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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Murlet(seed) - scored higher in this pairwise comparison

  4. Performance of PknotsRG - scored lower in this pairwise comparison

  5. Compile and download dataset for Murlet(seed) & PknotsRG [.zip] - may take several seconds...


Overview

Metric Murlet(seed) PknotsRG
MCC 0.642 > 0.337
Average MCC ± 95% Confidence Intervals 0.642 ± > 0.337 ±
Sensitivity 0.606 > 0.334
Positive Predictive Value 0.681 > 0.340
Total TP 263 > 145
Total TN 977515 > 977474
Total FP 145 < 293
Total FP CONTRA 6 < 46
Total FP INCONS 117 < 236
Total FP COMP 22 > 11
Total FN 171 < 289
P-value 0.0

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Performance plots


  1. Comparison of performance of Murlet(seed) and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and PknotsRG).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and PknotsRG).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 263
Total TN 977515
Total FP 145
Total FP CONTRA 6
Total FP INCONS 117
Total FP COMP 22
Total FN 171
Total Scores
MCC 0.642
Average MCC ± 95% Confidence Intervals 0.642 ±
Sensitivity 0.606
Positive Predictive Value 0.681
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.64 0.61 0.68 263 977515 145 6 117 22 171

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Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP 145
Total TN 977474
Total FP 293
Total FP CONTRA 46
Total FP INCONS 236
Total FP COMP 11
Total FN 289
Total Scores
MCC 0.337
Average MCC ± 95% Confidence Intervals 0.337 ±
Sensitivity 0.334
Positive Predictive Value 0.340
Nr of predictions 1

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2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.34 0.33 0.34 145 977474 293 46 236 11 289

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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