CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MaxExpect		ProbKnot
MCC	0.407	>	0.400
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017	>	0.400 ± 0.017
Sensitivity	0.396	<	0.396
Positive Predictive Value	0.418	>	0.403
Total TP	45809	<	45837
Total TN	437653518	>	437649346
Total FP	84964	<	91537
Total FP CONTRA	10114	<	12116
Total FP INCONS	53548	<	55690
Total FP COMP	21302	<	23731
Total FN	69828	>	69800
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MaxExpect and ProbKnot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MaxExpect and ProbKnot).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MaxExpect and ProbKnot).
Comparison of average Matthews Correlation Coefficients (MCCs) for MaxExpect and ProbKnot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MaxExpect and ProbKnot).

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Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	45809
Total TN	437653518
Total FP	84964
Total FP CONTRA	10114
Total FP INCONS	53548
Total FP COMP	21302
Total FN	69828

Total Scores
MCC	0.407
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.418
Nr of predictions	273

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2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.59	0.56	0.61	117	3173749	620	6	68	546	92
CRW_00002	-	0.63	0.57	0.70	151	408844	107	5	60	42	113
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.71	0.70	0.71	320	1085152	169	17	112	40	138
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.66	310	1141844	191	28	134	29	164
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.48	0.57	226	1170816	189	20	153	16	244
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	192	1107377	261	23	224	14	264
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.54	232	1172316	212	16	182	14	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1181497	266	35	218	13	273
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	197	1108869	251	32	207	12	260
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.52	220	1178453	229	21	186	22	245
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	193	1135835	265	20	230	15	270
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	254	1201566	230	30	175	25	222
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.46	202	1152479	257	24	216	17	264
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	259	1179986	190	37	134	19	212
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.46	192	1190777	241	18	209	14	276
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.26	0.26	0.27	115	1082230	324	28	283	13	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	221	1178440	239	26	193	20	252
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1207782	238	32	188	18	242
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	263	1198489	199	15	159	25	215
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1105895	262	25	222	15	267
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.51	248	1218656	263	29	208	26	236
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	241	1198458	244	44	183	17	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.39	0.41	182	1192293	285	38	227	20	286
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.55	244	1111842	223	23	177	23	211
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	146	1122327	292	34	244	14	316
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.42	0.40	0.45	180	1085197	237	27	197	13	266
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1114831	186	26	141	19	184
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	148	1110390	267	37	220	10	305
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.39	0.36	0.42	160	1129876	240	22	198	20	290
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.56	244	1179977	213	26	169	18	220
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1117836	279	37	230	12	296
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	270	1144891	201	25	155	21	194
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	146	1015622	282	41	216	25	286
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.38	0.35	0.41	159	1131368	249	21	212	16	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	246	1117835	199	26	153	20	212
