CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MaxExpect		UNAFold
MCC	0.407	>	0.379
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017	>	0.376 ± 0.017
Sensitivity	0.396	>	0.379
Positive Predictive Value	0.418	>	0.379
Total TP	45809	>	43868
Total TN	437653518	>	437647307
Total FP	84964	<	92813
Total FP CONTRA	10114	<	12413
Total FP INCONS	53548	<	59401
Total FP COMP	21302	>	20999
Total FN	69828	<	71769
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MaxExpect and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MaxExpect and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MaxExpect and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MaxExpect and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MaxExpect and UNAFold).

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Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	45809
Total TN	437653518
Total FP	84964
Total FP CONTRA	10114
Total FP INCONS	53548
Total FP COMP	21302
Total FN	69828

Total Scores
MCC	0.407
Average MCC ± 95% Confidence Intervals	0.406 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.418
Nr of predictions	273

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2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.59	0.56	0.61	117	3173749	620	6	68	546	92
CRW_00002	-	0.63	0.57	0.70	151	408844	107	5	60	42	113
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.71	0.70	0.71	320	1085152	169	17	112	40	138
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.66	310	1141844	191	28	134	29	164
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.48	0.57	226	1170816	189	20	153	16	244
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	192	1107377	261	23	224	14	264
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.54	232	1172316	212	16	182	14	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1181497	266	35	218	13	273
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	197	1108869	251	32	207	12	260
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.52	220	1178453	229	21	186	22	245
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	193	1135835	265	20	230	15	270
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	254	1201566	230	30	175	25	222
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.46	202	1152479	257	24	216	17	264
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	259	1179986	190	37	134	19	212
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.46	192	1190777	241	18	209	14	276
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.26	0.26	0.27	115	1082230	324	28	283	13	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	221	1178440	239	26	193	20	252
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1207782	238	32	188	18	242
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	263	1198489	199	15	159	25	215
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1105895	262	25	222	15	267
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.51	248	1218656	263	29	208	26	236
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	241	1198458	244	44	183	17	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.39	0.41	182	1192293	285	38	227	20	286
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.55	244	1111842	223	23	177	23	211
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	146	1122327	292	34	244	14	316
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.42	0.40	0.45	180	1085197	237	27	197	13	266
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1114831	186	26	141	19	184
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	148	1110390	267	37	220	10	305
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.39	0.36	0.42	160	1129876	240	22	198	20	290
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.56	244	1179977	213	26	169	18	220
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1117836	279	37	230	12	296
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	270	1144891	201	25	155	21	194
