CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Sfold		ProbKnot
MCC	0.414	>	0.400
Average MCC ± 95% Confidence Intervals	0.411 ± 0.017	>	0.400 ± 0.017
Sensitivity	0.366	<	0.396
Positive Predictive Value	0.469	>	0.403
Total TP	42356	<	45837
Total TN	437672663	>	437649346
Total FP	65433	<	91537
Total FP CONTRA	8157	<	12116
Total FP INCONS	39813	<	55690
Total FP COMP	17463	<	23731
Total FN	73281	>	69800
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Sfold and ProbKnot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Sfold and ProbKnot).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Sfold and ProbKnot).
Comparison of average Matthews Correlation Coefficients (MCCs) for Sfold and ProbKnot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Sfold and ProbKnot).

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Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	42356
Total TN	437672663
Total FP	65433
Total FP CONTRA	8157
Total FP INCONS	39813
Total FP COMP	17463
Total FN	73281

Total Scores
MCC	0.414
Average MCC ± 95% Confidence Intervals	0.411 ± 0.017
Sensitivity	0.366
Positive Predictive Value	0.469
Nr of predictions	273

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2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.51	0.43	0.61	89	3173793	507	7	51	449	120
CRW_00002	-	0.55	0.46	0.67	122	408877	74	22	39	13	142
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.80	0.77	0.83	352	1085176	112	13	60	39	106
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	304	1141856	180	27	129	24	170
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.50	0.45	0.54	213	1170824	198	17	161	20	257
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.54	195	1107453	185	23	145	17	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	232	1172361	169	19	134	16	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.49	0.45	0.54	215	1181555	193	31	152	10	261
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.53	196	1108938	184	19	152	13	261
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.59	0.55	0.63	258	1178469	180	16	137	27	207
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.73	280	1135893	125	10	95	20	183
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.57	0.70	272	1201636	139	16	101	22	204
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	171	1152531	233	30	189	14	295
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.67	0.61	0.74	287	1180029	118	21	79	18	184
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.47	0.61	221	1190832	160	15	128	17	247
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.36	0.32	0.39	144	1082291	233	16	205	12	301
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.45	0.41	0.50	195	1178491	206	27	167	12	278
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	210	1207811	232	23	191	18	265
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	254	1198565	129	7	100	22	224
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.66	202	1106023	115	16	87	12	251
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.59	274	1218677	223	21	169	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	221	1198516	206	28	161	17	257
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.37	0.33	0.42	155	1192370	232	35	180	17	313
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.48	0.39	0.59	178	1111985	137	19	104	14	277
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.43	0.57	198	1122402	170	32	119	19	264
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.55	0.50	0.61	224	1085232	162	22	123	17	222
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.73	213	1114978	98	14	66	18	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.40	0.30	0.54	136	1110544	127	18	97	12	317