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	218	1189213	245	32	190	23	258
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	150	1123843	269	39	218	12	311
CRW_00294	-	0.35	0.37	0.33	217	2620253	526	104	331	91	369
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.24	123	1620380	438	79	318	41	371
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	180	1761991	393	60	272	61	339
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445370	462	62	332	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	157	1805427	422	63	303	56	364
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	205	1627618	330	55	232	43	297
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	172	1988480	429	65	298	66	345
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.18	0.17	87	1769512	473	87	335	51	390
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.35	166	1892006	380	65	248	67	348
CRW_00338	-	0.17	0.19	0.16	74	1052974	390	83	295	12	321
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	174	1586388	361	52	257	52	324
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	361	62	259	40	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.33	151	1615043	353	51	258	44	352
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	206	1674869	336	56	234	46	301
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	134	1579236	421	78	305	38	348
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1640256	403	77	282	44	355
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.40	0.39	0.42	192	1611452	316	45	221	50	304
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	139	1625798	414	78	291	45	359
CRW_00374	-	0.34	0.32	0.35	178	2182499	406	42	286	78	372
CRW_00375	-	0.31	0.31	0.31	166	2298906	437	63	305	69	375
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.44	0.43	234	2126414	384	57	248	79	300
CRW_00381	-	0.34	0.33	0.35	185	2303200	450	58	288	104	372
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750712	440	78	328	34	377
CRW_00400	-	0.29	0.29	0.29	144	2677952	564	62	297	205	350
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	144	1606062	415	58	264	93	320
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	163	1615021	361	68	251	42	333
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.30	153	1665712	421	60	300	61	342
CRW_00417	-	0.36	0.34	0.39	88	458179	146	24	112	10	174
CRW_00418	-	0.18	0.16	0.20	42	441120	176	15	153	8	218
CRW_00419	-	0.20	0.17	0.22	46	463957	168	14	149	5	219
CRW_00421	-	0.48	0.45	0.52	119	462976	126	15	93	18	147
CRW_00422	-	0.40	0.39	0.42	102	455291	162	21	121	20	161
CRW_00424	-	0.42	0.39	0.44	142	789075	201	18	161	22	221
CRW_00426	-	0.32	0.31	0.34	83	457199	173	24	140	9	182
CRW_00427	-	0.26	0.24	0.28	62	454361	174	27	131	16	199
CRW_00428	-	0.37	0.35	0.39	91	465860	158	24	120	14	169
CRW_00430	-	0.37	0.30	0.46	79	456317	101	12	82	7	187
CRW_00433	-	0.29	0.24	0.35	64	467846	124	10	108	6	199
CRW_00434	-	0.46	0.42	0.51	111	457227	117	19	89	9	152
CRW_00435	-	0.41	0.37	0.46	97	451515	119	8	105	6	168
CRW_00437	-	0.33	0.27	0.40	70	456316	108	16	88	4	190
CRW_00438	-	0.45	0.41	0.49	111	454354	125	17	99	9	157
CRW_00441	-	0.26	0.21	0.31	56	454399	130	14	112	4	206
CRW_00442	-	0.38	0.35	0.41	92	453401	144	32	103	9	169
CRW_00443	-	0.29	0.25	0.34	65	456299	140	18	108	14	195
CRW_00444	-	0.30	0.29	0.33	75	459131	162	23	132	7	188
CRW_00445	-	0.32	0.29	0.34	78	458175	161	28	122	11	187
CRW_00446	-	0.30	0.28	0.32	74	468762	173	19	141	13	191
CRW_00447	-	0.35	0.33	0.38	86	452448	159	15	127	17	174
CRW_00448	-	0.36	0.31	0.40	82	457243	134	16	105	13	179
CRW_00449	-	0.38	0.35	0.40	91	444871	140	22	112	6	169
CRW_00450	-	0.36	0.31	0.43	80	458217	118	6	100	12	182
CRW_00451	-	0.26	0.25	0.28	65	457212	182	22	147	13	199
CRW_00452	-	0.29	0.26	0.32	67	453421	158	17	123	18	195
CRW_00453	-	0.32	0.30	0.35	78	452450	155	25	123	7	183
CRW_00454	-	0.18	0.18	0.18	78	1730297	469	58	297	114	357
CRW_00456	-	0.37	0.32	0.44	84	470743	119	21	87	11	181
CRW_00457	-	0.42	0.39	0.46	103	467805	134	17	103	14	161
CRW_00458	-	0.49	0.46	0.52	122	464894	129	22	92	15	142
CRW_00459	-	0.37	0.34	0.40	90	462015	154	22	114	18	173
