CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		Fold
MCC	0.400	>	0.375
Average MCC ± 95% Confidence Intervals	0.400 ± 0.017	>	0.371 ± 0.016
Sensitivity	0.396	>	0.381
Positive Predictive Value	0.403	>	0.369
Total TP	45837	>	44002
Total TN	437649346	>	437643777
Total FP	91537	<	97987
Total FP CONTRA	12116	<	12548
Total FP INCONS	55690	<	62662
Total FP COMP	23731	>	22777
Total FN	69800	<	71635
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and Fold).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	45837
Total TN	437649346
Total FP	91537
Total FP CONTRA	12116
Total FP INCONS	55690
Total FP COMP	23731
Total FN	69800

Total Scores
MCC	0.400
Average MCC ± 95% Confidence Intervals	0.400 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.403
Nr of predictions	273

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.60	0.59	0.62	123	3173742	665	11	64	590	86
CRW_00002	-	0.62	0.61	0.64	161	408807	138	15	77	46	103
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	305	1141852	193	33	126	34	169
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	162	1129847	266	32	215	19	288
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	243	1179987	211	33	153	25	221
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	162	1015591	302	49	223	30	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.37	0.35	0.40	159	1131362	267	28	211	28	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	244	1117827	214	31	158	25	214
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	157	1123815	302	48	230	24	304
CRW_00294	-	0.35	0.37	0.32	218	2620232	548	114	341	93	368
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	119	1620359	466	89	333	44	375
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	177	1761960	439	71	295	73	342
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	160	1805396	450	77	317	56	361
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.41	0.40	207	1627588	371	65	250	56	295
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.31	178	1988449	473	80	308	85	339
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.17	90	1769489	491	93	349	49	387
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	157	1891971	430	72	285	73	357
CRW_00338	-	0.17	0.18	0.16	72	1052984	381	79	291	11	323
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	173	1586376	380	60	262	58	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	368	66	255	47	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	149	1615021	383	63	270	50	354
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1674852	365	59	252	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1640234	427	81	301	45	356
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.27	0.27	0.26	136	1625786	435	79	305	51	362
CRW_00374	-	0.31	0.31	0.30	173	2182437	493	71	324	98	377
CRW_00375	-	0.29	0.31	0.28	168	2298840	515	97	335	83	373
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00381	-	0.30	0.30	0.30	168	2303172	499	66	325	108	389
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750696	459	82	340	37	377
CRW_00400	-	0.28	0.28	0.27	140	2677942	577	66	307	204	354
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	143	1606064	418	64	257	97	321
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00417	-	0.38	0.35	0.41	92	458176	145	22	113	10	170
CRW_00418	-	0.17	0.16	0.18	41	441105	195	17	167	11	219
CRW_00419	-	0.22	0.20	0.23	53	463939	184	19	155	10	212
CRW_00421	-	0.47	0.44	0.51	118	462970	138	19	96	23	148
CRW_00422	-	0.40	0.39	0.41	102	455284	172	23	126	23	161