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.51	0.37	0.70	166	1130018	88	6	66	16	284
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.61	0.54	0.69	252	1180052	131	20	92	19	212
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.60	0.55	0.66	250	1117881	149	21	108	20	203
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	279	1144977	109	11	74	24	185
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.31	0.24	0.40	102	1015772	167	19	132	16	330
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.42	0.33	0.53	149	1131480	147	20	111	16	307
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.77	0.71	0.83	326	1117866	94	16	52	26	132
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.59	0.51	0.68	241	1189298	141	19	95	27	235
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.36	0.31	0.41	142	1123904	219	35	169	15	319
CRW_00294	-	0.39	0.34	0.44	199	2620451	339	70	185	84	387
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.19	0.17	0.21	84	1620496	355	58	262	35	410
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.30	0.36	156	1762064	326	45	238	43	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.21	0.19	0.24	88	1445476	332	57	229	46	374
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.26	0.35	138	1805554	298	56	202	40	383
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.46	0.37	0.56	187	1627778	175	32	113	30	315
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.41	145	1988661	279	50	159	70	372
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.22	0.21	0.24	102	1769589	370	75	255	40	375
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	153	1891989	400	68	275	57	361
CRW_00338	-	0.15	0.15	0.15	59	1053036	333	61	270	2	336
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.45	173	1586487	244	36	175	33	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	161	1584648	319	58	223	38	340
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.32	0.26	0.40	129	1615184	223	34	156	33	374
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	166	1674980	241	44	175	22	341
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.36	169	1579286	334	74	224	36	313
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	160	1640327	325	54	225	46	346
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	171	1611504	271	50	185	36	325
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.39	0.35	0.45	172	1625925	245	34	175	36	326
CRW_00374	-	0.33	0.29	0.37	162	2182564	335	51	228	56	388
CRW_00375	-	0.35	0.28	0.43	153	2299081	263	31	175	57	388
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.34	0.58	183	2126636	205	17	117	71	351
CRW_00381	-	0.33	0.30	0.37	169	2303271	369	60	231	78	388
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.27	0.31	138	1750806	345	60	252	33	377
CRW_00400	-	0.22	0.22	0.23	108	2677987	500	67	293	140	386
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	137	1606104	362	58	229	75	327
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.32	0.47	157	1615171	217	28	147	42	339
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	146	1665840	278	40	199	39	349
CRW_00417	-	0.38	0.32	0.45	85	458216	111	14	88	9	177
CRW_00418	-	0.28	0.22	0.36	58	441170	106	13	89	4	202
CRW_00419	-	0.17	0.12	0.24	32	464034	104	10	90	4	233
CRW_00421	-	0.56	0.37	0.83	99	463084	32	1	19	12	167
CRW_00422	-	0.41	0.38	0.45	101	455309	146	20	105	21	162
CRW_00424	-	0.39	0.38	0.41	137	789065	212	14	180	18	226
CRW_00426	-	0.51	0.42	0.61	111	457264	77	8	63	6	154
CRW_00427	-	0.26	0.21	0.33	54	454417	116	25	85	6	207
CRW_00428	-	0.40	0.35	0.47	90	465903	112	17	85	10	170
CRW_00430	-	0.35	0.24	0.52	63	456369	64	11	47	6	203
CRW_00433	-	0.40	0.27	0.59	70	467910	52	3	45	4	193
CRW_00434	-	0.25	0.22	0.28	58	457241	157	8	139	10	205