CRW_00460	-	0.33	0.33	0.33	180	1972551	449	47	313	89	364
CRW_00462	-	0.39	0.33	0.46	86	458215	114	9	93	12	175
CRW_00463	-	0.36	0.35	0.38	88	445809	151	25	118	8	166
CRW_00464	-	0.27	0.24	0.32	63	462041	145	14	123	8	201
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	188	25	142	21	185
CRW_00468	-	0.55	0.53	0.57	449	4290203	371	51	282	38	406
CRW_00471	-	0.43	0.42	0.44	364	4211430	482	62	397	23	507
CRW_00474	-	0.55	0.54	0.56	453	3976798	398	62	297	39	383
CRW_00476	-	0.45	0.43	0.46	382	4278441	484	69	383	32	497
CRW_00478	-	0.55	0.54	0.56	462	4150691	398	61	307	30	401
CRW_00487	-	0.54	0.52	0.56	454	4223053	398	58	306	34	418
CRW_00488	-	0.48	0.45	0.50	399	4325415	430	55	342	33	487
CRW_00490	-	0.36	0.36	0.36	312	4144896	585	82	470	33	550
CRW_00495	-	0.46	0.45	0.48	387	4205642	448	49	372	27	471
CRW_00496	-	0.48	0.46	0.50	399	4194050	444	43	364	37	467
CRW_00497	-	0.48	0.48	0.48	398	4402195	480	74	361	45	424
CRW_00499	-	0.56	0.54	0.59	477	4372592	365	45	289	31	406
CRW_00500	-	0.46	0.45	0.47	394	4205613	469	69	374	26	474
CRW_00501	-	0.44	0.43	0.45	369	4284303	483	66	390	27	499
CRW_00502	-	0.65	0.63	0.67	550	4296030	306	39	227	40	322
CRW_00503	-	0.45	0.43	0.46	374	4252172	465	61	379	25	493
CRW_00507	-	0.36	0.35	0.38	299	4173820	506	54	432	20	566
CRW_00509	-	0.49	0.46	0.51	397	4182506	409	43	332	34	470
CRW_00511	-	0.46	0.44	0.48	380	4107613	445	39	379	27	476
CRW_00512	-	0.58	0.55	0.61	449	3814963	314	52	239	23	370
CRW_00516	-	0.62	0.58	0.66	512	4272654	300	28	232	40	364
CRW_00518	-	0.36	0.34	0.38	298	4357837	515	67	426	22	586
CRW_00519	-	0.71	0.70	0.72	586	4246346	282	32	191	59	246
CRW_00520	-	0.53	0.52	0.54	438	4208541	405	63	309	33	412
CRW_00521	-	0.45	0.42	0.49	351	4136414	392	52	309	31	493
CRW_00522	-	0.28	0.27	0.29	213	3642919	543	80	438	25	569
CRW_00525	-	0.27	0.28	0.26	227	4058941	698	74	583	41	586
CRW_00530	-	0.33	0.34	0.32	90	534810	205	54	141	10	178
CRW_00532	-	0.18	0.18	0.17	49	579145	242	61	171	10	216
CRW_00533	-	0.39	0.38	0.41	83	453424	169	20	101	48	136
CRW_00534	-	0.40	0.40	0.41	191	1832193	313	53	218	42	292
CRW_00535	-	0.31	0.31	0.30	102	898131	252	53	184	15	226
CRW_00538	-	0.34	0.30	0.38	91	811934	171	43	107	21	209
CRW_00542	-	0.20	0.21	0.19	65	994419	320	59	212	49	252
CRW_00545	-	0.26	0.26	0.25	50	1343782	354	35	113	206	143
CRW_00547	-	0.50	0.48	0.52	416	4278470	423	41	348	34	447
CRW_00579	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00583	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.34	136	1094057	285	28	239	18	309
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.43	169	1119363	246	23	201	22	283
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	194	1098463	264	36	210	18	252
CRW_00594	-	0.26	0.27	0.25	107	1028468	350	47	273	30	288
CRW_00596	-	0.22	0.23	0.22	87	1024209	323	42	258	23	299
CRW_00597	-	0.25	0.26	0.25	105	1200059	356	39	272	45	306
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.38	0.39	0.38	190	1665724	360	63	248	49	301
CRW_00599	-	0.37	0.37	0.37	203	3754627	701	59	281	361	343
CRW_00604	-	0.90	0.88	0.93	71	411702	185	1	4	180	10
CRW_00606	-	0.87	0.84	0.90	77	559067	237	0	9	228	15
CRW_00607	-	0.66	0.65	0.67	50	536055	254	9	16	229	27
CRW_00615	-	0.70	0.72	0.68	59	553791	259	11	17	231	23
CRW_00616	-	0.73	0.67	0.80	74	1699153	375	2	17	356	36
CRW_00617	-	0.48	0.48	0.48	31	426362	233	10	23	200	33
CRW_00678	-	0.45	0.45	0.44	55	666309	273	12	59	202	66
CRW_00680	-	0.60	0.61	0.60	74	516512	219	10	40	169	48
CRW_00683	-	0.30	0.33	0.27	44	460156	239	29	91	119	91
CRW_00684	-	0.45	0.45	0.46	61	612037	256	19	54	183	74
CRW_00702	-	0.70	0.76	0.64	57	357346	172	24	8	140	18
CRW_00704	-	0.87	0.86	0.87	81	386667	187	2	10	175	13
CRW_00705	-	0.38	0.43	0.33	37	1461084	448	26	48	374	49
CRW_00706	-	0.55	0.59	0.51	35	695541	326	15	19	292	24
CRW_00708	-	0.59	0.64	0.55	42	3457059	696	16	18	662	24
CRW_00709	-	0.03	0.04	0.03	3	1728765	540	24	78	438	82
CRW_00710	-	0.63	0.66	0.60	75	1040278	345	22	28	295	39
CRW_00711	-	0.37	0.38	0.36	47	2318649	581	31	54	496	77
CRW_00712	-	0.70	0.70	0.69	76	952780	350	4	30	316	32
CRW_00713	-	0.81	0.74	0.88	75	731360	279	2	8	269	26
CRW_00723	-	0.57	0.51	0.62	38	1583249	453	4	19	430	36
