CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MaxExpect		Fold
MCC	0.407	>	0.375
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017	>	0.371 ± 0.016
Sensitivity	0.396	>	0.381
Positive Predictive Value	0.418	>	0.369
Total TP	45809	>	44002
Total TN	437653518	>	437643777
Total FP	84964	<	97987
Total FP CONTRA	10114	<	12548
Total FP INCONS	53548	<	62662
Total FP COMP	21302	<	22777
Total FN	69828	<	71635
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MaxExpect and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MaxExpect and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MaxExpect and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MaxExpect and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MaxExpect and Fold).

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Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	45809
Total TN	437653518
Total FP	84964
Total FP CONTRA	10114
Total FP INCONS	53548
Total FP COMP	21302
Total FN	69828

Total Scores
MCC	0.407
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.418
Nr of predictions	273

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2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.59	0.56	0.61	117	3173749	620	6	68	546	92
CRW_00002	-	0.63	0.57	0.70	151	408844	107	5	60	42	113
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.71	0.70	0.71	320	1085152	169	17	112	40	138
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.66	310	1141844	191	28	134	29	164
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.48	0.57	226	1170816	189	20	153	16	244
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	192	1107377	261	23	224	14	264
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.54	232	1172316	212	16	182	14	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1181497	266	35	218	13	273
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	197	1108869	251	32	207	12	260
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.52	220	1178453	229	21	186	22	245
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	193	1135835	265	20	230	15	270
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	254	1201566	230	30	175	25	222
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.46	202	1152479	257	24	216	17	264
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	259	1179986	190	37	134	19	212
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.46	192	1190777	241	18	209	14	276
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.26	0.26	0.27	115	1082230	324	28	283	13	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	221	1178440	239	26	193	20	252
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1207782	238	32	188	18	242
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	263	1198489	199	15	159	25	215
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1105895	262	25	222	15	267
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.51	248	1218656	263	29	208	26	236
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	241	1198458	244	44	183	17	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.39	0.41	182	1192293	285	38	227	20	286
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.55	244	1111842	223	23	177	23	211
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	146	1122327	292	34	244	14	316
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.42	0.40	0.45	180	1085197	237	27	197	13	266
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1114831	186	26	141	19	184
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	148	1110390	267	37	220	10	305
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.39	0.36	0.42	160	1129876	240	22	198	20	290
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.56	244	1179977	213	26	169	18	220
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1117836	279	37	230	12	296
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	270	1144891	201	25	155	21	194
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	146	1015622	282	41	216	25	286