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	146	1015622	282	41	216	25	286
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.38	0.35	0.41	159	1131368	249	21	212	16	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	246	1117835	199	26	153	20	212
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	218	1189213	245	32	190	23	258
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	150	1123843	269	39	218	12	311
CRW_00294	-	0.35	0.37	0.33	217	2620253	526	104	331	91	369
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.24	123	1620380	438	79	318	41	371
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	180	1761991	393	60	272	61	339
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445370	462	62	332	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	157	1805427	422	63	303	56	364
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	205	1627618	330	55	232	43	297
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	172	1988480	429	65	298	66	345
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.18	0.17	87	1769512	473	87	335	51	390
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.35	166	1892006	380	65	248	67	348
CRW_00338	-	0.17	0.19	0.16	74	1052974	390	83	295	12	321
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	174	1586388	361	52	257	52	324
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	361	62	259	40	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.33	151	1615043	353	51	258	44	352
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	206	1674869	336	56	234	46	301
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	134	1579236	421	78	305	38	348
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1640256	403	77	282	44	355
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.40	0.39	0.42	192	1611452	316	45	221	50	304
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	139	1625798	414	78	291	45	359
CRW_00374	-	0.34	0.32	0.35	178	2182499	406	42	286	78	372
CRW_00375	-	0.31	0.31	0.31	166	2298906	437	63	305	69	375
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.44	0.43	234	2126414	384	57	248	79	300
CRW_00381	-	0.34	0.33	0.35	185	2303200	450	58	288	104	372
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750712	440	78	328	34	377
CRW_00400	-	0.29	0.29	0.29	144	2677952	564	62	297	205	350
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	144	1606062	415	58	264	93	320
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	163	1615021	361	68	251	42	333
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.30	153	1665712	421	60	300	61	342
CRW_00417	-	0.36	0.34	0.39	88	458179	146	24	112	10	174
CRW_00418	-	0.18	0.16	0.20	42	441120	176	15	153	8	218
CRW_00419	-	0.20	0.17	0.22	46	463957	168	14	149	5	219
CRW_00421	-	0.48	0.45	0.52	119	462976	126	15	93	18	147
CRW_00422	-	0.40	0.39	0.42	102	455291	162	21	121	20	161
CRW_00424	-	0.42	0.39	0.44	142	789075	201	18	161	22	221
CRW_00426	-	0.32	0.31	0.34	83	457199	173	24	140	9	182
CRW_00427	-	0.26	0.24	0.28	62	454361	174	27	131	16	199
CRW_00428	-	0.37	0.35	0.39	91	465860	158	24	120	14	169
CRW_00430	-	0.37	0.30	0.46	79	456317	101	12	82	7	187
CRW_00433	-	0.29	0.24	0.35	64	467846	124	10	108	6	199
CRW_00434	-	0.46	0.42	0.51	111	457227	117	19	89	9	152
CRW_00435	-	0.41	0.37	0.46	97	451515	119	8	105	6	168
CRW_00437	-	0.33	0.27	0.40	70	456316	108	16	88	4	190
CRW_00438	-	0.45	0.41	0.49	111	454354	125	17	99	9	157
CRW_00441	-	0.26	0.21	0.31	56	454399	130	14	112	4	206
CRW_00442	-	0.38	0.35	0.41	92	453401	144	32	103	9	169
CRW_00443	-	0.29	0.25	0.34	65	456299	140	18	108	14	195
CRW_00444	-	0.30	0.29	0.33	75	459131	162	23	132	7	188
CRW_00445	-	0.32	0.29	0.34	78	458175	161	28	122	11	187
CRW_00446	-	0.30	0.28	0.32	74	468762	173	19	141	13	191
CRW_00447	-	0.35	0.33	0.38	86	452448	159	15	127	17	174
CRW_00448	-	0.36	0.31	0.40	82	457243	134	16	105	13	179
CRW_00449	-	0.38	0.35	0.40	91	444871	140	22	112	6	169
CRW_00450	-	0.36	0.31	0.43	80	458217	118	6	100	12	182
CRW_00451	-	0.26	0.25	0.28	65	457212	182	22	147	13	199