CRW_00724	-	0.71	0.73	0.69	129	3231967	557	17	40	500	47
CRW_00725	-	0.46	0.51	0.41	89	1957015	447	47	80	320	85
CRW_00726	-	0.70	0.73	0.67	136	3378498	595	24	42	529	51
CRW_00730	-	0.56	0.58	0.53	94	338898	165	19	65	81	67
CRW_00732	-	0.41	0.50	0.33	59	3401958	678	66	53	559	58
CRW_00734	-	0.20	0.25	0.16	28	536995	212	74	69	69	82
CRW_00735	-	0.36	0.42	0.30	51	677861	247	51	67	129	70
CRW_00740	-	0.04	0.05	0.04	6	489396	256	54	99	103	107
CRW_00742	-	0.63	0.59	0.67	99	1723149	427	6	42	379	69
CRW_00743	-	0.49	0.56	0.42	83	2224799	533	67	46	420	66
CRW_00744	-	0.68	0.68	0.69	126	3433328	692	6	50	636	60
CRW_00745	-	0.51	0.59	0.44	91	1343774	378	41	74	263	63
CRW_00746	-	0.49	0.50	0.48	109	550498	191	23	95	73	110
CRW_00747	-	0.28	0.29	0.26	54	3722151	719	32	119	568	134
CRW_00749	-	0.39	0.42	0.36	75	3058893	640	34	99	507	104
CRW_00750	-	0.53	0.57	0.49	91	709652	244	24	69	151	69
CRW_00751	-	0.84	0.83	0.86	148	489382	135	3	22	110	30
CRW_00752	-	0.38	0.43	0.33	80	2975338	651	47	115	489	104
CRW_00753	-	0.22	0.21	0.22	38	489385	207	31	101	75	140
CRW_00757	-	0.14	0.15	0.13	19	415264	235	35	98	102	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.34	155	1640308	356	41	262	53	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636649	407	59	286	62	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	143	1638449	415	65	298	52	343
CRW_00761	-	0.21	0.22	0.20	102	2863911	677	78	330	269	372
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.19	0.21	86	1215616	348	38	280	30	360
CRW_00765	-	0.40	0.37	0.43	95	452456	133	23	102	8	162
CRW_00766	-	0.35	0.30	0.40	72	440211	123	11	97	15	168
CRW_00768	-	0.43	0.40	0.46	103	471680	146	13	110	23	156
CRW_00769	-	0.56	0.54	0.59	135	451495	113	22	73	18	117
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.23	85	945632	297	29	254	14	319
CRW_00773	-	0.52	0.48	0.55	125	451499	119	17	84	18	134
CRW_00774	-	0.35	0.32	0.38	84	488343	157	18	121	18	179
CRW_00777	-	0.38	0.38	0.39	116	719100	221	34	150	37	188
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	112	1201643	316	45	225	46	272
CRW_00779	-	0.27	0.26	0.29	108	1031396	274	32	230	12	314
CRW_00780	-	0.27	0.24	0.30	61	475598	155	14	127	14	194
CRW_00781	-	0.26	0.26	0.25	118	1978581	470	59	297	114	332
CRW_00783	-	0.29	0.26	0.32	68	453413	156	11	136	9	191
CRW_00784	-	0.27	0.25	0.30	65	456271	172	27	127	18	197
CRW_00785	-	0.26	0.23	0.30	58	452481	145	20	117	8	195
CRW_00786	-	0.37	0.36	0.39	164	1946926	412	27	234	151	286
CRW_00787	-	0.44	0.40	0.47	123	646693	160	13	124	23	183
CRW_00788	-	0.34	0.31	0.38	111	1758454	398	29	156	213	250
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.38	165	1137350	293	39	232	22	282
CRW_00790	-	0.22	0.22	0.22	97	1803609	455	45	299	111	350
CRW_00792	-	0.30	0.28	0.32	107	1581193	378	31	200	147	276
CRW_00793	-	0.47	0.44	0.49	166	1048740	227	34	136	57	211
CRW_00794	-	0.29	0.28	0.31	68	434558	174	10	142	22	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	138	1152523	307	34	226	47	256
CRW_00796	-	0.29	0.27	0.32	64	384801	159	15	123	21	171
CRW_00797	-	0.39	0.38	0.41	130	692935	213	23	165	25	212
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	239	1401570	232	20	146	66	231
CRW_00801	-	0.39	0.36	0.42	90	438301	137	25	100	12	159
CRW_00802	-	0.20	0.18	0.22	45	460113	173	20	142	11	208
CRW_00803	-	0.24	0.25	0.23	111	1952785	462	64	316	82	338
CRW_00804	-	0.33	0.33	0.34	131	1420069	350	33	222	95	272
CRW_00806	-	0.27	0.27	0.27	122	1913491	446	43	290	113	327
CRW_00807	-	0.43	0.40	0.46	161	1391596	295	24	165	106	237
CRW_00808	-	0.27	0.27	0.27	97	1301332	370	49	213	108	259
CRW_00813	-	0.28	0.31	0.26	41	530808	255	40	76	139	92
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	271	1117802	215	14	173	28	199
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1135837	260	32	212	16	267
CRW_01134	-	0.37	0.35	0.40	148	964986	231	28	193	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1606020	397	56	301	40	352
CRW_01168	-	0.39	0.38	0.39	156	900758	258	36	203	19	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	167	1593511	375	57	270	48	339
CRW_01186	-	0.29	0.28	0.30	108	836211	262	31	221	10	278
CRW_01188	-	0.17	0.17	0.17	67	837468	337	52	278	7	326