CRW_00424	-	0.40	0.38	0.41	138	789063	222	20	175	27	225
CRW_00426	-	0.33	0.31	0.34	83	457203	172	20	140	12	182
CRW_00427	-	0.27	0.27	0.27	70	454324	205	34	153	18	191
CRW_00428	-	0.36	0.36	0.36	93	465837	182	33	132	17	167
CRW_00430	-	0.34	0.30	0.38	80	456282	139	29	99	11	186
CRW_00433	-	0.27	0.23	0.31	61	467830	144	12	125	7	202
CRW_00434	-	0.40	0.39	0.42	102	457205	147	21	118	8	161
CRW_00435	-	0.41	0.38	0.45	101	451501	135	17	106	12	164
CRW_00437	-	0.31	0.28	0.34	73	456277	152	21	119	12	187
CRW_00438	-	0.46	0.43	0.50	115	454349	130	20	97	13	153
CRW_00441	-	0.24	0.22	0.26	57	454362	173	22	140	11	205
CRW_00442	-	0.39	0.39	0.38	102	453363	175	42	121	12	159
CRW_00443	-	0.29	0.27	0.30	71	456253	185	27	139	19	189
CRW_00444	-	0.29	0.28	0.31	74	459121	179	26	140	13	189
CRW_00445	-	0.31	0.29	0.32	78	458162	170	32	131	7	187
CRW_00446	-	0.31	0.31	0.31	82	468730	198	29	155	14	183
CRW_00447	-	0.35	0.35	0.36	90	452428	179	23	135	21	170
CRW_00448	-	0.31	0.30	0.33	78	457209	178	24	135	19	183
CRW_00449	-	0.38	0.37	0.39	97	444850	160	29	120	11	163
CRW_00450	-	0.34	0.30	0.39	79	458199	141	17	108	16	183
CRW_00451	-	0.27	0.27	0.28	70	457197	195	30	149	16	194
CRW_00452	-	0.31	0.29	0.33	77	453394	184	26	131	27	185
CRW_00453	-	0.30	0.30	0.32	77	452432	174	31	136	7	184
CRW_00454	-	0.17	0.18	0.17	78	1730265	502	72	315	115	357
CRW_00456	-	0.35	0.32	0.38	86	470708	157	22	119	16	179
CRW_00457	-	0.41	0.41	0.41	107	467768	172	31	122	19	157
CRW_00458	-	0.48	0.48	0.49	126	464874	149	26	104	19	138
CRW_00459	-	0.37	0.35	0.40	92	462012	157	22	115	20	171
CRW_00460	-	0.34	0.34	0.33	186	1972534	467	57	314	96	358
CRW_00462	-	0.36	0.33	0.40	85	458191	137	23	104	10	176
CRW_00463	-	0.36	0.35	0.37	89	445797	171	31	123	17	165
CRW_00464	-	0.28	0.26	0.30	69	462009	170	17	146	7	195
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00468	-	0.53	0.52	0.54	448	4290159	425	70	308	47	407
CRW_00471	-	0.43	0.42	0.44	362	4211426	494	76	389	29	509
CRW_00474	-	0.55	0.55	0.55	457	3976772	426	72	309	45	379
CRW_00476	-	0.43	0.43	0.44	379	4278410	527	82	404	41	500
CRW_00478	-	0.54	0.54	0.55	462	4150679	418	72	308	38	401
CRW_00487	-	0.52	0.51	0.53	449	4223019	446	74	329	43	423
CRW_00488	-	0.47	0.45	0.50	400	4325410	442	68	333	41	486
CRW_00490	-	0.35	0.34	0.35	297	4144908	593	86	469	38	565
CRW_00495	-	0.46	0.45	0.47	390	4205618	479	62	380	37	468
CRW_00496	-	0.48	0.46	0.49	401	4194039	456	57	359	40	465
CRW_00497	-	0.47	0.48	0.46	394	4402180	499	91	363	45	428
CRW_00499	-	0.54	0.52	0.56	461	4372583	404	59	300	45	422
CRW_00500	-	0.46	0.46	0.47	395	4205604	489	86	365	38	473
CRW_00501	-	0.42	0.41	0.43	355	4284308	501	75	390	36	513
CRW_00502	-	0.64	0.62	0.65	543	4296015	342	53	235	54	329
CRW_00503	-	0.44	0.44	0.45	381	4252131	514	75	399	40	486
CRW_00507	-	0.38	0.37	0.39	317	4173790	521	75	423	23	548
CRW_00509	-	0.47	0.45	0.48	392	4182467	458	67	352	39	475
CRW_00511	-	0.46	0.45	0.48	384	4107603	455	49	375	31	472
CRW_00512	-	0.58	0.56	0.60	457	3814941	338	67	238	33	362
CRW_00516	-	0.61	0.59	0.63	515	4272613	348	43	255	50	361
CRW_00518	-	0.35	0.34	0.37	301	4357805	555	79	443	33	583
CRW_00519	-	0.70	0.69	0.71	573	4246346	301	47	189	65	259
CRW_00520	-	0.51	0.51	0.52	436	4208508	447	82	325	40	414
CRW_00521	-	0.44	0.43	0.46	359	4136343	458	71	353	34	485
CRW_00522	-	0.27	0.28	0.26	218	3642809	656	120	503	33	564
CRW_00525	-	0.27	0.28	0.26	224	4058965	681	79	557	45	589
CRW_00530	-	0.31	0.34	0.29	90	534781	233	62	162	9	178
CRW_00532	-	0.17	0.18	0.15	49	579103	287	75	199	13	216
CRW_00533	-	0.40	0.42	0.38	92	453389	204	31	116	57	127