CRW_00452	-	0.29	0.26	0.32	67	453421	158	17	123	18	195
CRW_00453	-	0.32	0.30	0.35	78	452450	155	25	123	7	183
CRW_00454	-	0.18	0.18	0.18	78	1730297	469	58	297	114	357
CRW_00456	-	0.37	0.32	0.44	84	470743	119	21	87	11	181
CRW_00457	-	0.42	0.39	0.46	103	467805	134	17	103	14	161
CRW_00458	-	0.49	0.46	0.52	122	464894	129	22	92	15	142
CRW_00459	-	0.37	0.34	0.40	90	462015	154	22	114	18	173
CRW_00460	-	0.33	0.33	0.33	180	1972551	449	47	313	89	364
CRW_00462	-	0.39	0.33	0.46	86	458215	114	9	93	12	175
CRW_00463	-	0.36	0.35	0.38	88	445809	151	25	118	8	166
CRW_00464	-	0.27	0.24	0.32	63	462041	145	14	123	8	201
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	188	25	142	21	185
CRW_00468	-	0.55	0.53	0.57	449	4290203	371	51	282	38	406
CRW_00471	-	0.43	0.42	0.44	364	4211430	482	62	397	23	507
CRW_00474	-	0.55	0.54	0.56	453	3976798	398	62	297	39	383
CRW_00476	-	0.45	0.43	0.46	382	4278441	484	69	383	32	497
CRW_00478	-	0.55	0.54	0.56	462	4150691	398	61	307	30	401
CRW_00487	-	0.54	0.52	0.56	454	4223053	398	58	306	34	418
CRW_00488	-	0.48	0.45	0.50	399	4325415	430	55	342	33	487
CRW_00490	-	0.36	0.36	0.36	312	4144896	585	82	470	33	550
CRW_00495	-	0.46	0.45	0.48	387	4205642	448	49	372	27	471
CRW_00496	-	0.48	0.46	0.50	399	4194050	444	43	364	37	467
CRW_00497	-	0.48	0.48	0.48	398	4402195	480	74	361	45	424
CRW_00499	-	0.56	0.54	0.59	477	4372592	365	45	289	31	406
CRW_00500	-	0.46	0.45	0.47	394	4205613	469	69	374	26	474
CRW_00501	-	0.44	0.43	0.45	369	4284303	483	66	390	27	499
CRW_00502	-	0.65	0.63	0.67	550	4296030	306	39	227	40	322
CRW_00503	-	0.45	0.43	0.46	374	4252172	465	61	379	25	493
CRW_00507	-	0.36	0.35	0.38	299	4173820	506	54	432	20	566
CRW_00509	-	0.49	0.46	0.51	397	4182506	409	43	332	34	470
CRW_00511	-	0.46	0.44	0.48	380	4107613	445	39	379	27	476
CRW_00512	-	0.58	0.55	0.61	449	3814963	314	52	239	23	370
CRW_00516	-	0.62	0.58	0.66	512	4272654	300	28	232	40	364
CRW_00518	-	0.36	0.34	0.38	298	4357837	515	67	426	22	586
CRW_00519	-	0.71	0.70	0.72	586	4246346	282	32	191	59	246
CRW_00520	-	0.53	0.52	0.54	438	4208541	405	63	309	33	412
CRW_00521	-	0.45	0.42	0.49	351	4136414	392	52	309	31	493
CRW_00522	-	0.28	0.27	0.29	213	3642919	543	80	438	25	569
CRW_00525	-	0.27	0.28	0.26	227	4058941	698	74	583	41	586
CRW_00530	-	0.33	0.34	0.32	90	534810	205	54	141	10	178
CRW_00532	-	0.18	0.18	0.17	49	579145	242	61	171	10	216
CRW_00533	-	0.39	0.38	0.41	83	453424	169	20	101	48	136
CRW_00534	-	0.40	0.40	0.41	191	1832193	313	53	218	42	292
CRW_00535	-	0.31	0.31	0.30	102	898131	252	53	184	15	226
CRW_00538	-	0.34	0.30	0.38	91	811934	171	43	107	21	209
CRW_00542	-	0.20	0.21	0.19	65	994419	320	59	212	49	252
CRW_00545	-	0.26	0.26	0.25	50	1343782	354	35	113	206	143
CRW_00547	-	0.50	0.48	0.52	416	4278470	423	41	348	34	447
CRW_00579	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00583	-	0.51	0.48	0.53	454	4290129	422	51	351	20	483
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.34	136	1094057	285	28	239	18	309
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.43	169	1119363	246	23	201	22	283
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	194	1098463	264	36	210	18	252
CRW_00594	-	0.26	0.27	0.25	107	1028468	350	47	273	30	288
CRW_00596	-	0.22	0.23	0.22	87	1024209	323	42	258	23	299
CRW_00597	-	0.25	0.26	0.25	105	1200059	356	39	272	45	306
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.38	0.39	0.38	190	1665724	360	63	248	49	301
CRW_00599	-	0.37	0.37	0.37	203	3754627	701	59	281	361	343
CRW_00604	-	0.90	0.88	0.93	71	411702	185	1	4	180	10
CRW_00606	-	0.87	0.84	0.90	77	559067	237	0	9	228	15
CRW_00607	-	0.66	0.65	0.67	50	536055	254	9	16	229	27
CRW_00615	-	0.70	0.72	0.68	59	553791	259	11	17	231	23
CRW_00616	-	0.73	0.67	0.80	74	1699153	375	2	17	356	36
CRW_00617	-	0.48	0.48	0.48	31	426362	233	10	23	200	33
CRW_00678	-	0.45	0.45	0.44	55	666309	273	12	59	202	66
CRW_00680	-	0.60	0.61	0.60	74	516512	219	10	40	169	48
CRW_00683	-	0.30	0.33	0.27	44	460156	239	29	91	119	91