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.38	0.35	0.41	159	1131368	249	21	212	16	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	246	1117835	199	26	153	20	212
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	218	1189213	245	32	190	23	258
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	150	1123843	269	39	218	12	311
CRW_00294	-	0.35	0.37	0.33	217	2620253	526	104	331	91	369
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.24	123	1620380	438	79	318	41	371
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	180	1761991	393	60	272	61	339
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445370	462	62	332	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	157	1805427	422	63	303	56	364
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	205	1627618	330	55	232	43	297
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	172	1988480	429	65	298	66	345
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.18	0.17	87	1769512	473	87	335	51	390
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.35	166	1892006	380	65	248	67	348
CRW_00338	-	0.17	0.19	0.16	74	1052974	390	83	295	12	321
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	174	1586388	361	52	257	52	324
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	361	62	259	40	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.33	151	1615043	353	51	258	44	352
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	206	1674869	336	56	234	46	301
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	134	1579236	421	78	305	38	348
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1640256	403	77	282	44	355
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.40	0.39	0.42	192	1611452	316	45	221	50	304
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	139	1625798	414	78	291	45	359
CRW_00374	-	0.34	0.32	0.35	178	2182499	406	42	286	78	372
CRW_00375	-	0.31	0.31	0.31	166	2298906	437	63	305	69	375
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.44	0.43	234	2126414	384	57	248	79	300
CRW_00381	-	0.34	0.33	0.35	185	2303200	450	58	288	104	372
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750712	440	78	328	34	377
CRW_00400	-	0.29	0.29	0.29	144	2677952	564	62	297	205	350
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	144	1606062	415	58	264	93	320
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	163	1615021	361	68	251	42	333
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.30	153	1665712	421	60	300	61	342
CRW_00417	-	0.36	0.34	0.39	88	458179	146	24	112	10	174
CRW_00418	-	0.18	0.16	0.20	42	441120	176	15	153	8	218
CRW_00419	-	0.20	0.17	0.22	46	463957	168	14	149	5	219
CRW_00421	-	0.48	0.45	0.52	119	462976	126	15	93	18	147
CRW_00422	-	0.40	0.39	0.42	102	455291	162	21	121	20	161
CRW_00424	-	0.42	0.39	0.44	142	789075	201	18	161	22	221
CRW_00426	-	0.32	0.31	0.34	83	457199	173	24	140	9	182
CRW_00427	-	0.26	0.24	0.28	62	454361	174	27	131	16	199
CRW_00428	-	0.37	0.35	0.39	91	465860	158	24	120	14	169
CRW_00430	-	0.37	0.30	0.46	79	456317	101	12	82	7	187
CRW_00433	-	0.29	0.24	0.35	64	467846	124	10	108	6	199
CRW_00434	-	0.46	0.42	0.51	111	457227	117	19	89	9	152
CRW_00435	-	0.41	0.37	0.46	97	451515	119	8	105	6	168
CRW_00437	-	0.33	0.27	0.40	70	456316	108	16	88	4	190
CRW_00438	-	0.45	0.41	0.49	111	454354	125	17	99	9	157
CRW_00441	-	0.26	0.21	0.31	56	454399	130	14	112	4	206
CRW_00442	-	0.38	0.35	0.41	92	453401	144	32	103	9	169
CRW_00443	-	0.29	0.25	0.34	65	456299	140	18	108	14	195
CRW_00444	-	0.30	0.29	0.33	75	459131	162	23	132	7	188
CRW_00445	-	0.32	0.29	0.34	78	458175	161	28	122	11	187
CRW_00446	-	0.30	0.28	0.32	74	468762	173	19	141	13	191
CRW_00447	-	0.35	0.33	0.38	86	452448	159	15	127	17	174
CRW_00448	-	0.36	0.31	0.40	82	457243	134	16	105	13	179
CRW_00449	-	0.38	0.35	0.40	91	444871	140	22	112	6	169
CRW_00450	-	0.36	0.31	0.43	80	458217	118	6	100	12	182
CRW_00451	-	0.26	0.25	0.28	65	457212	182	22	147	13	199
CRW_00452	-	0.29	0.26	0.32	67	453421	158	17	123	18	195
CRW_00453	-	0.32	0.30	0.35	78	452450	155	25	123	7	183
CRW_00454	-	0.18	0.18	0.18	78	1730297	469	58	297	114	357
CRW_00456	-	0.37	0.32	0.44	84	470743	119	21	87	11	181