CRW_00534	-	0.37	0.38	0.37	185	1832150	371	67	253	51	298
CRW_00535	-	0.31	0.33	0.29	108	898098	285	65	199	21	220
CRW_00538	-	0.31	0.32	0.30	97	811851	252	60	167	25	203
CRW_00542	-	0.19	0.21	0.17	66	994368	379	68	253	58	251
CRW_00545	-	0.29	0.32	0.26	61	1343744	400	54	121	225	132
CRW_00547	-	0.49	0.48	0.51	414	4278463	446	56	342	48	449
CRW_00579	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00583	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00594	-	0.26	0.27	0.25	106	1028472	348	49	268	31	289
CRW_00596	-	0.21	0.21	0.22	80	1024224	314	41	251	22	306
CRW_00597	-	0.24	0.25	0.24	103	1200042	380	41	289	50	308
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.35	186	1665698	397	77	264	56	305
CRW_00599	-	0.37	0.37	0.36	203	3754613	734	62	292	380	343
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.86	0.85	0.87	78	559063	257	2	10	245	14
CRW_00607	-	0.67	0.66	0.67	51	536054	291	10	15	266	26
CRW_00615	-	0.83	0.84	0.82	69	553794	281	5	10	266	13
CRW_00616	-	0.77	0.75	0.79	82	1699142	451	2	20	429	28
CRW_00617	-	0.45	0.50	0.40	32	426346	256	12	36	208	32
CRW_00678	-	0.45	0.46	0.43	56	666306	280	17	56	207	65
CRW_00680	-	0.59	0.60	0.57	73	516509	238	11	43	184	49
CRW_00683	-	0.40	0.45	0.36	61	460150	213	35	74	104	74
CRW_00684	-	0.49	0.49	0.49	66	612037	256	19	49	188	69
CRW_00702	-	0.68	0.81	0.58	61	357329	217	33	12	172	14
CRW_00704	-	0.84	0.85	0.83	80	386664	204	7	9	188	14
CRW_00705	-	0.37	0.43	0.32	37	1461081	491	29	48	414	49
CRW_00706	-	0.55	0.59	0.51	35	695541	358	15	19	324	24
CRW_00708	-	0.55	0.64	0.48	42	3457047	800	27	19	754	24
CRW_00709	-	0.03	0.04	0.03	3	1728763	593	28	76	489	82
CRW_00710	-	0.62	0.67	0.58	76	1040273	392	21	33	338	38
CRW_00711	-	0.35	0.38	0.32	47	2318636	641	31	67	543	77
CRW_00712	-	0.68	0.71	0.64	77	952770	373	10	33	330	31
CRW_00713	-	0.75	0.74	0.75	75	731345	330	6	19	305	26
CRW_00723	-	0.53	0.54	0.52	40	1583233	492	12	25	455	34
CRW_00724	-	0.70	0.74	0.65	131	3231952	604	22	48	534	45
CRW_00725	-	0.43	0.49	0.38	86	1957004	468	56	85	327	88
CRW_00726	-	0.69	0.72	0.67	135	3378498	648	24	43	581	52
CRW_00730	-	0.55	0.58	0.53	94	338897	161	19	66	76	67
CRW_00732	-	0.42	0.55	0.32	64	3401938	792	74	60	658	53
CRW_00734	-	0.22	0.30	0.17	33	536969	252	96	68	88	77
CRW_00735	-	0.33	0.42	0.26	51	677834	301	68	77	156	70
CRW_00740	-	0.04	0.05	0.03	6	489370	304	70	109	125	107
CRW_00742	-	0.67	0.68	0.66	115	1723122	475	19	40	416	53
CRW_00743	-	0.53	0.63	0.44	94	2224782	591	71	48	472	55
CRW_00744	-	0.66	0.65	0.67	120	3433331	757	10	49	698	66
CRW_00745	-	0.52	0.60	0.44	92	1343773	398	41	74	283	62
CRW_00746	-	0.50	0.50	0.49	110	550501	193	24	90	79	109
CRW_00747	-	0.27	0.29	0.26	54	3722146	782	34	122	626	134
CRW_00749	-	0.39	0.44	0.35	78	3058881	680	38	104	538	101
CRW_00750	-	0.53	0.59	0.48	94	709642	281	30	70	181	66
CRW_00751	-	0.84	0.83	0.85	148	489380	166	4	23	139	30
CRW_00752	-	0.36	0.42	0.31	78	2975326	676	57	119	500	106
CRW_00753	-	0.21	0.21	0.21	38	489372	233	35	110	88	140
CRW_00757	-	0.13	0.15	0.12	19	415258	251	40	99	112	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	155	1640275	399	64	272	63	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	146	1638444	427	68	297	62	340
CRW_00761	-	0.20	0.21	0.19	101	2863890	706	82	348	276	373
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215575	395	47	308	40	356
CRW_00765	-	0.40	0.40	0.39	103	452412	172	38	123	11	154
CRW_00766	-	0.31	0.28	0.33	68	440187	154	23	113	18	172
CRW_00768	-	0.44	0.43	0.46	111	471666	155	19	110	26	148