CRW_00435	-	0.38	0.33	0.43	88	451518	122	15	104	3	177
CRW_00437	-	0.26	0.21	0.33	55	456321	116	14	100	2	205
CRW_00438	-	0.35	0.33	0.38	88	454349	154	19	125	10	180
CRW_00441	-	0.22	0.17	0.28	44	454424	117	13	100	4	218
CRW_00442	-	0.40	0.35	0.46	91	453428	118	21	88	9	170
CRW_00443	-	0.38	0.31	0.48	80	456322	102	10	78	14	180
CRW_00444	-	0.24	0.20	0.30	53	459183	130	15	110	5	210
CRW_00445	-	0.32	0.26	0.38	70	458220	118	17	96	5	195
CRW_00446	-	0.44	0.35	0.55	94	468826	82	6	70	6	171
CRW_00447	-	0.35	0.28	0.43	72	452509	108	10	85	13	188
CRW_00448	-	0.34	0.30	0.40	78	457250	129	22	96	11	183
CRW_00449	-	0.33	0.27	0.41	69	444929	98	12	86	0	191
CRW_00450	-	0.34	0.28	0.42	74	458226	117	12	91	14	188
CRW_00451	-	0.21	0.19	0.23	50	457228	180	22	146	12	214
CRW_00452	-	0.31	0.26	0.39	67	453454	122	14	93	15	195
CRW_00453	-	0.27	0.22	0.34	58	452503	121	20	95	6	203
CRW_00454	-	0.21	0.17	0.27	72	1730464	286	23	171	92	363
CRW_00456	-	0.45	0.37	0.54	98	470753	93	13	71	9	167
CRW_00457	-	0.53	0.41	0.69	108	467872	63	6	42	15	156
CRW_00458	-	0.48	0.41	0.56	108	464937	94	13	72	9	156
CRW_00459	-	0.47	0.37	0.58	98	462073	86	11	59	16	165
CRW_00460	-	0.37	0.26	0.54	142	1972826	178	16	107	55	402
CRW_00462	-	0.33	0.28	0.40	72	458225	122	11	95	16	189
CRW_00463	-	0.41	0.31	0.54	78	445896	77	11	55	11	176
CRW_00464	-	0.45	0.37	0.54	98	462061	92	9	73	10	166
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.61	247	1116358	185	18	142	25	211
CRW_00468	-	0.52	0.46	0.58	396	4290307	314	46	236	32	459
CRW_00471	-	0.45	0.41	0.49	356	4211532	392	54	311	27	515
CRW_00474	-	0.55	0.50	0.61	417	3976922	301	48	223	30	419
CRW_00476	-	0.38	0.35	0.42	310	4278531	458	72	362	24	569
CRW_00478	-	0.55	0.53	0.57	454	4150721	369	70	276	23	409
CRW_00487	-	0.57	0.50	0.66	435	4223208	260	47	181	32	437
CRW_00488	-	0.46	0.35	0.61	310	4325706	210	36	159	15	576
CRW_00490	-	0.43	0.39	0.48	336	4145066	386	58	300	28	526
CRW_00495	-	0.50	0.44	0.58	379	4205792	316	34	245	37	479
CRW_00496	-	0.40	0.38	0.43	328	4194097	459	48	383	28	538
CRW_00497	-	0.42	0.40	0.45	328	4402297	448	65	338	45	494
CRW_00499	-	0.44	0.40	0.49	349	4372685	398	42	327	29	534
CRW_00500	-	0.41	0.37	0.46	317	4205762	393	52	319	22	551
CRW_00501	-	0.47	0.42	0.52	362	4284436	360	33	297	30	506
CRW_00502	-	0.60	0.52	0.68	457	4296178	240	33	178	29	415
CRW_00503	-	0.38	0.34	0.41	296	4252268	441	60	362	19	571
CRW_00507	-	0.42	0.37	0.48	322	4173936	366	50	297	19	543
CRW_00509	-	0.50	0.46	0.53	403	4182524	382	51	300	31	464
CRW_00511	-	0.39	0.36	0.42	310	4107675	449	42	384	23	546
CRW_00512	-	0.53	0.48	0.58	395	3815022	311	51	235	25	424
CRW_00516	-	0.52	0.47	0.59	409	4272730	311	46	241	24	467
CRW_00518	-	0.26	0.23	0.29	204	4357915	520	53	456	11	680
CRW_00519	-	0.63	0.53	0.74	444	4246555	193	28	128	37	388
CRW_00520	-	0.53	0.47	0.60	400	4208689	289	40	222	27	450
CRW_00521	-	0.40	0.30	0.52	257	4136633	252	27	209	16	587
CRW_00522	-	0.25	0.22	0.27	173	3643018	475	83	376	16	609
CRW_00525	-	0.27	0.28	0.27	231	4058954	667	83	557	27	582
CRW_00530	-	0.28	0.26	0.29	71	534854	184	48	122	14	197
CRW_00532	-	0.19	0.15	0.24	40	579258	133	33	95	5	225
CRW_00533	-	0.38	0.25	0.57	55	453532	52	8	33	11	164
CRW_00534	-	0.31	0.29	0.33	138	1832242	298	62	213	23	345
CRW_00535	-	0.33	0.30	0.36	100	898191	192	43	136	13	228
CRW_00538	-	0.28	0.24	0.32	73	811950	166	43	109	14	227
CRW_00542	-	0.19	0.20	0.18	62	994418	306	84	191	31	255
CRW_00545	-	0.24	0.18	0.32	34	1343873	184	16	57	111	159
CRW_00547	-	0.42	0.36	0.48	313	4278627	353	51	284	18	550
CRW_00579	-	0.46	0.41	0.52	382	4290253	367	36	314	17	555
CRW_00583	-	0.46	0.41	0.53	382	4290262	358	36	305	17	555
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.26	0.36	116	1094139	220	19	186	15	329
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.58	0.40	0.84	179	1119542	50	5	30	15	273
