CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MaxExpect		CRWrnafold
MCC	0.376	>	0.356
Average MCC ± 95% Confidence Intervals	0.392 ± 0.026	>	0.345 ± 0.027
Sensitivity	0.360	>	0.359
Positive Predictive Value	0.394	>	0.353
Total TP	14912	>	14887
Total TN	97458918	>	97454636
Total FP	29116	<	33452
Total FP CONTRA	3588	<	4870
Total FP INCONS	19391	<	22416
Total FP COMP	6137	<	6166
Total FN	26499	<	26524
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MaxExpect and CRWrnafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MaxExpect and CRWrnafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MaxExpect and CRWrnafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MaxExpect and CRWrnafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MaxExpect and CRWrnafold).

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Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	14912
Total TN	97458918
Total FP	29116
Total FP CONTRA	3588
Total FP INCONS	19391
Total FP COMP	6137
Total FN	26499

Total Scores
MCC	0.376
Average MCC ± 95% Confidence Intervals	0.392 ± 0.026
Sensitivity	0.360
Positive Predictive Value	0.394
Nr of predictions	138

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2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.63	0.57	0.70	151	408844	107	5	60	42	113
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	192	1107377	261	23	224	14	264
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	197	1108869	251	32	207	12	260
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	193	1135835	265	20	230	15	270
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.26	0.26	0.27	115	1082230	324	28	283	13	330
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1105895	262	25	222	15	267
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.55	244	1111842	223	23	177	23	211
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	146	1122327	292	34	244	14	316
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.42	0.40	0.45	180	1085197	237	27	197	13	266
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1114831	186	26	141	19	184
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	148	1110390	267	37	220	10	305
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.39	0.36	0.42	160	1129876	240	22	198	20	290
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1117836	279	37	230	12	296
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	270	1144891	201	25	155	21	194
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	146	1015622	282	41	216	25	286
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.38	0.35	0.41	159	1131368	249	21	212	16	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	246	1117835	199	26	153	20	212
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	150	1123843	269	39	218	12	311
CRW_00338	-	0.17	0.19	0.16	74	1052974	390	83	295	12	321
CRW_00417	-	0.36	0.34	0.39	88	458179	146	24	112	10	174
CRW_00418	-	0.18	0.16	0.20	42	441120	176	15	153	8	218
CRW_00419	-	0.20	0.17	0.22	46	463957	168	14	149	5	219
CRW_00421	-	0.48	0.45	0.52	119	462976	126	15	93	18	147
CRW_00422	-	0.40	0.39	0.42	102	455291	162	21	121	20	161
CRW_00424	-	0.42	0.39	0.44	142	789075	201	18	161	22	221