CRW_00769	-	0.54	0.53	0.56	134	451485	127	28	78	21	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	90	945593	335	34	283	18	314
CRW_00773	-	0.53	0.53	0.54	136	451474	132	27	88	17	123
CRW_00774	-	0.36	0.35	0.38	91	488326	168	24	125	19	172
CRW_00777	-	0.38	0.39	0.38	118	719086	236	39	157	40	186
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.28	112	1201627	335	46	240	49	272
CRW_00779	-	0.27	0.26	0.28	110	1031366	308	43	247	18	312
CRW_00780	-	0.26	0.23	0.30	58	475606	150	17	119	14	197
CRW_00781	-	0.25	0.26	0.24	115	1978584	476	59	297	120	335
CRW_00783	-	0.28	0.27	0.30	71	453388	180	22	147	11	188
CRW_00784	-	0.25	0.24	0.27	63	456254	187	31	142	14	199
CRW_00785	-	0.27	0.26	0.28	66	452441	182	20	149	13	187
CRW_00786	-	0.36	0.36	0.36	160	1946908	448	34	249	165	290
CRW_00787	-	0.44	0.42	0.46	129	646674	179	14	136	29	177
CRW_00788	-	0.30	0.29	0.31	106	1758408	447	46	190	211	255
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00790	-	0.22	0.23	0.22	101	1803599	462	50	300	112	346
CRW_00792	-	0.30	0.30	0.30	114	1581151	434	34	232	168	269
CRW_00793	-	0.43	0.42	0.44	157	1048718	264	42	159	63	220
CRW_00794	-	0.28	0.28	0.28	68	434537	200	16	157	27	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00796	-	0.30	0.29	0.32	67	384793	164	13	130	21	168
CRW_00797	-	0.38	0.38	0.38	131	692904	250	35	183	32	211
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.49	0.54	231	1401550	267	31	163	73	239
CRW_00801	-	0.42	0.42	0.41	105	438262	167	37	112	18	144
CRW_00802	-	0.20	0.19	0.21	48	460092	200	26	154	20	205
CRW_00803	-	0.23	0.23	0.22	105	1952798	456	67	306	83	344
CRW_00804	-	0.31	0.32	0.30	129	1420032	412	48	246	118	274
CRW_00806	-	0.26	0.26	0.26	115	1913512	439	51	268	120	334
CRW_00807	-	0.41	0.40	0.43	158	1391579	332	29	180	123	240
CRW_00808	-	0.27	0.28	0.26	101	1301298	415	57	235	123	255
CRW_00813	-	0.31	0.35	0.27	47	530793	264	47	78	139	86
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01134	-	0.34	0.33	0.36	139	964971	255	34	211	10	288
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01168	-	0.37	0.37	0.38	152	900751	269	37	213	19	259
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01186	-	0.29	0.28	0.29	109	836194	279	38	230	11	277
CRW_01188	-	0.17	0.17	0.17	66	837477	327	51	271	5	327
CRW_01189	-	0.22	0.22	0.23	85	862271	302	50	235	17	307
CRW_01214	-	0.25	0.23	0.27	93	931946	265	38	218	9	312
CRW_01222	-	0.23	0.23	0.23	92	912876	316	64	244	8	305
CRW_01224	-	0.35	0.34	0.37	135	912911	241	26	204	11	262
CRW_01239	-	0.25	0.26	0.25	98	840067	309	37	254	18	284
CRW_01250	-	0.35	0.34	0.36	127	781522	241	33	193	15	251
CRW_01260	-	0.15	0.15	0.15	57	912898	326	53	268	5	336
CRW_01266	-	0.26	0.26	0.26	100	818174	298	49	237	12	281
CRW_01271	-	0.35	0.35	0.35	134	827163	253	42	202	9	247
CRW_01275	-	0.39	0.39	0.40	167	1082236	283	47	206	30	265
CRW_01283	-	0.25	0.24	0.26	99	963588	291	41	238	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	182	1693209	381	68	261	52	333
CRW_01314	-	0.28	0.27	0.30	110	937397	272	35	223	14	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977480	279	40	223	16	276
CRW_01344	-	0.29	0.28	0.30	103	791562	258	40	206	12	263
CRW_01456	-	0.29	0.29	0.29	246	4240490	619	74	518	27	605
PDB_00187	-	0.34	0.35	0.32	254	3746167	591	106	426	59	462
PDB_00401	-	0.42	0.39	0.44	372	3996537	504	60	409	35	581
PDB_00409	-	0.31	0.37	0.27	91	688208	326	81	171	74	154
PDB_00609	-	0.36	0.37	0.35	292	4156461	600	103	430	67	498
PDB_00644	-	0.36	0.36	0.36	299	4328322	598	106	426	66	521
PDB_00675	-	0.44	0.41	0.47	395	4167994	482	50	389	43	579