CRW_00457	-	0.42	0.39	0.46	103	467805	134	17	103	14	161
CRW_00458	-	0.49	0.46	0.52	122	464894	129	22	92	15	142
CRW_00459	-	0.37	0.34	0.40	90	462015	154	22	114	18	173
CRW_00460	-	0.33	0.33	0.33	180	1972551	449	47	313	89	364
CRW_00462	-	0.39	0.33	0.46	86	458215	114	9	93	12	175
CRW_00463	-	0.36	0.35	0.38	88	445809	151	25	118	8	166
CRW_00464	-	0.27	0.24	0.32	63	462041	145	14	123	8	201
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	188	25	142	21	185
CRW_00468	-	0.55	0.53	0.57	449	4290203	371	51	282	38	406
CRW_00471	-	0.43	0.42	0.44	364	4211430	482	62	397	23	507
CRW_00474	-	0.55	0.54	0.56	453	3976798	398	62	297	39	383
CRW_00476	-	0.45	0.43	0.46	382	4278441	484	69	383	32	497
CRW_00478	-	0.55	0.54	0.56	462	4150691	398	61	307	30	401
CRW_00487	-	0.54	0.52	0.56	454	4223053	398	58	306	34	418
CRW_00488	-	0.48	0.45	0.50	399	4325415	430	55	342	33	487
CRW_00490	-	0.36	0.36	0.36	312	4144896	585	82	470	33	550
CRW_00495	-	0.46	0.45	0.48	387	4205642	448	49	372	27	471
CRW_00496	-	0.48	0.46	0.50	399	4194050	444	43	364	37	467
CRW_00497	-	0.48	0.48	0.48	398	4402195	480	74	361	45	424
CRW_00499	-	0.56	0.54	0.59	477	4372592	365	45	289	31	406
CRW_00500	-	0.46	0.45	0.47	394	4205613	469	69	374	26	474
CRW_00501	-	0.44	0.43	0.45	369	4284303	483	66	390	27	499
CRW_00502	-	0.65	0.63	0.67	550	4296030	306	39	227	40	322
CRW_00503	-	0.45	0.43	0.46	374	4252172	465	61	379	25	493
CRW_00507	-	0.36	0.35	0.38	299	4173820	506	54	432	20	566
CRW_00509	-	0.49	0.46	0.51	397	4182506	409	43	332	34	470
CRW_00511	-	0.46	0.44	0.48	380	4107613	445	39	379	27	476
CRW_00512	-	0.58	0.55	0.61	449	3814963	314	52	239	23	370
CRW_00516	-	0.62	0.58	0.66	512	4272654	300	28	232	40	364
CRW_00518	-	0.36	0.34	0.38	298	4357837	515	67	426	22	586
CRW_00519	-	0.71	0.70	0.72	586	4246346	282	32	191	59	246
CRW_00520	-	0.53	0.52	0.54	438	4208541	405	63	309	33	412
CRW_00521	-	0.45	0.42	0.49	351	4136414	392	52	309	31	493
CRW_00522	-	0.28	0.27	0.29	213	3642919	543	80	438	25	569
CRW_00525	-	0.27	0.28	0.26	227	4058941	698	74	583	41	586
CRW_00530	-	0.33	0.34	0.32	90	534810	205	54	141	10	178
CRW_00532	-	0.18	0.18	0.17	49	579145	242	61	171	10	216
CRW_00533	-	0.39	0.38	0.41	83	453424	169	20	101	48	136
CRW_00534	-	0.40	0.40	0.41	191	1832193	313	53	218	42	292
CRW_00535	-	0.31	0.31	0.30	102	898131	252	53	184	15	226
CRW_00538	-	0.34	0.30	0.38	91	811934	171	43	107	21	209
CRW_00542	-	0.20	0.21	0.19	65	994419	320	59	212	49	252
CRW_00545	-	0.26	0.26	0.25	50	1343782	354	35	113	206	143
CRW_00547	-	0.50	0.48	0.52	416	4278470	423	41	348	34	447
CRW_00579	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00583	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.34	136	1094057	285	28	239	18	309
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.43	169	1119363	246	23	201	22	283
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	194	1098463	264	36	210	18	252
CRW_00594	-	0.26	0.27	0.25	107	1028468	350	47	273	30	288
CRW_00596	-	0.22	0.23	0.22	87	1024209	323	42	258	23	299
CRW_00597	-	0.25	0.26	0.25	105	1200059	356	39	272	45	306
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.38	0.39	0.38	190	1665724	360	63	248	49	301
CRW_00599	-	0.37	0.37	0.37	203	3754627	701	59	281	361	343
CRW_00604	-	0.90	0.88	0.93	71	411702	185	1	4	180	10
CRW_00606	-	0.87	0.84	0.90	77	559067	237	0	9	228	15
CRW_00607	-	0.66	0.65	0.67	50	536055	254	9	16	229	27
CRW_00615	-	0.70	0.72	0.68	59	553791	259	11	17	231	23
CRW_00616	-	0.73	0.67	0.80	74	1699153	375	2	17	356	36
CRW_00617	-	0.48	0.48	0.48	31	426362	233	10	23	200	33
CRW_00678	-	0.45	0.45	0.44	55	666309	273	12	59	202	66
CRW_00680	-	0.60	0.61	0.60	74	516512	219	10	40	169	48
CRW_00683	-	0.30	0.33	0.27	44	460156	239	29	91	119	91
CRW_00684	-	0.45	0.45	0.46	61	612037	256	19	54	183	74
CRW_00702	-	0.70	0.76	0.64	57	357346	172	24	8	140	18
CRW_00704	-	0.87	0.86	0.87	81	386667	187	2	10	175	13
CRW_00705	-	0.38	0.43	0.33	37	1461084	448	26	48	374	49
CRW_00706	-	0.55	0.59	0.51	35	695541	326	15	19	292	24
CRW_00708	-	0.59	0.64	0.55	42	3457059	696	16	18	662	24
CRW_00709	-	0.03	0.04	0.03	3	1728765	540	24	78	438	82
