CompaRNA - on-line benchmarks of RNA structure prediction methods

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Overview

Metric	PETfold_pre2.0(seed)		CentroidFold
MCC	0.764	>	0.489
Average MCC ± 95% Confidence Intervals	0.766 ± 0.021	>	0.490 ± 0.026
Sensitivity	0.734	>	0.425
Positive Predictive Value	0.795	>	0.563
Total TP	28662	>	16616
Total TN	109145637	<	109152186
Total FP	11622	<	15214
Total FP CONTRA	1156	<	1949
Total FP INCONS	6254	<	10958
Total FP COMP	4212	>	2307
Total FN	10395	<	22441
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and CentroidFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and CentroidFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidFold).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	28662
Total TN	109145637
Total FP	11622
Total FP CONTRA	1156
Total FP INCONS	6254
Total FP COMP	4212
Total FN	10395

Total Scores
MCC	0.764
Average MCC ± 95% Confidence Intervals	0.766 ± 0.021
Sensitivity	0.734
Positive Predictive Value	0.795
Nr of predictions	82

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	405	1085153	80	10	33	37	53
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.80	0.78	0.83	369	1141870	113	17	60	36	105
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	395	1170759	96	18	43	35	75
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	390	1107367	95	16	43	36	66
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	392	1172293	95	17	44	34	81
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	388	1181504	96	16	45	35	88
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	394	1108851	94	17	43	34	63
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	392	1178434	98	11	43	44	73
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	387	1135829	97	15	47	35	76
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	392	1201573	98	16	44	38	84
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	385	1152477	92	16	43	33	81
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1179969	96	16	45	35	85
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	393	1190749	97	11	43	43	75
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.79	0.81	353	1082222	118	17	64	37	92
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1178430	105	17	47	41	87
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	384	1207786	102	15	50	37	91
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	392	1198473	97	16	45	36	86
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	388	1105880	95	18	42	35	65
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.86	388	1218691	98	16	46	36	96
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	391	1198474	97	16	45	36	87
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	386	1192295	93	16	43	34	82
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	391	1111838	94	15	42	37	64
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	378	1122307	105	14	52	39	84
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.86	380	1085161	98	14	46	38	66
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	390	1114823	98	15	43	40	67
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1110354	101	16	48	37	76
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	369	1129823	106	15	49	42	81
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.86	385	1179970	103	16	45	42	79
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1117815	109	16	52	41	76
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	388	1144894	97	16	43	38	76
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.78	0.77	0.80	331	1015610	118	18	66	34	101
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.84	372	1131319	111	16	53	42	84
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	377	1117816	104	17	50	37	81
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.84	382	1189200	109	16	55	38	94
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.74	0.72	0.77	332	1123817	133	22	79	32	129
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.66	0.63	0.69	310	1620452	212	16	122	74	184
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.67	307	1762046	213	15	135	63	212
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.68	0.66	0.70	305	1445417	186	15	113	58	157
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.68	305	1805503	209	14	128	67	216
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.66	0.63	0.69	315	1627654	205	15	126	64	187
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.64	0.59	0.69	307	1988567	210	13	128	69	210
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.60	0.56	0.63	269	1769595	236	16	141	79	208
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.58	0.52	0.64	269	1892065	217	19	132	66	245
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	305	1586418	211	15	133	63	193
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.65	0.61	0.69	308	1584644	204	15	123	66	193
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	312	1615046	210	15	130	65	191
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.67	306	1674911	213	16	132	65	201
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	300	1579311	211	15	127	69	182
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.69	313	1640313	205	15	125	65	193
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.68	0.65	0.71	322	1611455	199	13	120	66	174
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	306	1625847	221	14	139	68	192
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.61	0.58	0.65	297	1750802	227	16	141	70	218
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.68	0.66	0.70	306	1606090	215	15	117	83	158
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.67	0.64	0.71	318	1615053	200	15	117	68	178
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	303	1665770	223	20	132	71	192
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	391	1116315	99	14	45	40	67
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	376	1094037	99	6	41	52	69
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119327	104	6	42	56	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.89	382	1098473	103	6	42	55	64
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.63	0.60	0.66	294	1665777	224	19	135	70	197
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	294	1640327	224	15	130	79	189
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	297	1636709	218	15	124	79	184
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.66	287	1638522	227	17	129	81	199
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.87	357	1215610	110	5	48	57	89
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.81	309	945618	130	6	67	57	95
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	317	1201654	139	6	48	85	67
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	362	1137365	112	11	48	53	85
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	299	1152557	159	6	59	94	95
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.59	0.53	0.66	250	1401598	188	21	106	61	220
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.81	359	1117819	116	16	66	34	111
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	395	1135823	93	17	43	33	69
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.61	0.58	0.64	294	1606070	223	18	146	59	209
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.63	0.60	0.67	304	1593548	214	15	138	61	202
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.62	0.59	0.66	302	1693261	218	17	140	61	213
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.87	0.85	0.89	367	977489	81	8	37	36	67
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.86	361	1073423	107	9	52	46	134
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.76	0.68	0.86	364	1500354	120	9	51	60	171
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.85	365	1471040	119	5	60	54	182
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.76	0.67	0.86	376	1606090	108	8	54	46	186
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.77	0.70	0.86	376	1433534	108	3	58	47	164
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.73	0.86	387	1204680	102	10	51	41	140
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.86	368	1117832	112	8	52	52	123