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00704	-	0.40	0.37	0.42	360	4249217	528	57	436	35	613
PDB_00805	-	0.61	0.59	0.64	177	467751	133	13	87	33	125
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_00947	-	0.65	0.64	0.65	478	4310784	418	59	195	164	271
PDB_00993	-	0.34	0.34	0.34	271	3923394	589	94	442	53	531
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01089	-	0.50	0.50	0.50	376	4053374	484	89	289	106	383
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01140	-	0.55	0.52	0.57	485	4176644	420	59	307	54	445
PDB_01261	-	0.71	0.64	0.78	214	467754	64	0	60	4	122
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	44002
Total TN	437643777
Total FP	97987
Total FP CONTRA	12548
Total FP INCONS	62662
Total FP COMP	22777
Total FN	71635

Total Scores
MCC	0.375
Average MCC ± 95% Confidence Intervals	0.371 ± 0.016
Sensitivity	0.381
Positive Predictive Value	0.369
Nr of predictions	273

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.53	0.53	0.54	111	3173733	670	15	81	574	98
CRW_00002	-	0.58	0.56	0.61	148	408817	138	17	78	43	116
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	140	1015595	312	49	241	22	292
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.42	181	1123819	271	41	209	21	280
CRW_00294	-	0.28	0.31	0.26	179	2620222	594	116	388	90	407
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.24	0.21	118	1620334	479	100	348	31	376
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	156	1761959	461	80	308	73	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	153	1805378	473	77	342	54	368
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.19	0.21	0.18	99	1769473	516	102	347	67	378
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	169	1891947	449	66	303	80	345
CRW_00338	-	0.15	0.17	0.14	67	1052953	418	90	316	12	328
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	171	1586345	407	61	294	52	327
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	175	1584535	423	75	305	43	326
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	142	1614977	433	60	324	49	361
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	148	1640226	440	80	312	48	358
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00374	-	0.31	0.31	0.30	170	2182445	490	57	333	100	380
CRW_00375	-	0.26	0.27	0.25	146	2298853	533	71	370	92	395
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00381	-	0.32	0.33	0.31	186	2303125	522	73	347	102	371
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00400	-	0.25	0.27	0.24	131	2677916	622	66	342	214	363
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	157	1606045	425	57	269	99	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00417	-	0.30	0.29	0.32	76	458165	174	28	134	12	186
CRW_00418	-	0.14	0.13	0.15	34	441098	211	19	179	13	226
CRW_00419	-	0.16	0.16	0.17	42	463913	217	25	186	6	223
CRW_00421	-	0.49	0.47	0.51	126	462954	141	24	99	18	140
CRW_00422	-	0.32	0.32	0.33	83	455280	189	26	146	17	180
CRW_00424	-	0.44	0.44	0.44	161	789032	227	29	174	24	202
CRW_00426	-	0.26	0.26	0.26	68	457189	195	30	159	6	197
CRW_00427	-	0.24	0.23	0.25	61	454334	201	29	157	15	200
CRW_00428	-	0.36	0.35	0.36	91	465844	176	24	136	16	169
CRW_00430	-	0.22	0.21	0.22	56	456237	204	35	162	7	210
CRW_00433	-	0.42	0.39	0.45	102	467799	136	13	114	9	161
CRW_00434	-	0.40	0.38	0.42	100	457206	144	18	122	4	163
CRW_00435	-	0.32	0.31	0.34	83	451478	174	21	143	10	182
CRW_00437	-	0.22	0.22	0.23	57	456240	202	25	168	9	203
CRW_00438	-	0.19	0.19	0.20	50	454329	210	25	177	8	218
CRW_00441	-	0.24	0.22	0.25	58	454352	180	18	153	9	204
CRW_00442	-	0.32	0.31	0.33	82	453381	173	35	130	8	179