CRW_00710	-	0.63	0.66	0.60	75	1040278	345	22	28	295	39
CRW_00711	-	0.37	0.38	0.36	47	2318649	581	31	54	496	77
CRW_00712	-	0.70	0.70	0.69	76	952780	350	4	30	316	32
CRW_00713	-	0.81	0.74	0.88	75	731360	279	2	8	269	26
CRW_00723	-	0.57	0.51	0.62	38	1583249	453	4	19	430	36
CRW_00724	-	0.71	0.73	0.69	129	3231967	557	17	40	500	47
CRW_00725	-	0.46	0.51	0.41	89	1957015	447	47	80	320	85
CRW_00726	-	0.70	0.73	0.67	136	3378498	595	24	42	529	51
CRW_00730	-	0.56	0.58	0.53	94	338898	165	19	65	81	67
CRW_00732	-	0.41	0.50	0.33	59	3401958	678	66	53	559	58
CRW_00734	-	0.20	0.25	0.16	28	536995	212	74	69	69	82
CRW_00735	-	0.36	0.42	0.30	51	677861	247	51	67	129	70
CRW_00740	-	0.04	0.05	0.04	6	489396	256	54	99	103	107
CRW_00742	-	0.63	0.59	0.67	99	1723149	427	6	42	379	69
CRW_00743	-	0.49	0.56	0.42	83	2224799	533	67	46	420	66
CRW_00744	-	0.68	0.68	0.69	126	3433328	692	6	50	636	60
CRW_00745	-	0.51	0.59	0.44	91	1343774	378	41	74	263	63
CRW_00746	-	0.49	0.50	0.48	109	550498	191	23	95	73	110
CRW_00747	-	0.28	0.29	0.26	54	3722151	719	32	119	568	134
CRW_00749	-	0.39	0.42	0.36	75	3058893	640	34	99	507	104
CRW_00750	-	0.53	0.57	0.49	91	709652	244	24	69	151	69
CRW_00751	-	0.84	0.83	0.86	148	489382	135	3	22	110	30
CRW_00752	-	0.38	0.43	0.33	80	2975338	651	47	115	489	104
CRW_00753	-	0.22	0.21	0.22	38	489385	207	31	101	75	140
CRW_00757	-	0.14	0.15	0.13	19	415264	235	35	98	102	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.34	155	1640308	356	41	262	53	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636649	407	59	286	62	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	143	1638449	415	65	298	52	343
CRW_00761	-	0.21	0.22	0.20	102	2863911	677	78	330	269	372
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.19	0.21	86	1215616	348	38	280	30	360
CRW_00765	-	0.40	0.37	0.43	95	452456	133	23	102	8	162
CRW_00766	-	0.35	0.30	0.40	72	440211	123	11	97	15	168
CRW_00768	-	0.43	0.40	0.46	103	471680	146	13	110	23	156
CRW_00769	-	0.56	0.54	0.59	135	451495	113	22	73	18	117
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.23	85	945632	297	29	254	14	319
CRW_00773	-	0.52	0.48	0.55	125	451499	119	17	84	18	134
CRW_00774	-	0.35	0.32	0.38	84	488343	157	18	121	18	179
CRW_00777	-	0.38	0.38	0.39	116	719100	221	34	150	37	188
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	112	1201643	316	45	225	46	272
CRW_00779	-	0.27	0.26	0.29	108	1031396	274	32	230	12	314
CRW_00780	-	0.27	0.24	0.30	61	475598	155	14	127	14	194
CRW_00781	-	0.26	0.26	0.25	118	1978581	470	59	297	114	332
CRW_00783	-	0.29	0.26	0.32	68	453413	156	11	136	9	191
CRW_00784	-	0.27	0.25	0.30	65	456271	172	27	127	18	197
CRW_00785	-	0.26	0.23	0.30	58	452481	145	20	117	8	195
CRW_00786	-	0.37	0.36	0.39	164	1946926	412	27	234	151	286
CRW_00787	-	0.44	0.40	0.47	123	646693	160	13	124	23	183
CRW_00788	-	0.34	0.31	0.38	111	1758454	398	29	156	213	250
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.38	165	1137350	293	39	232	22	282
CRW_00790	-	0.22	0.22	0.22	97	1803609	455	45	299	111	350
CRW_00792	-	0.30	0.28	0.32	107	1581193	378	31	200	147	276
CRW_00793	-	0.47	0.44	0.49	166	1048740	227	34	136	57	211
CRW_00794	-	0.29	0.28	0.31	68	434558	174	10	142	22	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	138	1152523	307	34	226	47	256
CRW_00796	-	0.29	0.27	0.32	64	384801	159	15	123	21	171
CRW_00797	-	0.39	0.38	0.41	130	692935	213	23	165	25	212
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	239	1401570	232	20	146	66	231
CRW_00801	-	0.39	0.36	0.42	90	438301	137	25	100	12	159
CRW_00802	-	0.20	0.18	0.22	45	460113	173	20	142	11	208
CRW_00803	-	0.24	0.25	0.23	111	1952785	462	64	316	82	338
CRW_00804	-	0.33	0.33	0.34	131	1420069	350	33	222	95	272
CRW_00806	-	0.27	0.27	0.27	122	1913491	446	43	290	113	327
CRW_00807	-	0.43	0.40	0.46	161	1391596	295	24	165	106	237
CRW_00808	-	0.27	0.27	0.27	97	1301332	370	49	213	108	259
CRW_00813	-	0.28	0.31	0.26	41	530808	255	40	76	139	92
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	271	1117802	215	14	173	28	199
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1135837	260	32	212	16	267