CRW_00684	-	0.45	0.45	0.46	61	612037	256	19	54	183	74
CRW_00702	-	0.70	0.76	0.64	57	357346	172	24	8	140	18
CRW_00704	-	0.87	0.86	0.87	81	386667	187	2	10	175	13
CRW_00705	-	0.38	0.43	0.33	37	1461084	448	26	48	374	49
CRW_00706	-	0.55	0.59	0.51	35	695541	326	15	19	292	24
CRW_00708	-	0.59	0.64	0.55	42	3457059	696	16	18	662	24
CRW_00709	-	0.03	0.04	0.03	3	1728765	540	24	78	438	82
CRW_00710	-	0.63	0.66	0.60	75	1040278	345	22	28	295	39
CRW_00711	-	0.37	0.38	0.36	47	2318649	581	31	54	496	77
CRW_00712	-	0.70	0.70	0.69	76	952780	350	4	30	316	32
CRW_00713	-	0.81	0.74	0.88	75	731360	279	2	8	269	26
CRW_00723	-	0.57	0.51	0.62	38	1583249	453	4	19	430	36
CRW_00724	-	0.71	0.73	0.69	129	3231967	557	17	40	500	47
CRW_00725	-	0.46	0.51	0.41	89	1957015	447	47	80	320	85
CRW_00726	-	0.70	0.73	0.67	136	3378498	595	24	42	529	51
CRW_00730	-	0.56	0.58	0.53	94	338898	165	19	65	81	67
CRW_00732	-	0.41	0.50	0.33	59	3401958	678	66	53	559	58
CRW_00734	-	0.20	0.25	0.16	28	536995	212	74	69	69	82
CRW_00735	-	0.36	0.42	0.30	51	677861	247	51	67	129	70
CRW_00740	-	0.04	0.05	0.04	6	489396	256	54	99	103	107
CRW_00742	-	0.63	0.59	0.67	99	1723149	427	6	42	379	69
CRW_00743	-	0.49	0.56	0.42	83	2224799	533	67	46	420	66
CRW_00744	-	0.68	0.68	0.69	126	3433328	692	6	50	636	60
CRW_00745	-	0.51	0.59	0.44	91	1343774	378	41	74	263	63
CRW_00746	-	0.49	0.50	0.48	109	550498	191	23	95	73	110
CRW_00747	-	0.28	0.29	0.26	54	3722151	719	32	119	568	134
CRW_00749	-	0.39	0.42	0.36	75	3058893	640	34	99	507	104
CRW_00750	-	0.53	0.57	0.49	91	709652	244	24	69	151	69
CRW_00751	-	0.84	0.83	0.86	148	489382	135	3	22	110	30
CRW_00752	-	0.38	0.43	0.33	80	2975338	651	47	115	489	104
CRW_00753	-	0.22	0.21	0.22	38	489385	207	31	101	75	140
CRW_00757	-	0.14	0.15	0.13	19	415264	235	35	98	102	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.34	155	1640308	356	41	262	53	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636649	407	59	286	62	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	143	1638449	415	65	298	52	343
CRW_00761	-	0.21	0.22	0.20	102	2863911	677	78	330	269	372
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.19	0.21	86	1215616	348	38	280	30	360
CRW_00765	-	0.40	0.37	0.43	95	452456	133	23	102	8	162
CRW_00766	-	0.35	0.30	0.40	72	440211	123	11	97	15	168
CRW_00768	-	0.43	0.40	0.46	103	471680	146	13	110	23	156
CRW_00769	-	0.56	0.54	0.59	135	451495	113	22	73	18	117
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.23	85	945632	297	29	254	14	319
CRW_00773	-	0.52	0.48	0.55	125	451499	119	17	84	18	134
CRW_00774	-	0.35	0.32	0.38	84	488343	157	18	121	18	179
CRW_00777	-	0.38	0.38	0.39	116	719100	221	34	150	37	188
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	112	1201643	316	45	225	46	272
CRW_00779	-	0.27	0.26	0.29	108	1031396	274	32	230	12	314
CRW_00780	-	0.27	0.24	0.30	61	475598	155	14	127	14	194
CRW_00781	-	0.26	0.26	0.25	118	1978581	470	59	297	114	332
CRW_00783	-	0.29	0.26	0.32	68	453413	156	11	136	9	191
CRW_00784	-	0.27	0.25	0.30	65	456271	172	27	127	18	197
CRW_00785	-	0.26	0.23	0.30	58	452481	145	20	117	8	195
CRW_00786	-	0.37	0.36	0.39	164	1946926	412	27	234	151	286
CRW_00787	-	0.44	0.40	0.47	123	646693	160	13	124	23	183
CRW_00788	-	0.34	0.31	0.38	111	1758454	398	29	156	213	250
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.38	165	1137350	293	39	232	22	282
CRW_00790	-	0.22	0.22	0.22	97	1803609	455	45	299	111	350
CRW_00792	-	0.30	0.28	0.32	107	1581193	378	31	200	147	276
CRW_00793	-	0.47	0.44	0.49	166	1048740	227	34	136	57	211
CRW_00794	-	0.29	0.28	0.31	68	434558	174	10	142	22	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	138	1152523	307	34	226	47	256
CRW_00796	-	0.29	0.27	0.32	64	384801	159	15	123	21	171
CRW_00797	-	0.39	0.38	0.41	130	692935	213	23	165	25	212
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	239	1401570	232	20	146	66	231
CRW_00801	-	0.39	0.36	0.42	90	438301	137	25	100	12	159
CRW_00802	-	0.20	0.18	0.22	45	460113	173	20	142	11	208
CRW_00803	-	0.24	0.25	0.23	111	1952785	462	64	316	82	338