CRW_00443	-	0.24	0.23	0.25	59	456251	195	29	151	15	201
CRW_00444	-	0.32	0.30	0.34	80	459124	164	21	136	7	183
CRW_00445	-	0.32	0.30	0.33	80	458162	171	27	134	10	185
CRW_00446	-	0.27	0.26	0.27	70	468738	204	30	158	16	195
CRW_00447	-	0.31	0.30	0.31	79	452419	195	25	153	17	181
CRW_00448	-	0.39	0.38	0.41	98	457205	160	18	125	17	163
CRW_00449	-	0.33	0.33	0.34	85	444846	172	31	134	7	175
CRW_00450	-	0.36	0.34	0.38	90	458169	159	18	126	15	172
CRW_00451	-	0.24	0.24	0.25	63	457195	200	28	160	12	201
CRW_00452	-	0.23	0.22	0.25	57	453397	191	26	148	17	205
CRW_00453	-	0.33	0.32	0.34	83	452432	168	28	133	7	178
CRW_00454	-	0.23	0.24	0.22	103	1730260	477	71	296	110	332
CRW_00456	-	0.29	0.26	0.31	70	470711	170	16	138	16	195
CRW_00457	-	0.34	0.33	0.35	88	467778	176	23	139	14	176
CRW_00458	-	0.43	0.44	0.43	115	464864	165	23	128	14	149
CRW_00459	-	0.29	0.28	0.30	74	461992	195	26	149	20	189
CRW_00460	-	0.30	0.30	0.29	164	1972529	486	53	345	88	380
CRW_00462	-	0.24	0.23	0.25	59	458166	189	26	152	11	202
CRW_00463	-	0.37	0.36	0.38	92	445795	161	27	126	8	162
CRW_00464	-	0.41	0.38	0.43	101	462008	144	14	118	12	163
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00468	-	0.51	0.52	0.51	442	4290117	464	85	341	38	413
CRW_00471	-	0.38	0.38	0.38	335	4211372	567	76	470	21	536
CRW_00474	-	0.53	0.54	0.53	452	3976751	450	66	341	43	384
CRW_00476	-	0.41	0.41	0.41	363	4278379	566	74	459	33	516
CRW_00478	-	0.46	0.46	0.46	401	4150647	502	84	389	29	462
CRW_00487	-	0.55	0.54	0.55	475	4223009	426	72	315	39	397
CRW_00488	-	0.39	0.39	0.39	344	4325323	574	76	468	30	542
CRW_00490	-	0.34	0.34	0.33	296	4144871	628	83	510	35	566
CRW_00495	-	0.45	0.44	0.45	377	4205615	499	62	396	41	481
CRW_00496	-	0.45	0.45	0.46	389	4194006	493	45	416	32	477
CRW_00497	-	0.51	0.52	0.50	429	4402166	484	80	353	51	393
CRW_00499	-	0.47	0.47	0.47	419	4372520	494	54	410	30	464
CRW_00500	-	0.44	0.45	0.44	388	4205573	518	74	415	29	480
CRW_00501	-	0.44	0.44	0.44	384	4284264	504	68	412	24	484
CRW_00502	-	0.63	0.63	0.64	548	4295987	354	56	255	43	324
CRW_00503	-	0.42	0.43	0.41	372	4252089	559	75	450	34	495
CRW_00507	-	0.44	0.44	0.44	381	4173736	517	68	420	29	484
CRW_00509	-	0.37	0.37	0.37	325	4182395	593	79	479	35	542
CRW_00511	-	0.43	0.43	0.43	365	4107562	511	57	427	27	491
CRW_00512	-	0.58	0.58	0.58	475	3814889	373	63	276	34	344
CRW_00516	-	0.49	0.49	0.50	430	4272560	474	63	373	38	446
CRW_00518	-	0.35	0.35	0.35	312	4357745	592	72	499	21	572
CRW_00519	-	0.61	0.63	0.60	521	4246284	408	49	301	58	311
CRW_00520	-	0.50	0.50	0.50	426	4208505	462	64	356	42	424
CRW_00521	-	0.28	0.29	0.27	241	4136249	656	103	533	20	603
CRW_00522	-	0.22	0.23	0.21	179	3642805	696	102	564	30	603
CRW_00525	-	0.25	0.26	0.24	214	4058921	736	78	612	46	599
CRW_00530	-	0.21	0.24	0.19	64	534765	273	67	199	7	204
CRW_00532	-	0.15	0.17	0.14	45	579095	303	75	211	17	220
CRW_00533	-	0.31	0.33	0.30	73	453381	235	36	138	61	146
CRW_00534	-	0.34	0.35	0.32	171	1832124	401	76	284	41	312
CRW_00535	-	0.29	0.31	0.26	103	898081	308	73	213	22	225
CRW_00538	-	0.33	0.35	0.31	104	811840	258	55	176	27	196
CRW_00542	-	0.18	0.20	0.16	62	994361	387	78	254	55	255
CRW_00545	-	0.34	0.36	0.31	70	1343755	377	43	112	222	123
CRW_00547	-	0.47	0.48	0.47	413	4278393	509	68	401	40	450
CRW_00579	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00583	-	0.48	0.47	0.49	445	4290085	476	57	398	21	492
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00594	-	0.28	0.29	0.26	116	1028450	360	57	272	31	279
CRW_00596	-	0.21	0.23	0.20	87	1024171	354	57	281	16	299
