Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Murlet(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Murlet(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Murlet(seed) |
|---|
| MCC |
0.868 |
>
|
0.642 |
| Average MCC ± 95% Confidence Intervals |
0.868
±
|
>
|
0.642
±
|
| Sensitivity |
0.846 |
>
|
0.606 |
| Positive Predictive Value |
0.891 |
>
|
0.681 |
| Total TP |
367 |
>
|
263 |
| Total TN |
977489 |
<
|
977515 |
| Total FP |
81 |
<
|
145 |
| Total FP CONTRA |
8 |
>
|
6 |
| Total FP INCONS |
37 |
<
|
117 |
| Total FP COMP |
36 |
>
|
22 |
| Total FN |
67 |
<
|
171 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Murlet(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Murlet(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Murlet(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Murlet(seed)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
367 |
| Total TN |
977489 |
| Total FP |
81 |
| Total FP CONTRA |
8 |
| Total FP INCONS |
37 |
| Total FP COMP |
36 |
| Total FN |
67 |
| Total Scores |
|---|
| MCC |
0.868 |
| Average MCC ± 95% Confidence Intervals |
0.868
±
|
| Sensitivity |
0.846 |
| Positive Predictive Value |
0.891 |
| Nr of predictions |
1 |
Performance of Murlet(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for Murlet(seed)
| Total Base Pair Counts |
|---|
| Total TP |
263 |
| Total TN |
977515 |
| Total FP |
145 |
| Total FP CONTRA |
6 |
| Total FP INCONS |
117 |
| Total FP COMP |
22 |
| Total FN |
171 |
| Total Scores |
|---|
| MCC |
0.642 |
| Average MCC ± 95% Confidence Intervals |
0.642
±
|
| Sensitivity |
0.606 |
| Positive Predictive Value |
0.681 |
| Nr of predictions |
1 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