CRW_00804	-	0.33	0.33	0.34	131	1420069	350	33	222	95	272
CRW_00806	-	0.27	0.27	0.27	122	1913491	446	43	290	113	327
CRW_00807	-	0.43	0.40	0.46	161	1391596	295	24	165	106	237
CRW_00808	-	0.27	0.27	0.27	97	1301332	370	49	213	108	259
CRW_00813	-	0.28	0.31	0.26	41	530808	255	40	76	139	92
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	271	1117802	215	14	173	28	199
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1135837	260	32	212	16	267
CRW_01134	-	0.37	0.35	0.40	148	964986	231	28	193	10	279
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1606020	397	56	301	40	352
CRW_01168	-	0.39	0.38	0.39	156	900758	258	36	203	19	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	167	1593511	375	57	270	48	339
CRW_01186	-	0.29	0.28	0.30	108	836211	262	31	221	10	278
CRW_01188	-	0.17	0.17	0.17	67	837468	337	52	278	7	326
CRW_01189	-	0.21	0.20	0.22	80	862278	296	42	241	13	312
CRW_01214	-	0.26	0.24	0.28	96	931948	260	36	215	9	309
CRW_01222	-	0.24	0.24	0.24	96	912884	300	60	236	4	301
CRW_01224	-	0.36	0.34	0.37	134	912918	235	31	193	11	263
CRW_01239	-	0.26	0.26	0.27	98	840090	286	37	231	18	284
CRW_01250	-	0.34	0.31	0.38	118	781561	210	24	172	14	260
CRW_01260	-	0.16	0.15	0.17	60	912929	292	42	245	5	333
CRW_01266	-	0.26	0.27	0.26	101	818174	296	45	240	11	280
CRW_01271	-	0.36	0.36	0.36	137	827165	249	36	203	10	244
CRW_01275	-	0.39	0.38	0.40	164	1082246	265	39	207	19	268
CRW_01283	-	0.26	0.24	0.28	99	963611	268	33	223	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.35	177	1693219	370	60	264	46	338
CRW_01314	-	0.30	0.29	0.32	116	937404	259	31	214	14	291
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.35	0.38	154	977498	261	31	218	12	280
CRW_01344	-	0.31	0.29	0.33	106	791590	228	33	182	13	260
CRW_01456	-	0.30	0.30	0.30	252	4240491	607	61	524	22	599
PDB_00187	-	0.34	0.36	0.33	259	3746158	603	110	426	67	457
PDB_00401	-	0.43	0.39	0.46	376	3996569	461	47	386	28	577
PDB_00409	-	0.32	0.37	0.27	91	688216	320	75	169	76	154
PDB_00609	-	0.37	0.38	0.35	298	4156445	608	103	440	65	492
PDB_00644	-	0.37	0.38	0.37	309	4328311	599	100	433	66	511
PDB_00675	-	0.45	0.41	0.50	400	4168024	439	38	366	35	574
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.62	259	1073427	187	20	139	28	236
PDB_00704	-	0.39	0.37	0.43	357	4249230	517	51	432	34	616
PDB_00805	-	0.62	0.59	0.65	178	467755	124	14	81	29	124
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	298	1500283	247	21	176	50	237
PDB_00947	-	0.64	0.64	0.65	476	4310786	416	50	204	162	273
PDB_00993	-	0.35	0.35	0.34	284	3923374	594	93	450	51	518
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.35	176	1470965	353	46	283	24	371
PDB_01089	-	0.51	0.51	0.51	384	4053378	468	79	287	102	375
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.60	0.67	337	1606027	197	18	146	33	225
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.60	289	1433488	229	24	170	35	251
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.46	211	1204672	264	28	217	19	316
PDB_01140	-	0.55	0.53	0.57	489	4176638	416	49	319	48	441
PDB_01261	-	0.74	0.65	0.85	218	467773	41	0	37	4	118
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.46	211	1117804	273	31	214	28	280

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	43868
Total TN	437647307
Total FP	92813
Total FP CONTRA	12413
Total FP INCONS	59401
Total FP COMP	20999
Total FN	71769

Total Scores
MCC	0.379
Average MCC ± 95% Confidence Intervals	0.376 ± 0.017
Sensitivity	0.379
Positive Predictive Value	0.379
Nr of predictions	273

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.45	0.44	0.46	93	3173737	661	15	95	551	116
CRW_00002	-	0.55	0.54	0.56	143	408803	127	31	83	13	121
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.25	0.24	0.25	103	1015621	323	37	264	22	329
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.43	184	1123823	255	41	202	12	277
CRW_00294	-	0.31	0.33	0.29	191	2620252	546	107	355	84	395
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00338	-	0.15	0.16	0.14	64	1052953	413	75	334	4	331