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Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	16616
Total TN	109152186
Total FP	15214
Total FP CONTRA	1949
Total FP INCONS	10958
Total FP COMP	2307
Total FN	22441

Total Scores
MCC	0.489
Average MCC ± 95% Confidence Intervals	0.490 ± 0.026
Sensitivity	0.425
Positive Predictive Value	0.563
Nr of predictions	82

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2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.79	0.76	0.83	347	1085183	108	8	63	37	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.66	0.71	312	1141875	159	19	110	30	162
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.75	230	1170907	91	8	70	13	240
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.64	223	1107466	140	16	111	13	233
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	241	1172408	111	9	88	14	232
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.64	0.57	0.72	269	1181581	110	23	80	7	207
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.63	225	1108945	147	19	116	12	232
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.63	228	1178519	155	15	118	22	237
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.70	226	1135957	106	11	84	11	237
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.70	268	1201642	136	16	99	21	208
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.47	0.66	217	1152591	126	17	96	13	249
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.42	0.62	200	1180095	129	14	107	8	271
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	247	1190845	120	6	98	16	221
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.39	139	1082299	226	23	195	8	306
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	213	1178522	162	17	128	17	260
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	247	1207869	131	18	101	12	228
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	250	1198552	140	19	105	16	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.65	221	1105989	128	13	105	10	232
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.66	0.61	0.71	296	1218724	154	20	101	33	188
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.57	0.50	0.66	237	1198568	130	20	101	9	241
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.35	0.57	165	1192449	145	20	106	19	303
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.67	0.57	0.79	260	1111955	83	11	60	12	195
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.41	0.55	190	1122405	171	26	130	15	272
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.43	0.60	194	1085280	142	14	113	15	252
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.70	249	1114913	130	13	96	21	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.64	165	1110536	105	15	79	11	288
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.49	0.41	0.57	186	1129931	157	13	126	18	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.64	209	1180088	132	19	100	13	255
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.67	192	1117973	105	9	86	10	261
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	265	1144950	146	18	108	20	199
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.40	0.32	0.51	138	1015753	153	22	112	19	294
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.65	162	1131511	101	11	76	14	294
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	268	1117909	98	16	67	15	190
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.68	260	1189270	143	18	105	20	216
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.41	141	1123903	217	34	172	11	320
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	109	1620517	295	50	224	21	385
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.48	0.39	0.58	203	1762152	211	28	120	63	316
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.29	0.26	0.32	120	1445480	309	50	200	59	342
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	178	1805524	303	44	204	55	343
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.48	0.67	240	1627752	163	19	99	45	262
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.30	0.25	0.36	131	1988654	302	33	197	72	386
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	104	1769656	299	47	214	38	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.24	0.36	125	1892139	288	29	192	67	389
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	186	1586456	267	40	189	38	312
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.38	0.42	189	1584645	289	48	208	33	312
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.37	0.31	0.44	157	1615148	235	27	171	37	346
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.45	200	1674917	285	39	209	37	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.34	0.31	0.38	150	1579355	289	44	204	41	332
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	167	1640375	256	43	181	32	339
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.47	0.39	0.56	194	1611562	196	29	125	42	302
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.48	0.41	0.58	202	1625955	204	26	123	55	296
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.32	0.30	0.34	156	1750800	337	47	253	37	359
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.29	0.34	135	1606132	324	52	209	63	329
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.42	0.35	0.49	173	1615153	226	27	150	49	323
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.42	0.36	0.48	180	1665851	239	34	160	45	315
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	292	1116394	100	14	65	21	166
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.34	0.28	0.42	125	1094162	188	16	157	15	320
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.37	0.32	0.43	143	1119420	207	36	157	14	309
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	261	1098541	124	19	82	23	185
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.40	0.37	0.45	180	1665823	270	42	180	48	311
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.40	164	1640353	298	41	208	49	319
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.42	134	1636828	232	34	149	49	347
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	167	1638559	278	50	179	49	319
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.39	0.29	0.53	130	1215775	153	18	97	38	316
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.38	0.30	0.50	120	945758	137	16	106	15	284
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.54	0.38	0.77	146	1201835	66	6	38	22	238
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.40	0.65	179	1137510	120	5	92	23	268
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.28	0.44	110	1152672	173	15	124	34	284
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.58	0.49	0.69	230	1401641	149	10	94	45	240
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.59	0.56	0.62	265	1117830	190	14	151	25	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	119	15	86	18	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	185	1606114	268	39	190	39	318
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.46	0.41	0.52	206	1593608	228	40	151	37	300
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	192	1693289	291	56	183	52	323
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.41	0.52	176	977564	173	23	138	12	258
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.61	244	1073448	180	13	140	27	251
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	264	1500316	234	15	183	36	271
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.39	0.55	215	1471076	203	25	154	24	332
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.61	297	1606045	214	20	166	28	265
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	307	1433517	177	8	139	30	233
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.42	0.59	220	1204752	177	19	137	21	307
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	229	1117849	211	14	168	29	262

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]