CRW_01189	-	0.21	0.20	0.22	80	862278	296	42	241	13	312
CRW_01214	-	0.26	0.24	0.28	96	931948	260	36	215	9	309
CRW_01222	-	0.24	0.24	0.24	96	912884	300	60	236	4	301
CRW_01224	-	0.36	0.34	0.37	134	912918	235	31	193	11	263
CRW_01239	-	0.26	0.26	0.27	98	840090	286	37	231	18	284
CRW_01250	-	0.34	0.31	0.38	118	781561	210	24	172	14	260
CRW_01260	-	0.16	0.15	0.17	60	912929	292	42	245	5	333
CRW_01266	-	0.26	0.27	0.26	101	818174	296	45	240	11	280
CRW_01271	-	0.36	0.36	0.36	137	827165	249	36	203	10	244
CRW_01275	-	0.39	0.38	0.40	164	1082246	265	39	207	19	268
CRW_01283	-	0.26	0.24	0.28	99	963611	268	33	223	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.35	177	1693219	370	60	264	46	338
CRW_01314	-	0.30	0.29	0.32	116	937404	259	31	214	14	291
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.35	0.38	154	977498	261	31	218	12	280
CRW_01344	-	0.31	0.29	0.33	106	791590	228	33	182	13	260
CRW_01456	-	0.30	0.30	0.30	252	4240491	607	61	524	22	599
PDB_00187	-	0.34	0.36	0.33	259	3746158	603	110	426	67	457
PDB_00401	-	0.43	0.39	0.46	376	3996569	461	47	386	28	577
PDB_00409	-	0.32	0.37	0.27	91	688216	320	75	169	76	154
PDB_00609	-	0.37	0.38	0.35	298	4156445	608	103	440	65	492
PDB_00644	-	0.37	0.38	0.37	309	4328311	599	100	433	66	511
PDB_00675	-	0.45	0.41	0.50	400	4168024	439	38	366	35	574
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.62	259	1073427	187	20	139	28	236
PDB_00704	-	0.39	0.37	0.43	357	4249230	517	51	432	34	616
PDB_00805	-	0.62	0.59	0.65	178	467755	124	14	81	29	124
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	298	1500283	247	21	176	50	237
PDB_00947	-	0.64	0.64	0.65	476	4310786	416	50	204	162	273
PDB_00993	-	0.35	0.35	0.34	284	3923374	594	93	450	51	518
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.35	176	1470965	353	46	283	24	371
PDB_01089	-	0.51	0.51	0.51	384	4053378	468	79	287	102	375
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.60	0.67	337	1606027	197	18	146	33	225
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.60	289	1433488	229	24	170	35	251
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.46	211	1204672	264	28	217	19	316
PDB_01140	-	0.55	0.53	0.57	489	4176638	416	49	319	48	441
PDB_01261	-	0.74	0.65	0.85	218	467773	41	0	37	4	118
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.46	211	1117804	273	31	214	28	280

^top

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	45837
Total TN	437649346
Total FP	91537
Total FP CONTRA	12116
Total FP INCONS	55690
Total FP COMP	23731
Total FN	69800

Total Scores
MCC	0.400
Average MCC ± 95% Confidence Intervals	0.400 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.403
Nr of predictions	273

^top

2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.60	0.59	0.62	123	3173742	665	11	64	590	86
CRW_00002	-	0.62	0.61	0.64	161	408807	138	15	77	46	103
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	305	1141852	193	33	126	34	169
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	162	1129847	266	32	215	19	288
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	243	1179987	211	33	153	25	221
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	162	1015591	302	49	223	30	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.37	0.35	0.40	159	1131362	267	28	211	28	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	244	1117827	214	31	158	25	214
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	157	1123815	302	48	230	24	304
CRW_00294	-	0.35	0.37	0.32	218	2620232	548	114	341	93	368
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	119	1620359	466	89	333	44	375
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	177	1761960	439	71	295	73	342
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	160	1805396	450	77	317	56	361
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.41	0.40	207	1627588	371	65	250	56	295
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.31	178	1988449	473	80	308	85	339
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.17	90	1769489	491	93	349	49	387
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	157	1891971	430	72	285	73	357
CRW_00338	-	0.17	0.18	0.16	72	1052984	381	79	291	11	323
