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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of MXScarna(20) - scored higher in this pairwise comparison

  4. Performance of Carnac(seed) - scored lower in this pairwise comparison

  5. Compile and download dataset for MXScarna(20) & Carnac(seed) [.zip] - may take several seconds...


Overview

Metric MXScarna(20) Carnac(seed)
MCC 0.836 > 0.729
Average MCC ± 95% Confidence Intervals 0.836 ± > 0.729 ±
Sensitivity 0.806 > 0.570
Positive Predictive Value 0.868 < 0.932
Total TP 369 > 261
Total TN 1085176 < 1085321
Total FP 107 > 35
Total FP CONTRA 10 > 6
Total FP INCONS 46 > 13
Total FP COMP 51 > 16
Total FN 89 < 197
P-value 0.0

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Performance plots


  1. Comparison of performance of MXScarna(20) and Carnac(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and Carnac(seed)).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and Carnac(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and Carnac(seed)).

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Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP 369
Total TN 1085176
Total FP 107
Total FP CONTRA 10
Total FP INCONS 46
Total FP COMP 51
Total FN 89
Total Scores
MCC 0.836
Average MCC ± 95% Confidence Intervals 0.836 ±
Sensitivity 0.806
Positive Predictive Value 0.868
Nr of predictions 1

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2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_00024

SSU_rRNA_archaea links to Rfam database...

0.84 0.81 0.87 369 1085176 107 10 46 51 89

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Performance of Carnac(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(seed)

Total Base Pair Counts
Total TP 261
Total TN 1085321
Total FP 35
Total FP CONTRA 6
Total FP INCONS 13
Total FP COMP 16
Total FN 197
Total Scores
MCC 0.729
Average MCC ± 95% Confidence Intervals 0.729 ±
Sensitivity 0.570
Positive Predictive Value 0.932
Nr of predictions 1

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2. Individual counts for Carnac(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_00024

SSU_rRNA_archaea links to Rfam database...

0.73 0.57 0.93 261 1085321 35 6 13 16 197

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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