757	-	0.21	0.25	0.18	31	415246	217	58	81	78	95
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	170	1640283	375	51	262	62	313
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	145	1636697	372	51	252	69	336
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.37	0.36	0.37	176	1638485	358	65	229	64	310
CRW_00761	-	0.24	0.24	0.24	113	2863958	623	51	299	273	361
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.44	144	1215694	231	27	155	49	302
CRW_00765	-	0.43	0.39	0.47	101	452459	126	21	95	10	156
CRW_00766	-	0.27	0.23	0.31	56	440213	138	20	102	16	184
CRW_00768	-	0.61	0.55	0.68	143	471695	100	7	61	32	116
CRW_00769	-	0.48	0.43	0.53	108	451522	115	21	74	20	144
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	148	945666	215	18	168	29	256
CRW_00773	-	0.48	0.45	0.51	116	451497	135	19	93	23	143
CRW_00774	-	0.44	0.40	0.49	105	488352	131	8	101	22	158
CRW_00777	-	0.43	0.42	0.45	127	719119	199	27	127	45	177
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	174	1201730	163	16	105	42	210
CRW_00779	-	0.37	0.36	0.39	150	1031380	264	22	214	28	272
CRW_00780	-	0.32	0.29	0.35	74	475591	151	18	117	16	181
CRW_00781	-	0.26	0.25	0.26	112	1978630	474	35	278	161	338
CRW_00783	-	0.39	0.33	0.45	86	453437	121	12	93	16	173
CRW_00784	-	0.41	0.37	0.45	96	456279	134	19	96	19	166
CRW_00785	-	0.54	0.48	0.62	122	452478	89	12	64	13	131
CRW_00786	-	0.38	0.37	0.38	167	1946914	424	48	222	154	283
CRW_00787	-	0.49	0.45	0.53	138	646691	151	13	111	27	168
CRW_00788	-	0.36	0.33	0.40	119	1758455	393	31	145	217	242
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.48	0.44	0.53	196	1137416	209	14	160	35	251
CRW_00790	-	0.26	0.26	0.27	115	1803619	442	38	278	126	332
CRW_00792	-	0.36	0.34	0.38	130	1581187	378	24	190	164	253
CRW_00793	-	0.54	0.50	0.59	189	1048753	210	26	108	76	188
CRW_00794	-	0.37	0.35	0.39	85	434558	154	20	115	19	161
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.38	131	1152575	263	22	193	48	263
CRW_00796	-	0.36	0.29	0.45	69	384851	109	2	81	26	166
CRW_00797	-	0.33	0.30	0.38	101	692984	189	25	143	21	241
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.60	253	1401550	230	21	151	58	217
CRW_00801	-	0.47	0.45	0.49	113	438286	131	27	90	14	136
CRW_00802	-	0.42	0.39	0.45	99	460102	145	19	100	26	154
CRW_00803	-	0.27	0.27	0.26	123	1952808	452	64	281	107	326
CRW_00804	-	0.41	0.37	0.45	148	1420127	285	21	159	105	255
CRW_00806	-	0.28	0.28	0.29	125	1913511	410	53	257	100	324
CRW_00807	-	0.52	0.47	0.56	188	1391613	233	14	131	88	210
CRW_00808	-	0.31	0.29	0.33	103	1301378	324	43	167	114	253
CRW_00813	-	0.44	0.47	0.41	63	530812	220	29	61	130	70
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	265	1117797	226	19	179	28	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	280	1135838	187	19	141	27	184
CRW_01134	-	0.38	0.35	0.41	148	964992	225	35	180	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	194	1606043	347	52	239	56	309
CRW_01168	-	0.50	0.48	0.53	196	900783	197	25	149	23	215
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.44	0.47	221	1593534	302	49	201	52	285
CRW_01186	-	0.40	0.38	0.42	146	836224	219	23	178	18	240
CRW_01188	-	0.20	0.20	0.20	77	837476	320	47	265	8	316
CRW_01189	-	0.23	0.23	0.23	92	862249	314	44	256	14	300
CRW_01214	-	0.30	0.28	0.32	114	931943	252	28	210	14	291
CRW_01222	-	0.30	0.28	0.33	113	912930	241	48	185	8	284
CRW_01224	-	0.40	0.36	0.45	141	912960	188	17	158	13	256
CRW_01239	-	0.24	0.23	0.25	88	840107	271	42	219	10	294
CRW_01250	-	0.45	0.41	0.49	155	781556	186	19	145	22	223
CRW_01260	-	0.23	0.20	0.25	80	912961	256	30	205	21	313
CRW_01266	-	0.35	0.35	0.34	134	818168	277	41	217	19	247
CRW_01271	-	0.32	0.32	0.32	121	827157	280	31	232	17	260
CRW_01275	-	0.38	0.37	0.40	160	1082251	264	41	204	19	272
CRW_01283	-	0.33	0.30	0.36	123	963626	238	25	192	21	286
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.38	0.37	0.38	193	1693217	355	53	257	45	322
CRW_01314	-	0.30	0.28	0.33	114	937422	242	30	199	13	293
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.44	0.48	189	977509	217	30	173	14	245
CRW_01344	-	0.28	0.27	0.30	98	791579	243	31	203	9	268
CRW_01456	-	0.33	0.33	0.34	282	4240489	586	69	488	29	569
PDB_00187	-	0.39	0.40	0.39	283	3746236	520	91	343	86	433
PDB_00401	-	0.51	0.47	0.55	446	3996572	408	28	332	48	507
PDB_00409	-	0.35	0.40	0.30	99	688225	317	68	159	90	146
PDB_00609	-	0.37	0.38	0.37	297	4156478	570	86	425	59	493
PDB_00644	-	0.38	0.38	0.38	309	4328331	575	84	429	62	511
PDB_00675	-	0.51	0.47	0.56	453	4168012	414	25	338	51	521
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073403	229	19	177	33	249
PDB_00704	-	0.53	0.48	0.58	468	4249258	397	31	313	53	505
PDB_00805	-	0.66	0.64	0.68	193	467745	126	7	83	36	109
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	264	1500266	296	25	223	48	271
PDB_00947	-	0.67	0.67	0.68	503	4310772	422	63	178	181	246
PDB_00993	-	0.37	0.37	0.37	297	3923402	548	84	418	46	505
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	236	1470988	271	34	212	25	311
PDB_01089	-	0.58	0.58	0.59	438	4053385	428	79	226	123	321
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.56	301	1605989	279	31	207	41	261
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	303	1433467	242	16	185	41	237
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.44	0.55	232	1204703	216	20	173	23	295
PDB_01140	-	0.65	0.62	0.69	573	4176662	336	53	207	76	357
PDB_01261	-	0.79	0.69	0.90	233	467769	32	2	24	6	103
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.51	232	1117807	258	16	205	37	259

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of IPknot - scored higher in this pairwise comparison

1. Total counts & total scores for IPknot

2. Individual counts for IPknot [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]