CRW_00597	-	0.22	0.23	0.21	94	1200029	396	45	307	44	317
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.37	0.34	181	1665691	415	68	285	62	310
CRW_00599	-	0.38	0.39	0.38	212	3754606	721	58	294	369	334
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.84	0.84	0.84	77	559061	255	5	10	240	15
CRW_00607	-	0.52	0.52	0.51	40	536052	283	11	27	245	37
CRW_00615	-	0.65	0.70	0.61	57	553785	271	15	21	235	25
CRW_00616	-	0.48	0.52	0.45	57	1699118	505	21	50	434	53
CRW_00617	-	0.31	0.34	0.28	22	426347	269	11	46	212	42
CRW_00678	-	0.43	0.46	0.39	56	666292	324	18	69	237	65
CRW_00680	-	0.45	0.48	0.42	58	516498	256	16	64	176	64
CRW_00683	-	0.24	0.29	0.19	39	460117	283	49	115	119	96
CRW_00684	-	0.36	0.41	0.33	55	612002	303	40	74	189	80
CRW_00702	-	0.62	0.77	0.50	58	357319	208	43	15	150	17
CRW_00704	-	0.87	0.87	0.86	82	386665	190	4	9	177	12
CRW_00705	-	0.36	0.43	0.30	37	1461070	501	31	57	413	49
CRW_00706	-	0.60	0.68	0.53	40	695535	350	17	18	315	19
CRW_00708	-	0.59	0.64	0.55	42	3457059	774	17	17	740	24
CRW_00709	-	0.03	0.04	0.02	3	1728743	590	35	89	466	82
CRW_00710	-	0.58	0.62	0.54	71	1040272	379	23	37	319	43
CRW_00711	-	0.34	0.38	0.31	47	2318631	636	36	67	533	77
CRW_00712	-	0.47	0.55	0.41	59	952746	390	27	58	305	49
CRW_00713	-	0.77	0.72	0.81	73	731355	309	0	17	292	28
CRW_00723	-	0.46	0.54	0.39	40	1583207	517	24	39	454	34
CRW_00724	-	0.70	0.74	0.67	130	3231959	620	25	39	556	46
CRW_00725	-	0.41	0.49	0.35	86	1956982	523	72	91	360	88
CRW_00726	-	0.70	0.73	0.67	136	3378497	646	24	43	579	51
CRW_00730	-	0.54	0.58	0.51	94	338891	170	23	68	79	67
CRW_00732	-	0.39	0.50	0.31	58	3401948	738	63	67	608	59
CRW_00734	-	0.22	0.29	0.17	32	536981	261	67	86	108	78
CRW_00735	-	0.33	0.40	0.27	49	677849	308	52	80	176	72
CRW_00740	-	0.00	0.00	0.00	0	489347	301	85	123	93	113
CRW_00742	-	0.38	0.43	0.33	73	1723075	525	49	99	377	95
CRW_00743	-	0.21	0.26	0.16	39	2224753	638	83	120	435	110
CRW_00744	-	0.59	0.61	0.57	114	3433311	786	10	75	701	72
CRW_00745	-	0.51	0.59	0.43	91	1343770	391	51	68	272	63
CRW_00746	-	0.47	0.50	0.44	109	550480	213	29	107	77	110
CRW_00747	-	0.20	0.22	0.19	41	3722137	823	47	131	645	147
CRW_00749	-	0.33	0.37	0.28	67	3058864	722	39	131	552	112
CRW_00750	-	0.51	0.58	0.46	92	709636	274	27	81	166	68
CRW_00751	-	0.59	0.64	0.55	114	489348	200	26	67	107	64
CRW_00752	-	0.39	0.47	0.32	86	2975313	700	59	122	519	98
CRW_00753	-	0.16	0.18	0.14	32	489318	282	64	141	77	146
CRW_00757	-	0.07	0.09	0.06	11	415245	270	48	112	110	115
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.24	127	1640244	444	62	333	49	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.26	140	1638417	454	75	323	56	346
CRW_00761	-	0.18	0.20	0.17	93	2863859	739	102	367	270	381
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215568	391	45	317	29	356
CRW_00765	-	0.26	0.26	0.26	67	452416	202	38	155	9	190
CRW_00766	-	0.25	0.25	0.26	60	440159	189	16	156	17	180
CRW_00768	-	0.54	0.53	0.56	136	471665	136	16	89	31	123
CRW_00769	-	0.54	0.53	0.54	134	451477	134	23	91	20	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00773	-	0.40	0.40	0.40	103	451467	176	27	128	21	156
CRW_00774	-	0.36	0.35	0.38	91	488329	164	18	128	18	172
CRW_00777	-	0.38	0.39	0.36	119	719073	249	40	168	41	185
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.27	0.28	0.26	107	1201617	345	45	256	44	277
CRW_00779	-	0.31	0.31	0.31	129	1031345	316	42	250	24	293
CRW_00780	-	0.25	0.24	0.26	60	475567	188	23	150	15	195
CRW_00781	-	0.24	0.26	0.22	115	1978539	519	81	320	118	335
CRW_00783	-	0.23	0.23	0.23	60	453368	207	23	177	7	199