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00374	-	0.44	0.44	0.44	244	2182449	395	57	255	83	306
CRW_00375	-	0.28	0.29	0.27	158	2298864	499	77	341	81	383
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00381	-	0.30	0.31	0.30	174	2303144	499	73	340	86	383
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00400	-	0.19	0.20	0.18	98	2677906	616	88	363	165	396
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00417	-	0.39	0.38	0.40	99	458154	161	21	129	11	163
CRW_00418	-	0.22	0.20	0.24	52	441115	174	21	142	11	208
CRW_00419	-	0.20	0.18	0.21	49	463930	194	17	170	7	216
CRW_00421	-	0.31	0.30	0.33	79	462964	173	28	132	13	187
CRW_00422	-	0.37	0.36	0.38	95	455287	170	24	129	17	168
CRW_00424	-	0.38	0.39	0.38	140	789031	251	22	203	26	223
CRW_00426	-	0.34	0.33	0.35	88	457193	175	23	142	10	177
CRW_00427	-	0.21	0.21	0.22	54	454337	205	33	157	15	207
CRW_00428	-	0.38	0.38	0.38	98	465840	170	32	125	13	162
CRW_00430	-	0.45	0.42	0.49	112	456262	128	20	96	12	154
CRW_00433	-	0.29	0.26	0.32	68	467817	148	21	122	5	195
CRW_00434	-	0.31	0.29	0.33	75	457220	157	19	132	6	188
CRW_00435	-	0.45	0.42	0.49	110	451500	126	9	106	11	155
CRW_00437	-	0.21	0.21	0.22	54	456247	191	23	166	2	206
CRW_00438	-	0.34	0.32	0.37	87	454343	161	16	135	10	181
CRW_00441	-	0.17	0.16	0.18	42	454353	190	32	154	4	220
CRW_00442	-	0.38	0.36	0.40	94	453393	149	25	116	8	167
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00444	-	0.30	0.29	0.32	76	459122	172	24	139	9	187
CRW_00445	-	0.30	0.28	0.33	75	458173	164	23	132	9	190
CRW_00446	-	0.36	0.33	0.38	88	468765	157	17	126	14	177
CRW_00447	-	0.33	0.32	0.35	82	452443	167	16	135	16	178
CRW_00448	-	0.34	0.33	0.36	85	457211	168	28	122	18	176
CRW_00449	-	0.15	0.15	0.16	38	444860	198	34	164	0	222
CRW_00450	-	0.34	0.32	0.36	83	458172	162	19	129	14	179
CRW_00451	-	0.24	0.22	0.26	59	457222	181	21	144	16	205
CRW_00452	-	0.29	0.26	0.31	69	453407	169	26	126	17	193
CRW_00453	-	0.23	0.21	0.24	56	452447	180	35	138	7	205
CRW_00454	-	0.16	0.16	0.17	69	1730315	473	57	289	127	366
CRW_00456	-	0.44	0.41	0.47	108	470706	137	19	102	16	157
CRW_00457	-	0.38	0.36	0.40	95	467788	159	28	117	14	169
CRW_00458	-	0.46	0.44	0.48	115	464891	141	21	103	17	149
CRW_00459	-	0.55	0.51	0.58	135	462008	117	16	82	19	128
CRW_00460	-	0.30	0.30	0.30	161	1972561	446	49	320	77	383
CRW_00462	-	0.18	0.16	0.19	43	458180	198	21	159	18	218
CRW_00463	-	0.39	0.38	0.40	97	445799	154	21	123	10	157
CRW_00464	-	0.38	0.35	0.42	92	462021	139	14	114	11	172
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00468	-	0.48	0.48	0.47	408	4290123	488	76	378	34	447
CRW_00471	-	0.52	0.51	0.53	445	4211420	422	70	318	34	426
CRW_00474	-	0.45	0.44	0.45	371	3976793	477	67	379	31	465
CRW_00476	-	0.37	0.37	0.37	323	4278391	590	78	483	29	556
CRW_00478	-	0.52	0.52	0.53	445	4150683	417	70	323	24	418
CRW_00487	-	0.48	0.47	0.49	409	4223041	450	72	349	29	463
CRW_00488	-	0.36	0.36	0.37	318	4325352	560	78	463	19	568
CRW_00490	-	0.40	0.39	0.40	339	4144915	541	70	436	35	523
CRW_00495	-	0.38	0.37	0.38	319	4205611	549	60	460	29	539
CRW_00496	-	0.42	0.41	0.43	354	4194028	503	59	415	29	512
CRW_00497	-	0.40	0.40	0.40	329	4402212	539	70	417	52	493
CRW_00499	-	0.40	0.39	0.40	343	4372553	528	65	442	21	540
CRW_00500	-	0.45	0.44	0.45	385	4205593	497	68	404	25	483
CRW_00501	-	0.46	0.46	0.47	399	4284272	487	77	380	30	469
CRW_00502	-	0.52	0.52	0.53	456	4295979	445	73	338	34	416
CRW_00503	-	0.41	0.41	0.42	354	4252133	529	73	426	30	513
CRW_00507	-	0.32	0.32	0.32	278	4173747	595	64	516	15	587
CRW_00509	-	0.46	0.45	0.48	392	4182454	467	68	364	35	475
CRW_00511	-	0.37	0.36	0.37	309	4107578	542	55	469	18	547
CRW_00512	-	0.50	0.50	0.51	409	3814897	424	61	336	27	410
CRW_00516	-	0.51	0.51	0.52	448	4272559	453	67	352	34	428
CRW_00518	-	0.25	0.25	0.26	220	4357775	642	74	559	9	664
CRW_00519	-	0.55	0.55	0.54	461	4246298	452	57	339	56	371
CRW_00520	-	0.42	0.42	0.42	354	4208514	507	81	402	24	496
CRW_00521	-	0.32	0.31	0.32	265	4136305	581	77	479	25	579