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	173	1586376	380	60	262	58	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	368	66	255	47	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	149	1615021	383	63	270	50	354
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1674852	365	59	252	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1640234	427	81	301	45	356
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.27	0.27	0.26	136	1625786	435	79	305	51	362
CRW_00374	-	0.31	0.31	0.30	173	2182437	493	71	324	98	377
CRW_00375	-	0.29	0.31	0.28	168	2298840	515	97	335	83	373
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00381	-	0.30	0.30	0.30	168	2303172	499	66	325	108	389
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750696	459	82	340	37	377
CRW_00400	-	0.28	0.28	0.27	140	2677942	577	66	307	204	354
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	143	1606064	418	64	257	97	321
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00417	-	0.38	0.35	0.41	92	458176	145	22	113	10	170
CRW_00418	-	0.17	0.16	0.18	41	441105	195	17	167	11	219
CRW_00419	-	0.22	0.20	0.23	53	463939	184	19	155	10	212
CRW_00421	-	0.47	0.44	0.51	118	462970	138	19	96	23	148
CRW_00422	-	0.40	0.39	0.41	102	455284	172	23	126	23	161
CRW_00424	-	0.40	0.38	0.41	138	789063	222	20	175	27	225
CRW_00426	-	0.33	0.31	0.34	83	457203	172	20	140	12	182
CRW_00427	-	0.27	0.27	0.27	70	454324	205	34	153	18	191
CRW_00428	-	0.36	0.36	0.36	93	465837	182	33	132	17	167
CRW_00430	-	0.34	0.30	0.38	80	456282	139	29	99	11	186
CRW_00433	-	0.27	0.23	0.31	61	467830	144	12	125	7	202
CRW_00434	-	0.40	0.39	0.42	102	457205	147	21	118	8	161
CRW_00435	-	0.41	0.38	0.45	101	451501	135	17	106	12	164
CRW_00437	-	0.31	0.28	0.34	73	456277	152	21	119	12	187
CRW_00438	-	0.46	0.43	0.50	115	454349	130	20	97	13	153
CRW_00441	-	0.24	0.22	0.26	57	454362	173	22	140	11	205
CRW_00442	-	0.39	0.39	0.38	102	453363	175	42	121	12	159
CRW_00443	-	0.29	0.27	0.30	71	456253	185	27	139	19	189
CRW_00444	-	0.29	0.28	0.31	74	459121	179	26	140	13	189
CRW_00445	-	0.31	0.29	0.32	78	458162	170	32	131	7	187
CRW_00446	-	0.31	0.31	0.31	82	468730	198	29	155	14	183
CRW_00447	-	0.35	0.35	0.36	90	452428	179	23	135	21	170
CRW_00448	-	0.31	0.30	0.33	78	457209	178	24	135	19	183
CRW_00449	-	0.38	0.37	0.39	97	444850	160	29	120	11	163
CRW_00450	-	0.34	0.30	0.39	79	458199	141	17	108	16	183
CRW_00451	-	0.27	0.27	0.28	70	457197	195	30	149	16	194
CRW_00452	-	0.31	0.29	0.33	77	453394	184	26	131	27	185
CRW_00453	-	0.30	0.30	0.32	77	452432	174	31	136	7	184
CRW_00454	-	0.17	0.18	0.17	78	1730265	502	72	315	115	357
CRW_00456	-	0.35	0.32	0.38	86	470708	157	22	119	16	179
CRW_00457	-	0.41	0.41	0.41	107	467768	172	31	122	19	157
CRW_00458	-	0.48	0.48	0.49	126	464874	149	26	104	19	138
CRW_00459	-	0.37	0.35	0.40	92	462012	157	22	115	20	171
CRW_00460	-	0.34	0.34	0.33	186	1972534	467	57	314	96	358
CRW_00462	-	0.36	0.33	0.40	85	458191	137	23	104	10	176
CRW_00463	-	0.36	0.35	0.37	89	445797	171	31	123	17	165
CRW_00464	-	0.28	0.26	0.30	69	462009	170	17	146	7	195
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00468	-	0.53	0.52	0.54	448	4290159	425	70	308	47	407
CRW_00471	-	0.43	0.42	0.44	362	4211426	494	76	389	29	509
CRW_00474	-	0.55	0.55	0.55	457	3976772	426	72	309	45	379
CRW_00476	-	0.43	0.43	0.44	379	4278410	527	82	404	41	500
CRW_00478	-	0.54	0.54	0.55	462	4150679	418	72	308	38	401
CRW_00487	-	0.52	0.51	0.53	449	4223019	446	74	329	43	423
CRW_00488	-	0.47	0.45	0.50	400	4325410	442	68	333	41	486
CRW_00490	-	0.35	0.34	0.35	297	4144908	593	86	469	38	565
CRW_00495	-	0.46	0.45	0.47	390	4205618	479	62	380	37	468
CRW_00496	-	0.48	0.46	0.49	401	4194039	456	57	359	40	465
CRW_00497	-	0.47	0.48	0.46	394	4402180	499	91	363	45	428
CRW_00499	-	0.54	0.52	0.56	461	4372583	404	59	300	45	422
CRW_00500	-	0.46	0.46	0.47	395	4205604	489	86	365	38	473
CRW_00501	-	0.42	0.41	0.43	355	4284308	501	75	390	36	513
CRW_00502	-	0.64	0.62	0.65	543	4296015	342	53	235	54	329
CRW_00503	-	0.44	0.44	0.45	381	4252131	514	75	399	40	486
CRW_00507	-	0.38	0.37	0.39	317	4173790	521	75	423	23	548
CRW_00509	-	0.47	0.45	0.48	392	4182467	458	67	352	39	475
CRW_00511	-	0.46	0.45	0.48	384	4107603	455	49	375	31	472