CRW_01134	-	0.37	0.35	0.40	148	964986	231	28	193	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1606020	397	56	301	40	352
CRW_01168	-	0.39	0.38	0.39	156	900758	258	36	203	19	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	167	1593511	375	57	270	48	339
CRW_01186	-	0.29	0.28	0.30	108	836211	262	31	221	10	278
CRW_01188	-	0.17	0.17	0.17	67	837468	337	52	278	7	326
CRW_01189	-	0.21	0.20	0.22	80	862278	296	42	241	13	312
CRW_01214	-	0.26	0.24	0.28	96	931948	260	36	215	9	309
CRW_01222	-	0.24	0.24	0.24	96	912884	300	60	236	4	301
CRW_01224	-	0.36	0.34	0.37	134	912918	235	31	193	11	263
CRW_01239	-	0.26	0.26	0.27	98	840090	286	37	231	18	284
CRW_01250	-	0.34	0.31	0.38	118	781561	210	24	172	14	260
CRW_01260	-	0.16	0.15	0.17	60	912929	292	42	245	5	333
CRW_01266	-	0.26	0.27	0.26	101	818174	296	45	240	11	280
CRW_01271	-	0.36	0.36	0.36	137	827165	249	36	203	10	244
CRW_01275	-	0.39	0.38	0.40	164	1082246	265	39	207	19	268
CRW_01283	-	0.26	0.24	0.28	99	963611	268	33	223	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.35	177	1693219	370	60	264	46	338
CRW_01314	-	0.30	0.29	0.32	116	937404	259	31	214	14	291
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.35	0.38	154	977498	261	31	218	12	280
CRW_01344	-	0.31	0.29	0.33	106	791590	228	33	182	13	260
CRW_01456	-	0.30	0.30	0.30	252	4240491	607	61	524	22	599
PDB_00187	-	0.34	0.36	0.33	259	3746158	603	110	426	67	457
PDB_00401	-	0.43	0.39	0.46	376	3996569	461	47	386	28	577
PDB_00409	-	0.32	0.37	0.27	91	688216	320	75	169	76	154
PDB_00609	-	0.37	0.38	0.35	298	4156445	608	103	440	65	492
PDB_00644	-	0.37	0.38	0.37	309	4328311	599	100	433	66	511
PDB_00675	-	0.45	0.41	0.50	400	4168024	439	38	366	35	574
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.62	259	1073427	187	20	139	28	236
PDB_00704	-	0.39	0.37	0.43	357	4249230	517	51	432	34	616
PDB_00805	-	0.62	0.59	0.65	178	467755	124	14	81	29	124
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	298	1500283	247	21	176	50	237
PDB_00947	-	0.64	0.64	0.65	476	4310786	416	50	204	162	273
PDB_00993	-	0.35	0.35	0.34	284	3923374	594	93	450	51	518
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.35	176	1470965	353	46	283	24	371
PDB_01089	-	0.51	0.51	0.51	384	4053378	468	79	287	102	375
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.60	0.67	337	1606027	197	18	146	33	225
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.60	289	1433488	229	24	170	35	251
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.46	211	1204672	264	28	217	19	316
PDB_01140	-	0.55	0.53	0.57	489	4176638	416	49	319	48	441
PDB_01261	-	0.74	0.65	0.85	218	467773	41	0	37	4	118
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.46	211	1117804	273	31	214	28	280

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	44002
Total TN	437643777
Total FP	97987
Total FP CONTRA	12548
Total FP INCONS	62662
Total FP COMP	22777
Total FN	71635

Total Scores
MCC	0.375
Average MCC ± 95% Confidence Intervals	0.371 ± 0.016
Sensitivity	0.381
Positive Predictive Value	0.369
Nr of predictions	273

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.53	0.53	0.54	111	3173733	670	15	81	574	98
CRW_00002	-	0.58	0.56	0.61	148	408817	138	17	78	43	116
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	140	1015595	312	49	241	22	292
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.42	181	1123819	271	41	209	21	280
CRW_00294	-	0.28	0.31	0.26	179	2620222	594	116	388	90	407
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.24	0.21	118	1620334	479	100	348	31	376
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	156	1761959	461	80	308	73	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	153	1805378	473	77	342	54	368
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.19	0.21	0.18	99	1769473	516	102	347	67	378
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	169	1891947	449	66	303	80	345
CRW_00338	-	0.15	0.17	0.14	67	1052953	418	90	316	12	328
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	171	1586345	407	61	294	52	327
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	175	1584535	423	75	305	43	326