CRW_00426	-	0.32	0.31	0.34	83	457199	173	24	140	9	182
CRW_00427	-	0.26	0.24	0.28	62	454361	174	27	131	16	199
CRW_00428	-	0.37	0.35	0.39	91	465860	158	24	120	14	169
CRW_00430	-	0.37	0.30	0.46	79	456317	101	12	82	7	187
CRW_00433	-	0.29	0.24	0.35	64	467846	124	10	108	6	199
CRW_00434	-	0.46	0.42	0.51	111	457227	117	19	89	9	152
CRW_00435	-	0.41	0.37	0.46	97	451515	119	8	105	6	168
CRW_00437	-	0.33	0.27	0.40	70	456316	108	16	88	4	190
CRW_00438	-	0.45	0.41	0.49	111	454354	125	17	99	9	157
CRW_00441	-	0.26	0.21	0.31	56	454399	130	14	112	4	206
CRW_00442	-	0.38	0.35	0.41	92	453401	144	32	103	9	169
CRW_00443	-	0.29	0.25	0.34	65	456299	140	18	108	14	195
CRW_00444	-	0.30	0.29	0.33	75	459131	162	23	132	7	188
CRW_00445	-	0.32	0.29	0.34	78	458175	161	28	122	11	187
CRW_00446	-	0.30	0.28	0.32	74	468762	173	19	141	13	191
CRW_00447	-	0.35	0.33	0.38	86	452448	159	15	127	17	174
CRW_00448	-	0.36	0.31	0.40	82	457243	134	16	105	13	179
CRW_00449	-	0.38	0.35	0.40	91	444871	140	22	112	6	169
CRW_00450	-	0.36	0.31	0.43	80	458217	118	6	100	12	182
CRW_00451	-	0.26	0.25	0.28	65	457212	182	22	147	13	199
CRW_00452	-	0.29	0.26	0.32	67	453421	158	17	123	18	195
CRW_00453	-	0.32	0.30	0.35	78	452450	155	25	123	7	183
CRW_00456	-	0.37	0.32	0.44	84	470743	119	21	87	11	181
CRW_00457	-	0.42	0.39	0.46	103	467805	134	17	103	14	161
CRW_00458	-	0.49	0.46	0.52	122	464894	129	22	92	15	142
CRW_00459	-	0.37	0.34	0.40	90	462015	154	22	114	18	173
CRW_00462	-	0.39	0.33	0.46	86	458215	114	9	93	12	175
CRW_00463	-	0.36	0.35	0.38	88	445809	151	25	118	8	166
CRW_00464	-	0.27	0.24	0.32	63	462041	145	14	123	8	201
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	188	25	142	21	185
CRW_00530	-	0.33	0.34	0.32	90	534810	205	54	141	10	178
CRW_00532	-	0.18	0.18	0.17	49	579145	242	61	171	10	216
CRW_00533	-	0.39	0.38	0.41	83	453424	169	20	101	48	136
CRW_00535	-	0.31	0.31	0.30	102	898131	252	53	184	15	226
CRW_00538	-	0.34	0.30	0.38	91	811934	171	43	107	21	209
CRW_00542	-	0.20	0.21	0.19	65	994419	320	59	212	49	252
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.34	136	1094057	285	28	239	18	309
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.43	169	1119363	246	23	201	22	283
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	194	1098463	264	36	210	18	252
CRW_00594	-	0.26	0.27	0.25	107	1028468	350	47	273	30	288
CRW_00596	-	0.22	0.23	0.22	87	1024209	323	42	258	23	299
CRW_00604	-	0.90	0.88	0.93	71	411702	185	1	4	180	10
CRW_00606	-	0.87	0.84	0.90	77	559067	237	0	9	228	15
CRW_00607	-	0.66	0.65	0.67	50	536055	254	9	16	229	27
CRW_00615	-	0.70	0.72	0.68	59	553791	259	11	17	231	23
CRW_00617	-	0.48	0.48	0.48	31	426362	233	10	23	200	33
CRW_00678	-	0.45	0.45	0.44	55	666309	273	12	59	202	66
CRW_00680	-	0.60	0.61	0.60	74	516512	219	10	40	169	48
CRW_00683	-	0.30	0.33	0.27	44	460156	239	29	91	119	91
CRW_00684	-	0.45	0.45	0.46	61	612037	256	19	54	183	74
CRW_00702	-	0.70	0.76	0.64	57	357346	172	24	8	140	18
CRW_00704	-	0.87	0.86	0.87	81	386667	187	2	10	175	13
CRW_00706	-	0.55	0.59	0.51	35	695541	326	15	19	292	24
CRW_00710	-	0.63	0.66	0.60	75	1040278	345	22	28	295	39
CRW_00712	-	0.70	0.70	0.69	76	952780	350	4	30	316	32
CRW_00713	-	0.81	0.74	0.88	75	731360	279	2	8	269	26