CRW_00522	-	0.20	0.21	0.20	164	3642825	687	115	546	26	618
CRW_00525	-	0.30	0.31	0.28	254	4058917	690	83	571	36	559
CRW_00530	-	0.26	0.28	0.25	74	534802	233	55	164	14	194
CRW_00532	-	0.15	0.16	0.14	42	579121	281	61	202	18	223
CRW_00533	-	0.20	0.22	0.18	48	453354	262	61	165	36	171
CRW_00534	-	0.30	0.31	0.29	149	1832140	399	78	288	33	334
CRW_00535	-	0.26	0.28	0.25	91	898105	293	66	208	19	237
CRW_00538	-	0.19	0.20	0.18	59	811850	285	65	201	19	241
CRW_00542	-	0.20	0.23	0.18	72	994346	357	100	237	20	245
CRW_00545	-	0.19	0.21	0.17	40	1343749	405	57	134	214	153
CRW_00547	-	0.46	0.46	0.47	397	4278426	479	61	391	27	466
CRW_00579	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00583	-	0.45	0.44	0.47	413	4290101	485	60	411	14	524
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00594	-	0.23	0.24	0.22	94	1028460	369	47	294	28	301
CRW_00596	-	0.21	0.22	0.20	85	1024169	356	69	273	14	301
CRW_00597	-	0.24	0.25	0.23	101	1200045	369	48	281	40	310
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00599	-	0.35	0.36	0.34	195	3754588	700	77	310	313	351
CRW_00604	-	0.82	0.86	0.79	70	411689	188	10	9	169	11
CRW_00606	-	0.87	0.84	0.91	77	559068	251	0	8	243	15
CRW_00607	-	0.54	0.53	0.55	41	536056	268	10	23	235	36
CRW_00615	-	0.50	0.56	0.45	46	553776	279	21	35	223	36
CRW_00616	-	0.61	0.59	0.63	65	1699143	504	2	36	466	45
CRW_00617	-	0.41	0.45	0.38	29	426349	237	15	33	189	35
CRW_00678	-	0.41	0.45	0.37	55	666287	299	23	70	206	66
CRW_00680	-	0.32	0.36	0.28	44	516477	258	32	83	143	78
CRW_00683	-	0.50	0.50	0.49	68	460182	221	18	52	151	67
CRW_00684	-	0.35	0.37	0.32	50	612016	279	36	69	174	85
CRW_00702	-	0.57	0.64	0.51	48	357341	200	16	30	154	27
CRW_00704	-	0.80	0.79	0.82	74	386670	190	4	12	174	20
CRW_00705	-	0.29	0.37	0.22	32	1461052	464	50	61	353	54
CRW_00706	-	0.37	0.41	0.34	24	695539	343	11	36	296	35
CRW_00708	-	0.49	0.65	0.37	43	3457019	742	55	18	669	23
CRW_00709	-	0.23	0.22	0.24	19	1728790	569	8	53	508	66
CRW_00710	-	0.66	0.65	0.67	74	1040293	368	8	28	332	40
CRW_00711	-	0.28	0.30	0.26	37	2318636	603	35	73	495	87
CRW_00712	-	0.46	0.53	0.40	57	952749	364	30	54	280	51
CRW_00713	-	0.67	0.65	0.69	66	731349	298	5	25	268	35
CRW_00723	-	0.46	0.57	0.37	42	1583195	497	40	33	424	32
CRW_00724	-	0.57	0.62	0.52	109	3231945	615	22	77	516	67
CRW_00725	-	0.45	0.51	0.40	89	1957011	506	34	97	375	85
CRW_00726	-	0.66	0.67	0.65	125	3378509	627	20	46	561	62
CRW_00730	-	0.51	0.55	0.48	88	338891	172	28	69	75	73
CRW_00732	-	0.36	0.44	0.28	52	3401953	710	70	61	579	65
CRW_00734	-	0.19	0.25	0.15	27	536983	264	76	80	108	83
CRW_00735	-	0.26	0.37	0.18	45	677784	313	116	85	112	76
CRW_00740	-	0.01	0.02	0.01	2	489366	281	77	110	94	111
CRW_00742	-	0.42	0.49	0.36	83	1723063	498	56	94	348	85
CRW_00743	-	0.41	0.52	0.33	78	2224756	592	83	78	431	71
CRW_00744	-	0.71	0.78	0.65	145	3433288	702	37	40	625	41
CRW_00745	-	0.41	0.48	0.36	74	1343772	403	51	83	269	80
CRW_00746	-	0.55	0.58	0.52	128	550477	181	33	87	61	91
CRW_00747	-	0.16	0.18	0.15	34	3722125	790	49	148	593	154
CRW_00749	-	0.64	0.65	0.63	117	3058916	638	13	55	570	62
CRW_00750	-	0.39	0.44	0.35	70	709638	293	37	91	165	90
CRW_00751	-	0.59	0.63	0.54	113	489346	182	36	60	86	65
CRW_00752	-	0.34	0.41	0.28	76	2975313	664	68	123	473	108
CRW_00753	-	0.07	0.07	0.06	13	489343	289	36	163	90	165
CRW_00757	-	0.09	0.11	0.08	14	415240	259	54	108	97	112
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00761	-	0.20	0.21	0.19	98	2863901	663	82	340	241	376
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.29	0.27	0.30	122	1215612	330	26	260	44	324
CRW_00765	-	0.24	0.24	0.24	62	452416	208	36	162	10	195
CRW_00766	-	0.23	0.22	0.23	53	440165	188	28	145	15	187
CRW_00768	-	0.56	0.54	0.58	141	471663	124	14	88	22	118
CRW_00769	-	0.37	0.35	0.39	88	451499	151	24	114	13	164
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00773	-	0.47	0.47	0.48	121	451471	151	28	105	18	138
CRW_00774	-	0.34	0.32	0.37	85	488335	171	20	126	25	178
CRW_00777	-	0.29	0.29	0.29	88	719096	251	36	180	35	216