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	142	1614977	433	60	324	49	361
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	148	1640226	440	80	312	48	358
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00374	-	0.31	0.31	0.30	170	2182445	490	57	333	100	380
CRW_00375	-	0.26	0.27	0.25	146	2298853	533	71	370	92	395
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00381	-	0.32	0.33	0.31	186	2303125	522	73	347	102	371
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00400	-	0.25	0.27	0.24	131	2677916	622	66	342	214	363
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	157	1606045	425	57	269	99	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00417	-	0.30	0.29	0.32	76	458165	174	28	134	12	186
CRW_00418	-	0.14	0.13	0.15	34	441098	211	19	179	13	226
CRW_00419	-	0.16	0.16	0.17	42	463913	217	25	186	6	223
CRW_00421	-	0.49	0.47	0.51	126	462954	141	24	99	18	140
CRW_00422	-	0.32	0.32	0.33	83	455280	189	26	146	17	180
CRW_00424	-	0.44	0.44	0.44	161	789032	227	29	174	24	202
CRW_00426	-	0.26	0.26	0.26	68	457189	195	30	159	6	197
CRW_00427	-	0.24	0.23	0.25	61	454334	201	29	157	15	200
CRW_00428	-	0.36	0.35	0.36	91	465844	176	24	136	16	169
CRW_00430	-	0.22	0.21	0.22	56	456237	204	35	162	7	210
CRW_00433	-	0.42	0.39	0.45	102	467799	136	13	114	9	161
CRW_00434	-	0.40	0.38	0.42	100	457206	144	18	122	4	163
CRW_00435	-	0.32	0.31	0.34	83	451478	174	21	143	10	182
CRW_00437	-	0.22	0.22	0.23	57	456240	202	25	168	9	203
CRW_00438	-	0.19	0.19	0.20	50	454329	210	25	177	8	218
CRW_00441	-	0.24	0.22	0.25	58	454352	180	18	153	9	204
CRW_00442	-	0.32	0.31	0.33	82	453381	173	35	130	8	179
CRW_00443	-	0.24	0.23	0.25	59	456251	195	29	151	15	201
CRW_00444	-	0.32	0.30	0.34	80	459124	164	21	136	7	183
CRW_00445	-	0.32	0.30	0.33	80	458162	171	27	134	10	185
CRW_00446	-	0.27	0.26	0.27	70	468738	204	30	158	16	195
CRW_00447	-	0.31	0.30	0.31	79	452419	195	25	153	17	181
CRW_00448	-	0.39	0.38	0.41	98	457205	160	18	125	17	163
CRW_00449	-	0.33	0.33	0.34	85	444846	172	31	134	7	175
CRW_00450	-	0.36	0.34	0.38	90	458169	159	18	126	15	172
CRW_00451	-	0.24	0.24	0.25	63	457195	200	28	160	12	201
CRW_00452	-	0.23	0.22	0.25	57	453397	191	26	148	17	205
CRW_00453	-	0.33	0.32	0.34	83	452432	168	28	133	7	178
CRW_00454	-	0.23	0.24	0.22	103	1730260	477	71	296	110	332
CRW_00456	-	0.29	0.26	0.31	70	470711	170	16	138	16	195
CRW_00457	-	0.34	0.33	0.35	88	467778	176	23	139	14	176
CRW_00458	-	0.43	0.44	0.43	115	464864	165	23	128	14	149
CRW_00459	-	0.29	0.28	0.30	74	461992	195	26	149	20	189
CRW_00460	-	0.30	0.30	0.29	164	1972529	486	53	345	88	380
CRW_00462	-	0.24	0.23	0.25	59	458166	189	26	152	11	202
CRW_00463	-	0.37	0.36	0.38	92	445795	161	27	126	8	162
CRW_00464	-	0.41	0.38	0.43	101	462008	144	14	118	12	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00468	-	0.51	0.52	0.51	442	4290117	464	85	341	38	413
CRW_00471	-	0.38	0.38	0.38	335	4211372	567	76	470	21	536
CRW_00474	-	0.53	0.54	0.53	452	3976751	450	66	341	43	384
CRW_00476	-	0.41	0.41	0.41	363	4278379	566	74	459	33	516
CRW_00478	-	0.46	0.46	0.46	401	4150647	502	84	389	29	462
CRW_00487	-	0.55	0.54	0.55	475	4223009	426	72	315	39	397
CRW_00488	-	0.39	0.39	0.39	344	4325323	574	76	468	30	542
CRW_00490	-	0.34	0.34	0.33	296	4144871	628	83	510	35	566
CRW_00495	-	0.45	0.44	0.45	377	4205615	499	62	396	41	481
CRW_00496	-	0.45	0.45	0.46	389	4194006	493	45	416	32	477
CRW_00497	-	0.51	0.52	0.50	429	4402166	484	80	353	51	393
CRW_00499	-	0.47	0.47	0.47	419	4372520	494	54	410	30	464
CRW_00500	-	0.44	0.45	0.44	388	4205573	518	74	415	29	480
CRW_00501	-	0.44	0.44	0.44	384	4284264	504	68	412	24	484
CRW_00502	-	0.63	0.63	0.64	548	4295987	354	56	255	43	324
CRW_00503	-	0.42	0.43	0.41	372	4252089	559	75	450	34	495
CRW_00507	-	0.44	0.44	0.44	381	4173736	517	68	420	29	484
CRW_00509	-	0.37	0.37	0.37	325	4182395	593	79	479	35	542
CRW_00511	-	0.43	0.43	0.43	365	4107562	511	57	427	27	491
CRW_00512	-	0.58	0.58	0.58	475	3814889	373	63	276	34	344
CRW_00516	-	0.49	0.49	0.50	430	4272560	474	63	373	38	446
CRW_00518	-	0.35	0.35	0.35	312	4357745	592	72	499	21	572