CRW_00512	-	0.58	0.56	0.60	457	3814941	338	67	238	33	362
CRW_00516	-	0.61	0.59	0.63	515	4272613	348	43	255	50	361
CRW_00518	-	0.35	0.34	0.37	301	4357805	555	79	443	33	583
CRW_00519	-	0.70	0.69	0.71	573	4246346	301	47	189	65	259
CRW_00520	-	0.51	0.51	0.52	436	4208508	447	82	325	40	414
CRW_00521	-	0.44	0.43	0.46	359	4136343	458	71	353	34	485
CRW_00522	-	0.27	0.28	0.26	218	3642809	656	120	503	33	564
CRW_00525	-	0.27	0.28	0.26	224	4058965	681	79	557	45	589
CRW_00530	-	0.31	0.34	0.29	90	534781	233	62	162	9	178
CRW_00532	-	0.17	0.18	0.15	49	579103	287	75	199	13	216
CRW_00533	-	0.40	0.42	0.38	92	453389	204	31	116	57	127
CRW_00534	-	0.37	0.38	0.37	185	1832150	371	67	253	51	298
CRW_00535	-	0.31	0.33	0.29	108	898098	285	65	199	21	220
CRW_00538	-	0.31	0.32	0.30	97	811851	252	60	167	25	203
CRW_00542	-	0.19	0.21	0.17	66	994368	379	68	253	58	251
CRW_00545	-	0.29	0.32	0.26	61	1343744	400	54	121	225	132
CRW_00547	-	0.49	0.48	0.51	414	4278463	446	56	342	48	449
CRW_00579	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00583	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00594	-	0.26	0.27	0.25	106	1028472	348	49	268	31	289
CRW_00596	-	0.21	0.21	0.22	80	1024224	314	41	251	22	306
CRW_00597	-	0.24	0.25	0.24	103	1200042	380	41	289	50	308
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.35	186	1665698	397	77	264	56	305
CRW_00599	-	0.37	0.37	0.36	203	3754613	734	62	292	380	343
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.86	0.85	0.87	78	559063	257	2	10	245	14
CRW_00607	-	0.67	0.66	0.67	51	536054	291	10	15	266	26
CRW_00615	-	0.83	0.84	0.82	69	553794	281	5	10	266	13
CRW_00616	-	0.77	0.75	0.79	82	1699142	451	2	20	429	28
CRW_00617	-	0.45	0.50	0.40	32	426346	256	12	36	208	32
CRW_00678	-	0.45	0.46	0.43	56	666306	280	17	56	207	65
CRW_00680	-	0.59	0.60	0.57	73	516509	238	11	43	184	49
CRW_00683	-	0.40	0.45	0.36	61	460150	213	35	74	104	74
CRW_00684	-	0.49	0.49	0.49	66	612037	256	19	49	188	69
CRW_00702	-	0.68	0.81	0.58	61	357329	217	33	12	172	14
CRW_00704	-	0.84	0.85	0.83	80	386664	204	7	9	188	14
CRW_00705	-	0.37	0.43	0.32	37	1461081	491	29	48	414	49
CRW_00706	-	0.55	0.59	0.51	35	695541	358	15	19	324	24
CRW_00708	-	0.55	0.64	0.48	42	3457047	800	27	19	754	24
CRW_00709	-	0.03	0.04	0.03	3	1728763	593	28	76	489	82
CRW_00710	-	0.62	0.67	0.58	76	1040273	392	21	33	338	38
CRW_00711	-	0.35	0.38	0.32	47	2318636	641	31	67	543	77
CRW_00712	-	0.68	0.71	0.64	77	952770	373	10	33	330	31
CRW_00713	-	0.75	0.74	0.75	75	731345	330	6	19	305	26
CRW_00723	-	0.53	0.54	0.52	40	1583233	492	12	25	455	34
CRW_00724	-	0.70	0.74	0.65	131	3231952	604	22	48	534	45
CRW_00725	-	0.43	0.49	0.38	86	1957004	468	56	85	327	88
CRW_00726	-	0.69	0.72	0.67	135	3378498	648	24	43	581	52
CRW_00730	-	0.55	0.58	0.53	94	338897	161	19	66	76	67
CRW_00732	-	0.42	0.55	0.32	64	3401938	792	74	60	658	53
CRW_00734	-	0.22	0.30	0.17	33	536969	252	96	68	88	77
CRW_00735	-	0.33	0.42	0.26	51	677834	301	68	77	156	70
CRW_00740	-	0.04	0.05	0.03	6	489370	304	70	109	125	107
CRW_00742	-	0.67	0.68	0.66	115	1723122	475	19	40	416	53
CRW_00743	-	0.53	0.63	0.44	94	2224782	591	71	48	472	55
CRW_00744	-	0.66	0.65	0.67	120	3433331	757	10	49	698	66
CRW_00745	-	0.52	0.60	0.44	92	1343773	398	41	74	283	62
CRW_00746	-	0.50	0.50	0.49	110	550501	193	24	90	79	109
CRW_00747	-	0.27	0.29	0.26	54	3722146	782	34	122	626	134
CRW_00749	-	0.39	0.44	0.35	78	3058881	680	38	104	538	101
CRW_00750	-	0.53	0.59	0.48	94	709642	281	30	70	181	66
CRW_00751	-	0.84	0.83	0.85	148	489380	166	4	23	139	30
CRW_00752	-	0.36	0.42	0.31	78	2975326	676	57	119	500	106
CRW_00753	-	0.21	0.21	0.21	38	489372	233	35	110	88	140
CRW_00757	-	0.13	0.15	0.12	19	415258	251	40	99	112	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	155	1640275	399	64	272	63	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	146	1638444	427	68	297	62	340
CRW_00761	-	0.20	0.21	0.19	101	2863890	706	82	348	276	373
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215575	395	47	308	40	356
CRW_00765	-	0.40	0.40	0.39	103	452412	172	38	123	11	154
CRW_00766	-	0.31	0.28	0.33	68	440187	154	23	113	18	172
CRW_00768	-	0.44	0.43	0.46	111	471666	155	19	110	26	148