CRW_00730	-	0.56	0.58	0.53	94	338898	165	19	65	81	67
CRW_00734	-	0.20	0.25	0.16	28	536995	212	74	69	69	82
CRW_00735	-	0.36	0.42	0.30	51	677861	247	51	67	129	70
CRW_00740	-	0.04	0.05	0.04	6	489396	256	54	99	103	107
CRW_00746	-	0.49	0.50	0.48	109	550498	191	23	95	73	110
CRW_00750	-	0.53	0.57	0.49	91	709652	244	24	69	151	69
CRW_00751	-	0.84	0.83	0.86	148	489382	135	3	22	110	30
CRW_00753	-	0.22	0.21	0.22	38	489385	207	31	101	75	140
CRW_00757	-	0.14	0.15	0.13	19	415264	235	35	98	102	107
CRW_00765	-	0.40	0.37	0.43	95	452456	133	23	102	8	162
CRW_00766	-	0.35	0.30	0.40	72	440211	123	11	97	15	168
CRW_00768	-	0.43	0.40	0.46	103	471680	146	13	110	23	156
CRW_00769	-	0.56	0.54	0.59	135	451495	113	22	73	18	117
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.23	85	945632	297	29	254	14	319
CRW_00773	-	0.52	0.48	0.55	125	451499	119	17	84	18	134
CRW_00774	-	0.35	0.32	0.38	84	488343	157	18	121	18	179
CRW_00777	-	0.38	0.38	0.39	116	719100	221	34	150	37	188
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	112	1201643	316	45	225	46	272
CRW_00779	-	0.27	0.26	0.29	108	1031396	274	32	230	12	314
CRW_00780	-	0.27	0.24	0.30	61	475598	155	14	127	14	194
CRW_00783	-	0.29	0.26	0.32	68	453413	156	11	136	9	191
CRW_00784	-	0.27	0.25	0.30	65	456271	172	27	127	18	197
CRW_00785	-	0.26	0.23	0.30	58	452481	145	20	117	8	195
CRW_00787	-	0.44	0.40	0.47	123	646693	160	13	124	23	183
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.38	165	1137350	293	39	232	22	282
CRW_00793	-	0.47	0.44	0.49	166	1048740	227	34	136	57	211
CRW_00794	-	0.29	0.28	0.31	68	434558	174	10	142	22	178
CRW_00796	-	0.29	0.27	0.32	64	384801	159	15	123	21	171
CRW_00797	-	0.39	0.38	0.41	130	692935	213	23	165	25	212
CRW_00801	-	0.39	0.36	0.42	90	438301	137	25	100	12	159
CRW_00802	-	0.20	0.18	0.22	45	460113	173	20	142	11	208
CRW_00813	-	0.28	0.31	0.26	41	530808	255	40	76	139	92
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	271	1117802	215	14	173	28	199
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1135837	260	32	212	16	267
CRW_01134	-	0.37	0.35	0.40	148	964986	231	28	193	10	279
CRW_01168	-	0.39	0.38	0.39	156	900758	258	36	203	19	255
CRW_01186	-	0.29	0.28	0.30	108	836211	262	31	221	10	278
CRW_01188	-	0.17	0.17	0.17	67	837468	337	52	278	7	326
CRW_01189	-	0.21	0.20	0.22	80	862278	296	42	241	13	312
CRW_01214	-	0.26	0.24	0.28	96	931948	260	36	215	9	309
CRW_01222	-	0.24	0.24	0.24	96	912884	300	60	236	4	301
CRW_01224	-	0.36	0.34	0.37	134	912918	235	31	193	11	263
CRW_01239	-	0.26	0.26	0.27	98	840090	286	37	231	18	284
CRW_01250	-	0.34	0.31	0.38	118	781561	210	24	172	14	260
CRW_01260	-	0.16	0.15	0.17	60	912929	292	42	245	5	333
CRW_01266	-	0.26	0.27	0.26	101	818174	296	45	240	11	280
CRW_01271	-	0.36	0.36	0.36	137	827165	249	36	203	10	244
CRW_01275	-	0.39	0.38	0.40	164	1082246	265	39	207	19	268
CRW_01283	-	0.26	0.24	0.28	99	963611	268	33	223	12	310
CRW_01314	-	0.30	0.29	0.32	116	937404	259	31	214	14	291
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.35	0.38	154	977498	261	31	218	12	280
CRW_01344	-	0.31	0.29	0.33	106	791590	228	33	182	13	260
PDB_00409	-	0.32	0.37	0.27	91	688216	320	75	169	76	154