CRW_00519	-	0.61	0.63	0.60	521	4246284	408	49	301	58	311
CRW_00520	-	0.50	0.50	0.50	426	4208505	462	64	356	42	424
CRW_00521	-	0.28	0.29	0.27	241	4136249	656	103	533	20	603
CRW_00522	-	0.22	0.23	0.21	179	3642805	696	102	564	30	603
CRW_00525	-	0.25	0.26	0.24	214	4058921	736	78	612	46	599
CRW_00530	-	0.21	0.24	0.19	64	534765	273	67	199	7	204
CRW_00532	-	0.15	0.17	0.14	45	579095	303	75	211	17	220
CRW_00533	-	0.31	0.33	0.30	73	453381	235	36	138	61	146
CRW_00534	-	0.34	0.35	0.32	171	1832124	401	76	284	41	312
CRW_00535	-	0.29	0.31	0.26	103	898081	308	73	213	22	225
CRW_00538	-	0.33	0.35	0.31	104	811840	258	55	176	27	196
CRW_00542	-	0.18	0.20	0.16	62	994361	387	78	254	55	255
CRW_00545	-	0.34	0.36	0.31	70	1343755	377	43	112	222	123
CRW_00547	-	0.47	0.48	0.47	413	4278393	509	68	401	40	450
CRW_00579	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00583	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00594	-	0.28	0.29	0.26	116	1028450	360	57	272	31	279
CRW_00596	-	0.21	0.23	0.20	87	1024171	354	57	281	16	299
CRW_00597	-	0.22	0.23	0.21	94	1200029	396	45	307	44	317
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.37	0.34	181	1665691	415	68	285	62	310
CRW_00599	-	0.38	0.39	0.38	212	3754606	721	58	294	369	334
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.84	0.84	0.84	77	559061	255	5	10	240	15
CRW_00607	-	0.52	0.52	0.51	40	536052	283	11	27	245	37
CRW_00615	-	0.65	0.70	0.61	57	553785	271	15	21	235	25
CRW_00616	-	0.48	0.52	0.45	57	1699118	505	21	50	434	53
CRW_00617	-	0.31	0.34	0.28	22	426347	269	11	46	212	42
CRW_00678	-	0.43	0.46	0.39	56	666292	324	18	69	237	65
CRW_00680	-	0.45	0.48	0.42	58	516498	256	16	64	176	64
CRW_00683	-	0.24	0.29	0.19	39	460117	283	49	115	119	96
CRW_00684	-	0.36	0.41	0.33	55	612002	303	40	74	189	80
CRW_00702	-	0.62	0.77	0.50	58	357319	208	43	15	150	17
CRW_00704	-	0.87	0.87	0.86	82	386665	190	4	9	177	12
CRW_00705	-	0.36	0.43	0.30	37	1461070	501	31	57	413	49
CRW_00706	-	0.60	0.68	0.53	40	695535	350	17	18	315	19
CRW_00708	-	0.59	0.64	0.55	42	3457059	774	17	17	740	24
CRW_00709	-	0.03	0.04	0.02	3	1728743	590	35	89	466	82
CRW_00710	-	0.58	0.62	0.54	71	1040272	379	23	37	319	43
CRW_00711	-	0.34	0.38	0.31	47	2318631	636	36	67	533	77
CRW_00712	-	0.47	0.55	0.41	59	952746	390	27	58	305	49
CRW_00713	-	0.77	0.72	0.81	73	731355	309	0	17	292	28
CRW_00723	-	0.46	0.54	0.39	40	1583207	517	24	39	454	34
CRW_00724	-	0.70	0.74	0.67	130	3231959	620	25	39	556	46
CRW_00725	-	0.41	0.49	0.35	86	1956982	523	72	91	360	88
CRW_00726	-	0.70	0.73	0.67	136	3378497	646	24	43	579	51
CRW_00730	-	0.54	0.58	0.51	94	338891	170	23	68	79	67
CRW_00732	-	0.39	0.50	0.31	58	3401948	738	63	67	608	59
CRW_00734	-	0.22	0.29	0.17	32	536981	261	67	86	108	78
CRW_00735	-	0.33	0.40	0.27	49	677849	308	52	80	176	72
CRW_00740	-	0.00	0.00	0.00	0	489347	301	85	123	93	113
CRW_00742	-	0.38	0.43	0.33	73	1723075	525	49	99	377	95
CRW_00743	-	0.21	0.26	0.16	39	2224753	638	83	120	435	110
CRW_00744	-	0.59	0.61	0.57	114	3433311	786	10	75	701	72
CRW_00745	-	0.51	0.59	0.43	91	1343770	391	51	68	272	63
CRW_00746	-	0.47	0.50	0.44	109	550480	213	29	107	77	110
CRW_00747	-	0.20	0.22	0.19	41	3722137	823	47	131	645	147
CRW_00749	-	0.33	0.37	0.28	67	3058864	722	39	131	552	112
CRW_00750	-	0.51	0.58	0.46	92	709636	274	27	81	166	68
CRW_00751	-	0.59	0.64	0.55	114	489348	200	26	67	107	64
CRW_00752	-	0.39	0.47	0.32	86	2975313	700	59	122	519	98
CRW_00753	-	0.16	0.18	0.14	32	489318	282	64	141	77	146
CRW_00757	-	0.07	0.09	0.06	11	415245	270	48	112	110	115
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.24	127	1640244	444	62	333	49	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.26	140	1638417	454	75	323	56	346
CRW_00761	-	0.18	0.20	0.17	93	2863859	739	102	367	270	381
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215568	391	45	317	29	356
CRW_00765	-	0.26	0.26	0.26	67	452416	202	38	155	9	190
CRW_00766	-	0.25	0.25	0.26	60	440159	189	16	156	17	180
CRW_00768	-	0.54	0.53	0.56	136	471665	136	16	89	31	123
CRW_00769	-	0.54	0.53	0.54	134	451477	134	23	91	20	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00773	-	0.40	0.40	0.40	103	451467	176	27	128	21	156
