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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Murlet(seed) - scored higher in this pairwise comparison

  4. Performance of Afold - scored lower in this pairwise comparison

  5. Compile and download dataset for Murlet(seed) & Afold [.zip] - may take several seconds...


Overview

Metric Murlet(seed) Afold
MCC 0.642 > 0.370
Average MCC ± 95% Confidence Intervals 0.642 ± > 0.370 ±
Sensitivity 0.606 > 0.369
Positive Predictive Value 0.681 > 0.371
Total TP 263 > 160
Total TN 977515 > 977470
Total FP 145 < 284
Total FP CONTRA 6 < 42
Total FP INCONS 117 < 229
Total FP COMP 22 > 13
Total FN 171 < 274
P-value 0.0

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Performance plots


  1. Comparison of performance of Murlet(seed) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and Afold).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and Afold).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 263
Total TN 977515
Total FP 145
Total FP CONTRA 6
Total FP INCONS 117
Total FP COMP 22
Total FN 171
Total Scores
MCC 0.642
Average MCC ± 95% Confidence Intervals 0.642 ±
Sensitivity 0.606
Positive Predictive Value 0.681
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.64 0.61 0.68 263 977515 145 6 117 22 171

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Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP 160
Total TN 977470
Total FP 284
Total FP CONTRA 42
Total FP INCONS 229
Total FP COMP 13
Total FN 274
Total Scores
MCC 0.370
Average MCC ± 95% Confidence Intervals 0.370 ±
Sensitivity 0.369
Positive Predictive Value 0.371
Nr of predictions 1

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2. Individual counts for Afold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.37 0.37 0.37 160 977470 284 42 229 13 274

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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