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.62	259	1073427	187	20	139	28	236
PDB_00805	-	0.62	0.59	0.65	178	467755	124	14	81	29	124
PDB_01261	-	0.74	0.65	0.85	218	467773	41	0	37	4	118
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.46	211	1117804	273	31	214	28	280

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Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

Total Base Pair Counts
Total TP	14887
Total TN	97454636
Total FP	33452
Total FP CONTRA	4870
Total FP INCONS	22416
Total FP COMP	6166
Total FN	26524

Total Scores
MCC	0.356
Average MCC ± 95% Confidence Intervals	0.345 ± 0.027
Sensitivity	0.359
Positive Predictive Value	0.353
Nr of predictions	138

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2. Individual counts for CRWrnafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00002	-	0.32	0.31	0.33	82	408808	203	23	147	33	182
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1107367	210	22	170	18	199
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	259	1108856	209	20	170	19	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	226	1135811	256	30	211	15	237
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	168	1082220	282	31	237	14	277
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	240	1105883	225	26	179	20	213
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	225	1111832	246	27	202	17	230
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.69	0.67	0.71	311	1122312	152	21	107	24	151
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.41	181	1085155	279	39	226	14	265
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.65	0.65	0.66	296	1114820	177	28	127	22	161
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	196	1110351	263	35	213	15	257
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	182	1129824	270	20	230	20	268
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.67	0.66	0.68	299	1117818	160	18	125	17	154
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.61	274	1144893	197	27	147	23	190
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.37	164	1015587	296	41	233	22	268
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	228	1131314	245	27	191	27	228
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.69	305	1117819	160	25	111	24	153
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.34	151	1123806	312	48	245	19	310
CRW_00338	-	0.11	0.12	0.10	47	1052969	417	74	336	7	348
CRW_00417	-	0.47	0.46	0.49	121	458154	138	19	109	10	141
CRW_00418	-	0.11	0.11	0.12	28	441094	219	29	179	11	232
CRW_00419	-	0.11	0.11	0.11	28	463922	224	26	190	8	237
CRW_00421	-	0.44	0.44	0.45	116	462946	156	22	119	15	150
CRW_00422	-	0.26	0.25	0.27	66	455293	196	40	136	20	197
CRW_00424	-	0.30	0.31	0.30	113	789017	287	29	237	21	250
CRW_00426	-	0.22	0.22	0.22	58	457187	213	31	170	12	207
CRW_00427	-	0.30	0.30	0.30	78	454321	200	36	146	18	183
CRW_00428	-	0.22	0.22	0.22	56	465839	213	30	170	13	204
CRW_00430	-	0.28	0.27	0.29	73	456241	183	22	154	7	193
CRW_00433	-	0.24	0.24	0.26	62	467785	187	23	158	6	201
CRW_00434	-	0.28	0.27	0.30	71	457208	176	24	143	9	192
CRW_00435	-	0.34	0.33	0.35	87	451479	166	32	127	7	178
CRW_00437	-	0.37	0.37	0.38	95	456241	166	25	129	12	165