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	123	1201647	309	46	209	54	261
CRW_00779	-	0.29	0.28	0.29	120	1031355	310	39	252	19	302
CRW_00780	-	0.36	0.35	0.37	89	475561	163	24	126	13	166
CRW_00781	-	0.18	0.20	0.17	90	1978527	535	77	361	97	360
CRW_00783	-	0.35	0.34	0.36	87	453385	167	15	141	11	172
CRW_00784	-	0.34	0.33	0.36	86	456249	169	29	126	14	176
CRW_00785	-	0.30	0.29	0.32	73	452445	165	31	127	7	180
CRW_00786	-	0.41	0.42	0.41	187	1946898	430	36	230	164	263
CRW_00787	-	0.23	0.24	0.23	72	646633	257	40	208	9	234
CRW_00788	-	0.35	0.36	0.34	131	1758365	426	62	192	172	230
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00790	-	0.16	0.17	0.15	74	1803544	496	75	357	64	373
CRW_00792	-	0.24	0.26	0.23	99	1581092	444	81	259	104	284
CRW_00793	-	0.32	0.33	0.31	124	1048682	323	53	217	53	253
CRW_00794	-	0.23	0.23	0.23	56	434530	209	20	172	17	190
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00796	-	0.25	0.23	0.26	55	384793	177	24	131	22	180
CRW_00797	-	0.29	0.29	0.29	98	692914	265	38	203	24	244
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.51	0.51	0.52	238	1401519	271	33	185	53	232
CRW_00801	-	0.46	0.45	0.46	113	438272	150	28	103	19	136
CRW_00802	-	0.25	0.24	0.25	61	460079	192	36	144	12	192
CRW_00803	-	0.25	0.28	0.23	125	1952727	493	86	338	69	324
CRW_00804	-	0.34	0.34	0.33	137	1420043	397	43	232	122	266
CRW_00806	-	0.25	0.28	0.23	125	1913403	482	86	332	64	324
CRW_00807	-	0.25	0.26	0.25	102	1391535	411	56	253	102	296
CRW_00808	-	0.20	0.21	0.19	74	1301303	411	68	246	97	282
CRW_00813	-	0.17	0.20	0.14	27	530778	295	47	113	135	106
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01134	-	0.34	0.33	0.34	142	964943	281	42	228	11	285
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01168	-	0.33	0.33	0.33	136	900740	294	43	234	17	275
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01186	-	0.23	0.23	0.23	89	836190	303	44	248	11	297
CRW_01188	-	0.11	0.11	0.11	42	837482	347	50	291	6	351
CRW_01189	-	0.19	0.19	0.19	74	862254	323	55	258	10	318
CRW_01214	-	0.35	0.33	0.36	135	931923	248	39	198	11	270
CRW_01222	-	0.24	0.24	0.25	96	912886	298	54	240	4	301
CRW_01224	-	0.32	0.30	0.33	121	912914	248	29	212	7	276
CRW_01239	-	0.19	0.19	0.19	71	840087	311	46	252	13	311
CRW_01250	-	0.24	0.23	0.24	87	781517	284	38	233	13	291
CRW_01260	-	0.14	0.13	0.14	52	912906	325	45	273	7	341
CRW_01266	-	0.24	0.24	0.24	91	818175	306	39	255	12	290
CRW_01271	-	0.30	0.30	0.29	113	827157	283	32	239	12	268
CRW_01275	-	0.32	0.32	0.32	139	1082223	310	46	248	16	293
CRW_01283	-	0.37	0.36	0.38	149	963574	261	40	203	18	260
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
CRW_01314	-	0.23	0.22	0.24	91	937383	301	38	253	10	316
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.35	0.35	0.35	151	977475	287	44	231	12	283
CRW_01344	-	0.34	0.33	0.34	122	791557	238	42	190	6	244
CRW_01456	-	0.29	0.30	0.29	253	4240458	631	87	530	14	598
PDB_00187	-	0.39	0.39	0.38	282	3746210	558	88	373	97	434
PDB_00401	-	0.47	0.43	0.50	413	3996557	440	40	368	32	540
PDB_00409	-	0.32	0.37	0.27	90	688221	309	74	166	69	155
PDB_00609	-	0.38	0.39	0.38	309	4156470	571	100	407	64	481
PDB_00644	-	0.35	0.35	0.34	286	4328318	597	102	447	48	534
PDB_00675	-	0.42	0.39	0.45	381	4167987	491	39	421	31	593
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00704	-	0.52	0.48	0.56	465	4249241	401	49	315	37	508
PDB_00805	-	0.64	0.61	0.68	184	467756	111	11	77	23	118
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_00947	-	0.45	0.47	0.44	355	4310703	565	83	375	107	394
PDB_00993	-	0.39	0.39	0.39	313	3923400	544	81	407	56	489
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01089	-	0.41	0.41	0.40	310	4053360	546	89	369	88	449
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01140	-	0.51	0.49	0.53	457	4176627	454	58	353	43	473
PDB_01261	-	0.50	0.45	0.55	152	467750	130	4	122	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MaxExpect - scored higher in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]