CRW_00774	-	0.36	0.35	0.38	91	488329	164	18	128	18	172
CRW_00777	-	0.38	0.39	0.36	119	719073	249	40	168	41	185
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.27	0.28	0.26	107	1201617	345	45	256	44	277
CRW_00779	-	0.31	0.31	0.31	129	1031345	316	42	250	24	293
CRW_00780	-	0.25	0.24	0.26	60	475567	188	23	150	15	195
CRW_00781	-	0.24	0.26	0.22	115	1978539	519	81	320	118	335
CRW_00783	-	0.23	0.23	0.23	60	453368	207	23	177	7	199
CRW_00784	-	0.27	0.27	0.28	70	456240	194	30	150	14	192
CRW_00785	-	0.29	0.27	0.30	69	452448	173	17	142	14	184
CRW_00786	-	0.35	0.37	0.33	165	1946858	484	44	284	156	285
CRW_00787	-	0.29	0.29	0.29	89	646643	234	33	188	13	217
CRW_00788	-	0.22	0.23	0.21	84	1758353	510	56	257	197	277
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00790	-	0.25	0.27	0.23	120	1803531	489	65	334	90	327
CRW_00792	-	0.24	0.25	0.23	95	1581110	472	71	255	146	288
CRW_00793	-	0.39	0.40	0.38	152	1048673	299	48	203	48	225
CRW_00794	-	0.28	0.28	0.28	70	434531	199	17	160	22	176
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00796	-	0.40	0.38	0.42	89	384792	147	9	113	25	146
CRW_00797	-	0.39	0.39	0.39	133	692912	235	25	183	27	209
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	300	34	192	74	227
CRW_00801	-	0.35	0.35	0.35	86	438269	178	26	135	17	163
CRW_00802	-	0.22	0.22	0.21	56	460057	221	35	172	14	197
CRW_00803	-	0.21	0.22	0.19	100	1952749	528	80	347	101	349
CRW_00804	-	0.28	0.28	0.27	114	1420031	431	54	256	121	289
CRW_00806	-	0.20	0.21	0.19	96	1913442	521	61	347	113	353
CRW_00807	-	0.35	0.35	0.34	140	1391539	376	33	234	109	258
CRW_00808	-	0.31	0.34	0.29	120	1301275	391	84	212	95	236
CRW_00813	-	0.37	0.41	0.33	55	530799	266	29	82	155	78
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01134	-	0.34	0.34	0.34	144	964931	297	39	241	17	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01168	-	0.38	0.38	0.38	156	900737	282	38	222	22	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01186	-	0.26	0.26	0.25	100	836177	308	34	260	14	286
CRW_01188	-	0.18	0.18	0.17	72	837448	352	58	287	7	321
CRW_01189	-	0.16	0.16	0.16	64	862233	359	43	301	15	328
CRW_01214	-	0.25	0.25	0.25	101	931894	308	40	260	8	304
CRW_01222	-	0.26	0.26	0.26	104	912871	314	56	245	13	293
CRW_01224	-	0.32	0.31	0.33	122	912904	267	27	223	17	275
CRW_01239	-	0.25	0.25	0.24	96	840063	314	45	252	17	286
CRW_01250	-	0.44	0.44	0.43	165	781495	235	32	183	20	213
CRW_01260	-	0.11	0.12	0.11	46	912863	372	54	313	5	347
CRW_01266	-	0.29	0.30	0.28	114	818158	296	43	245	8	267
CRW_01271	-	0.35	0.36	0.35	137	827145	270	36	223	11	244
CRW_01275	-	0.33	0.34	0.33	147	1082206	327	50	253	24	285
CRW_01283	-	0.22	0.22	0.22	92	963553	336	44	277	15	317
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	150	1693165	443	63	342	38	365
CRW_01314	-	0.24	0.23	0.24	94	937373	309	32	266	11	313
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977486	272	36	221	15	276
CRW_01344	-	0.30	0.31	0.30	112	791539	272	37	223	12	254
CRW_01456	-	0.29	0.29	0.28	251	4240442	660	81	554	25	600
PDB_00187	-	0.33	0.35	0.31	248	3746141	631	118	446	67	468
PDB_00401	-	0.43	0.41	0.45	388	3996522	500	57	411	32	565
PDB_00409	-	0.27	0.31	0.23	77	688211	338	75	188	75	168
PDB_00609	-	0.30	0.31	0.29	245	4156432	666	103	506	57	545
PDB_00644	-	0.35	0.36	0.34	293	4328291	633	100	469	64	527
PDB_00675	-	0.44	0.42	0.47	408	4167964	494	55	401	38	566
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00704	-	0.42	0.40	0.45	391	4249194	518	66	419	33	582
PDB_00805	-	0.62	0.61	0.63	183	467737	137	13	95	29	119
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00947	-	0.58	0.60	0.57	448	4310725	491	64	279	148	301
PDB_00993	-	0.30	0.31	0.29	248	3923351	648	99	503	46	554
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01089	-	0.49	0.50	0.49	377	4053361	515	77	313	125	382
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01140	-	0.52	0.51	0.54	475	4176612	456	57	351	48	455
PDB_01261	-	0.59	0.54	0.64	182	467742	108	6	98	4	154
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]