CRW_00438	-	0.37	0.35	0.39	94	454341	154	16	130	8	174
CRW_00441	-	0.34	0.32	0.35	85	454341	166	23	132	11	177
CRW_00442	-	0.36	0.36	0.35	95	453360	184	38	135	11	166
CRW_00443	-	0.31	0.30	0.32	79	456243	194	27	141	26	181
CRW_00444	-	0.30	0.30	0.31	78	459108	186	25	150	11	185
CRW_00445	-	0.28	0.27	0.28	72	458149	187	34	148	5	193
CRW_00446	-	0.25	0.25	0.26	66	468741	200	28	161	11	199
CRW_00447	-	0.28	0.28	0.28	72	452417	197	30	157	10	188
CRW_00448	-	0.21	0.21	0.21	55	457190	217	34	167	16	206
CRW_00449	-	0.21	0.20	0.22	51	444861	190	28	156	6	209
CRW_00450	-	0.28	0.27	0.29	72	458156	192	23	152	17	190
CRW_00451	-	0.22	0.22	0.23	57	457196	202	24	169	9	207
CRW_00452	-	0.32	0.31	0.33	81	453380	179	30	137	12	181
CRW_00453	-	0.14	0.13	0.15	35	452439	210	30	172	8	226
CRW_00456	-	0.15	0.14	0.15	38	470689	214	27	181	6	227
CRW_00457	-	0.25	0.24	0.27	63	467791	186	25	149	12	201
CRW_00458	-	0.43	0.43	0.44	113	464872	153	31	114	8	151
CRW_00459	-	0.35	0.34	0.36	89	461993	180	16	143	21	174
CRW_00462	-	0.24	0.23	0.25	61	458160	190	33	149	8	200
CRW_00463	-	0.52	0.50	0.54	126	445807	130	25	82	23	128
CRW_00464	-	0.30	0.29	0.31	77	461995	176	26	143	7	187
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.70	0.71	320	1116316	158	22	107	29	138
CRW_00530	-	0.23	0.25	0.21	67	534774	263	62	192	9	201
CRW_00532	-	0.15	0.17	0.13	45	579084	312	78	219	15	220
CRW_00533	-	0.21	0.23	0.19	51	453362	253	56	159	38	168
CRW_00535	-	0.33	0.35	0.30	116	898086	295	80	188	27	212
CRW_00538	-	0.23	0.25	0.21	76	811810	307	80	209	18	224
CRW_00542	-	0.12	0.14	0.11	45	994333	407	100	277	30	272
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	153	1094035	290	40	232	18	292
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.64	268	1119334	184	21	133	30	184
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.56	0.56	249	1098461	218	30	163	25	197
CRW_00594	-	0.21	0.23	0.20	89	1028443	369	80	283	6	306
CRW_00596	-	0.23	0.24	0.21	92	1024167	349	55	282	12	294
CRW_00604	-	0.60	0.64	0.55	52	411684	224	14	28	182	29
CRW_00606	-	0.66	0.68	0.64	63	559055	272	9	26	237	29
CRW_00607	-	0.53	0.55	0.52	42	536049	294	8	31	255	35
CRW_00615	-	0.31	0.35	0.26	29	553768	313	24	57	232	53
CRW_00617	-	0.14	0.17	0.12	11	426336	250	28	51	171	53
CRW_00678	-	0.39	0.41	0.36	50	666297	318	15	73	230	71
CRW_00680	-	0.35	0.40	0.30	49	516475	256	34	78	144	73
CRW_00683	-	0.21	0.23	0.19	31	460161	267	33	95	139	104
CRW_00684	-	0.29	0.32	0.27	43	612013	300	32	83	185	92
CRW_00702	-	0.24	0.35	0.16	26	357274	237	91	44	102	49
CRW_00704	-	0.82	0.81	0.83	76	386668	201	0	16	185	18
CRW_00706	-	0.48	0.54	0.43	32	695536	339	10	32	297	27
CRW_00710	-	0.57	0.57	0.57	65	1040288	387	11	39	337	49
CRW_00712	-	0.27	0.33	0.22	36	952727	403	48	79	276	72
CRW_00713	-	0.58	0.58	0.58	59	731343	329	4	39	286	42
CRW_00730	-	0.69	0.72	0.66	116	338899	157	19	42	96	45
CRW_00734	-	0.27	0.35	0.21	39	536976	251	84	67	100	71
CRW_00735	-	0.28	0.37	0.22	45	677822	307	96	67	144	76
CRW_00740	-	0.00	0.00	0.00	0	489347	303	67	141	95	113
CRW_00746	-	0.41	0.46	0.36	101	550444	227	56	124	47	118
CRW_00750	-	0.30	0.33	0.27	53	709640	311	41	102	168	107
CRW_00751	-	0.32	0.38	0.27	68	489303	240	69	115	56	110
CRW_00753	-	0.23	0.25	0.21	45	489342	260	53	115	92	133