CRW_00784	-	0.27	0.27	0.28	70	456240	194	30	150	14	192
CRW_00785	-	0.29	0.27	0.30	69	452448	173	17	142	14	184
CRW_00786	-	0.35	0.37	0.33	165	1946858	484	44	284	156	285
CRW_00787	-	0.29	0.29	0.29	89	646643	234	33	188	13	217
CRW_00788	-	0.22	0.23	0.21	84	1758353	510	56	257	197	277
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00790	-	0.25	0.27	0.23	120	1803531	489	65	334	90	327
CRW_00792	-	0.24	0.25	0.23	95	1581110	472	71	255	146	288
CRW_00793	-	0.39	0.40	0.38	152	1048673	299	48	203	48	225
CRW_00794	-	0.28	0.28	0.28	70	434531	199	17	160	22	176
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00796	-	0.40	0.38	0.42	89	384792	147	9	113	25	146
CRW_00797	-	0.39	0.39	0.39	133	692912	235	25	183	27	209
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	300	34	192	74	227
CRW_00801	-	0.35	0.35	0.35	86	438269	178	26	135	17	163
CRW_00802	-	0.22	0.22	0.21	56	460057	221	35	172	14	197
CRW_00803	-	0.21	0.22	0.19	100	1952749	528	80	347	101	349
CRW_00804	-	0.28	0.28	0.27	114	1420031	431	54	256	121	289
CRW_00806	-	0.20	0.21	0.19	96	1913442	521	61	347	113	353
CRW_00807	-	0.35	0.35	0.34	140	1391539	376	33	234	109	258
CRW_00808	-	0.31	0.34	0.29	120	1301275	391	84	212	95	236
CRW_00813	-	0.37	0.41	0.33	55	530799	266	29	82	155	78
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01134	-	0.34	0.34	0.34	144	964931	297	39	241	17	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01168	-	0.38	0.38	0.38	156	900737	282	38	222	22	255
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01186	-	0.26	0.26	0.25	100	836177	308	34	260	14	286
CRW_01188	-	0.18	0.18	0.17	72	837448	352	58	287	7	321
CRW_01189	-	0.16	0.16	0.16	64	862233	359	43	301	15	328
CRW_01214	-	0.25	0.25	0.25	101	931894	308	40	260	8	304
CRW_01222	-	0.26	0.26	0.26	104	912871	314	56	245	13	293
CRW_01224	-	0.32	0.31	0.33	122	912904	267	27	223	17	275
CRW_01239	-	0.25	0.25	0.24	96	840063	314	45	252	17	286
CRW_01250	-	0.44	0.44	0.43	165	781495	235	32	183	20	213
CRW_01260	-	0.11	0.12	0.11	46	912863	372	54	313	5	347
CRW_01266	-	0.29	0.30	0.28	114	818158	296	43	245	8	267
CRW_01271	-	0.35	0.36	0.35	137	827145	270	36	223	11	244
CRW_01275	-	0.33	0.34	0.33	147	1082206	327	50	253	24	285
CRW_01283	-	0.22	0.22	0.22	92	963553	336	44	277	15	317
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	150	1693165	443	63	342	38	365
CRW_01314	-	0.24	0.23	0.24	94	937373	309	32	266	11	313
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977486	272	36	221	15	276
CRW_01344	-	0.30	0.31	0.30	112	791539	272	37	223	12	254
CRW_01456	-	0.29	0.29	0.28	251	4240442	660	81	554	25	600
PDB_00187	-	0.33	0.35	0.31	248	3746141	631	118	446	67	468
PDB_00401	-	0.43	0.41	0.45	388	3996522	500	57	411	32	565
PDB_00409	-	0.27	0.31	0.23	77	688211	338	75	188	75	168
PDB_00609	-	0.30	0.31	0.29	245	4156432	666	103	506	57	545
PDB_00644	-	0.35	0.36	0.34	293	4328291	633	100	469	64	527
PDB_00675	-	0.44	0.42	0.47	408	4167964	494	55	401	38	566
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00704	-	0.42	0.40	0.45	391	4249194	518	66	419	33	582
PDB_00805	-	0.62	0.61	0.63	183	467737	137	13	95	29	119
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00947	-	0.58	0.60	0.57	448	4310725	491	64	279	148	301
PDB_00993	-	0.30	0.31	0.29	248	3923351	648	99	503	46	554
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01089	-	0.49	0.50	0.49	377	4053361	515	77	313	125	382
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01140	-	0.52	0.51	0.54	475	4176612	456	57	351	48	455
PDB_01261	-	0.59	0.54	0.64	182	467742	108	6	98	4	154
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]