CRW_00769	-	0.54	0.53	0.56	134	451485	127	28	78	21	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	90	945593	335	34	283	18	314
CRW_00773	-	0.53	0.53	0.54	136	451474	132	27	88	17	123
CRW_00774	-	0.36	0.35	0.38	91	488326	168	24	125	19	172
CRW_00777	-	0.38	0.39	0.38	118	719086	236	39	157	40	186
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.28	112	1201627	335	46	240	49	272
CRW_00779	-	0.27	0.26	0.28	110	1031366	308	43	247	18	312
CRW_00780	-	0.26	0.23	0.30	58	475606	150	17	119	14	197
CRW_00781	-	0.25	0.26	0.24	115	1978584	476	59	297	120	335
CRW_00783	-	0.28	0.27	0.30	71	453388	180	22	147	11	188
CRW_00784	-	0.25	0.24	0.27	63	456254	187	31	142	14	199
CRW_00785	-	0.27	0.26	0.28	66	452441	182	20	149	13	187
CRW_00786	-	0.36	0.36	0.36	160	1946908	448	34	249	165	290
CRW_00787	-	0.44	0.42	0.46	129	646674	179	14	136	29	177
CRW_00788	-	0.30	0.29	0.31	106	1758408	447	46	190	211	255
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00790	-	0.22	0.23	0.22	101	1803599	462	50	300	112	346
CRW_00792	-	0.30	0.30	0.30	114	1581151	434	34	232	168	269
CRW_00793	-	0.43	0.42	0.44	157	1048718	264	42	159	63	220
CRW_00794	-	0.28	0.28	0.28	68	434537	200	16	157	27	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00796	-	0.30	0.29	0.32	67	384793	164	13	130	21	168
CRW_00797	-	0.38	0.38	0.38	131	692904	250	35	183	32	211
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.49	0.54	231	1401550	267	31	163	73	239
CRW_00801	-	0.42	0.42	0.41	105	438262	167	37	112	18	144
CRW_00802	-	0.20	0.19	0.21	48	460092	200	26	154	20	205
CRW_00803	-	0.23	0.23	0.22	105	1952798	456	67	306	83	344
CRW_00804	-	0.31	0.32	0.30	129	1420032	412	48	246	118	274
CRW_00806	-	0.26	0.26	0.26	115	1913512	439	51	268	120	334
CRW_00807	-	0.41	0.40	0.43	158	1391579	332	29	180	123	240
CRW_00808	-	0.27	0.28	0.26	101	1301298	415	57	235	123	255
CRW_00813	-	0.31	0.35	0.27	47	530793	264	47	78	139	86
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01134	-	0.34	0.33	0.36	139	964971	255	34	211	10	288
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01168	-	0.37	0.37	0.38	152	900751	269	37	213	19	259
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01186	-	0.29	0.28	0.29	109	836194	279	38	230	11	277
CRW_01188	-	0.17	0.17	0.17	66	837477	327	51	271	5	327
CRW_01189	-	0.22	0.22	0.23	85	862271	302	50	235	17	307
CRW_01214	-	0.25	0.23	0.27	93	931946	265	38	218	9	312
CRW_01222	-	0.23	0.23	0.23	92	912876	316	64	244	8	305
CRW_01224	-	0.35	0.34	0.37	135	912911	241	26	204	11	262
CRW_01239	-	0.25	0.26	0.25	98	840067	309	37	254	18	284
CRW_01250	-	0.35	0.34	0.36	127	781522	241	33	193	15	251
CRW_01260	-	0.15	0.15	0.15	57	912898	326	53	268	5	336
CRW_01266	-	0.26	0.26	0.26	100	818174	298	49	237	12	281
CRW_01271	-	0.35	0.35	0.35	134	827163	253	42	202	9	247
CRW_01275	-	0.39	0.39	0.40	167	1082236	283	47	206	30	265
CRW_01283	-	0.25	0.24	0.26	99	963588	291	41	238	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	182	1693209	381	68	261	52	333
CRW_01314	-	0.28	0.27	0.30	110	937397	272	35	223	14	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977480	279	40	223	16	276
CRW_01344	-	0.29	0.28	0.30	103	791562	258	40	206	12	263
CRW_01456	-	0.29	0.29	0.29	246	4240490	619	74	518	27	605
PDB_00187	-	0.34	0.35	0.32	254	3746167	591	106	426	59	462
PDB_00401	-	0.42	0.39	0.44	372	3996537	504	60	409	35	581
PDB_00409	-	0.31	0.37	0.27	91	688208	326	81	171	74	154
PDB_00609	-	0.36	0.37	0.35	292	4156461	600	103	430	67	498
PDB_00644	-	0.36	0.36	0.36	299	4328322	598	106	426	66	521
PDB_00675	-	0.44	0.41	0.47	395	4167994	482	50	389	43	579
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00704	-	0.40	0.37	0.42	360	4249217	528	57	436	35	613
PDB_00805	-	0.61	0.59	0.64	177	467751	133	13	87	33	125
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_00947	-	0.65	0.64	0.65	478	4310784	418	59	195	164	271
PDB_00993	-	0.34	0.34	0.34	271	3923394	589	94	442	53	531
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01089	-	0.50	0.50	0.50	376	4053374	484	89	289	106	383
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01140	-	0.55	0.52	0.57	485	4176644	420	59	307	54	445
PDB_01261	-	0.71	0.64	0.78	214	467754	64	0	60	4	122
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]