CRW_00757	-	0.10	0.12	0.08	15	415233	266	50	118	98	111
CRW_00765	-	0.41	0.41	0.40	106	452413	176	25	132	19	151
CRW_00766	-	0.18	0.18	0.18	43	440153	206	27	168	11	197
CRW_00768	-	0.38	0.37	0.38	96	471656	179	22	132	25	163
CRW_00769	-	0.43	0.42	0.44	106	451484	154	27	108	19	146
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.19	0.18	0.19	74	945610	325	42	274	9	330
CRW_00773	-	0.47	0.46	0.48	120	451476	149	24	105	20	139
CRW_00774	-	0.18	0.18	0.18	47	488302	225	39	178	8	216
CRW_00777	-	0.25	0.27	0.24	82	719059	279	63	196	20	222
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	159	1201646	291	25	195	71	225
CRW_00779	-	0.28	0.28	0.27	120	1031326	338	33	287	18	302
CRW_00780	-	0.13	0.13	0.13	34	475544	230	36	186	8	221
CRW_00783	-	0.20	0.20	0.20	51	453371	220	26	180	14	208
CRW_00784	-	0.26	0.26	0.27	67	456240	199	26	157	16	195
CRW_00785	-	0.30	0.29	0.30	74	452430	189	23	149	17	179
CRW_00787	-	0.28	0.29	0.28	88	646633	259	39	193	27	218
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	224	1137356	236	32	174	30	223
CRW_00793	-	0.31	0.32	0.31	120	1048689	320	49	218	53	257
CRW_00794	-	0.25	0.25	0.25	62	434530	200	22	164	14	184
CRW_00796	-	0.13	0.13	0.14	30	384783	202	26	164	12	205
CRW_00797	-	0.25	0.26	0.24	89	692885	299	49	230	20	253
CRW_00801	-	0.43	0.44	0.43	109	438263	163	37	107	19	140
CRW_00802	-	0.30	0.30	0.31	75	460078	195	26	141	28	178
CRW_00813	-	0.18	0.23	0.14	31	530751	279	68	115	96	102
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.47	222	1117790	269	18	230	21	248
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.69	0.69	0.69	318	1135820	167	27	113	27	146
CRW_01134	-	0.29	0.29	0.29	123	964928	311	41	263	7	304
CRW_01168	-	0.41	0.41	0.41	168	900747	251	32	206	13	243
CRW_01186	-	0.27	0.27	0.27	105	836184	289	42	240	7	281
CRW_01188	-	0.12	0.12	0.11	48	837445	375	55	317	3	345
CRW_01189	-	0.24	0.24	0.23	95	862232	324	57	257	10	297
CRW_01214	-	0.21	0.21	0.22	85	931905	318	31	274	13	320
CRW_01222	-	0.26	0.25	0.26	101	912892	291	46	237	8	296
CRW_01224	-	0.24	0.24	0.24	94	912883	306	34	265	7	303
CRW_01239	-	0.21	0.21	0.21	81	840064	325	54	257	14	301
CRW_01250	-	0.30	0.30	0.30	114	781500	271	38	223	10	264
CRW_01260	-	0.15	0.15	0.15	59	912890	348	33	294	21	334
CRW_01266	-	0.30	0.30	0.30	115	818176	283	35	234	14	266
CRW_01271	-	0.29	0.30	0.28	115	827136	300	53	237	10	266
CRW_01275	-	0.33	0.33	0.33	144	1082222	305	49	241	15	288
CRW_01283	-	0.39	0.39	0.39	161	963557	267	29	219	19	248
CRW_01314	-	0.28	0.27	0.28	110	937374	293	34	247	12	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977489	271	43	211	17	276
CRW_01344	-	0.23	0.23	0.23	83	791549	283	43	236	4	283
PDB_00409	-	0.27	0.31	0.23	77	688219	317	88	167	62	168
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.65	0.61	0.69	304	1073402	166	18	121	27	191
PDB_00805	-	0.59	0.58	0.60	176	467736	139	17	99	23	126
PDB_01261	-	0.48	0.45	0.50	152	467726	150	4	146	0	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	253	1117806	233	20	181	32	238

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]

Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

2. Individual counts for CRWrnafold [ download as .csv ]