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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Murlet(seed) - scored higher in this pairwise comparison

  4. Performance of UNAFold - scored lower in this pairwise comparison

  5. Compile and download dataset for Murlet(seed) & UNAFold [.zip] - may take several seconds...


Overview

Metric Murlet(seed) UNAFold
MCC 0.642 > 0.351
Average MCC ± 95% Confidence Intervals 0.642 ± > 0.351 ±
Sensitivity 0.606 > 0.348
Positive Predictive Value 0.681 > 0.354
Total TP 263 > 151
Total TN 977515 > 977475
Total FP 145 < 287
Total FP CONTRA 6 < 44
Total FP INCONS 117 < 231
Total FP COMP 22 > 12
Total FN 171 < 283
P-value 0.0

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Performance plots


  1. Comparison of performance of Murlet(seed) and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and UNAFold).

  2. Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and UNAFold).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP 263
Total TN 977515
Total FP 145
Total FP CONTRA 6
Total FP INCONS 117
Total FP COMP 22
Total FN 171
Total Scores
MCC 0.642
Average MCC ± 95% Confidence Intervals 0.642 ±
Sensitivity 0.606
Positive Predictive Value 0.681
Nr of predictions 1

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.64 0.61 0.68 263 977515 145 6 117 22 171

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Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP 151
Total TN 977475
Total FP 287
Total FP CONTRA 44
Total FP INCONS 231
Total FP COMP 12
Total FN 283
Total Scores
MCC 0.351
Average MCC ± 95% Confidence Intervals 0.351 ±
Sensitivity 0.348
Positive Predictive Value 0.354
Nr of predictions 1

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2. Individual counts for UNAFold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
CRW_01343

SSU_rRNA_archaea links to Rfam database...

0.35 0.35 0.35 151 977475 287 44 231 12 283

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

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