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.65	248	1098523	153	22	110	21	198
CRW_00594	-	0.24	0.24	0.23	96	1028486	336	39	274	23	299
CRW_00596	-	0.27	0.23	0.32	90	1024312	210	32	162	16	296
CRW_00597	-	0.27	0.26	0.28	106	1200097	311	38	234	39	305
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.37	165	1665773	333	62	225	46	326
CRW_00599	-	0.39	0.36	0.42	196	3754699	630	37	238	355	350
CRW_00604	-	0.55	0.57	0.53	46	411692	193	15	25	153	35
CRW_00606	-	0.76	0.65	0.88	60	559085	217	0	8	209	32
CRW_00607	-	0.62	0.52	0.74	40	536076	246	6	8	232	37
CRW_00615	-	0.52	0.55	0.48	45	553785	257	18	30	209	37
CRW_00616	-	0.84	0.76	0.93	84	1699156	432	2	4	426	26
CRW_00617	-	0.53	0.45	0.63	29	426380	204	1	16	187	35
CRW_00678	-	0.74	0.59	0.93	71	666359	115	0	5	110	50
CRW_00680	-	0.64	0.63	0.65	77	516518	179	7	34	138	45
CRW_00683	-	0.56	0.47	0.66	63	460225	158	7	25	126	72
CRW_00684	-	0.43	0.44	0.42	60	612029	233	30	52	151	75
CRW_00702	-	0.62	0.60	0.63	45	357364	124	6	20	98	30
CRW_00704	-	0.87	0.86	0.88	81	386668	181	4	7	170	13
CRW_00705	-	0.27	0.28	0.27	24	1461105	304	21	45	238	62
CRW_00706	-	0.61	0.54	0.68	32	695563	227	1	14	212	27
CRW_00708	-	0.51	0.56	0.46	37	3457054	510	21	23	466	29
CRW_00709	-	0.10	0.08	0.11	7	1728807	455	4	52	399	78
CRW_00710	-	0.66	0.57	0.76	65	1040318	293	3	17	273	49
CRW_00711	-	0.28	0.30	0.27	37	2318643	537	35	66	436	87
CRW_00712	-	0.63	0.54	0.73	58	952811	272	3	18	251	50
CRW_00713	-	0.60	0.57	0.63	58	731353	257	7	27	223	43
CRW_00723	-	0.48	0.50	0.46	37	1583229	394	22	22	350	37
CRW_00724	-	0.63	0.59	0.67	103	3231999	479	10	41	428	73
CRW_00725	-	0.48	0.52	0.44	91	1957023	447	34	83	330	83
CRW_00726	-	0.71	0.68	0.73	128	3378524	520	18	30	472	59
CRW_00730	-	0.52	0.56	0.48	90	338888	158	29	69	60	71
CRW_00732	-	0.34	0.38	0.31	45	3401990	497	61	40	396	72
CRW_00734	-	0.19	0.25	0.15	27	536980	230	87	72	71	83
CRW_00735	-	0.30	0.40	0.22	49	677806	231	102	73	56	72
CRW_00740	-	0.00	0.00	0.00	0	489455	174	39	61	74	113
CRW_00742	-	0.44	0.51	0.39	85	1723078	351	51	82	218	83
CRW_00743	-	0.47	0.54	0.40	81	2224794	525	63	57	405	68
CRW_00744	-	0.78	0.72	0.85	133	3433354	580	2	21	557	53
CRW_00745	-	0.49	0.50	0.48	77	1343818	291	36	49	206	77
CRW_00746	-	0.53	0.49	0.57	107	550538	129	17	63	49	112
CRW_00747	-	0.22	0.21	0.23	40	3722181	550	36	99	415	148
CRW_00749	-	0.41	0.44	0.39	79	3058898	552	37	87	428	100
CRW_00750	-	0.29	0.31	0.27	49	709655	239	47	85	107	111
CRW_00751	-	0.57	0.59	0.55	105	489365	137	32	53	52	73
CRW_00752	-	0.33	0.36	0.30	66	2975363	596	54	97	445	118
CRW_00753	-	0.18	0.19	0.18	33	489369	220	39	114	67	145
CRW_00757	-	0.14	0.15	0.14	19	415279	196	35	83	78	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.34	0.30	0.38	147	1640380	287	42	197	48	336
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.22	0.25	105	1636722	354	42	276	36	376
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.33	0.27	0.39	133	1638613	257	32	177	48	353
CRW_00761	-	0.18	0.16	0.20	74	2864046	527	60	241	226	400
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.33	0.28	0.40	124	1215709	234	16	171	47	322
CRW_00765	-	0.52	0.47	0.59	120	452472	95	9	75	11	137
CRW_00766	-	0.31	0.22	0.44	53	440271	79	13	54	12	187
CRW_00768	-	0.49	0.36	0.69	92	471772	55	2	40	13	167
CRW_00769	-	0.52	0.41	0.65	104	451564	69	12	45	12	148
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.30	0.27	0.34	108	945681	233	27	184	22	296
CRW_00773	-	0.53	0.48	0.59	124	451516	97	20	65	12	135
CRW_00774	-	0.33	0.27	0.39	72	488380	135	11	103	21	191
CRW_00777	-	0.30	0.28	0.33	84	719148	191	28	140	23	220
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.29	0.62	111	1201847	113	3	64	46	273
CRW_00779	-	0.26	0.22	0.31	94	1031466	213	29	177	7	328
CRW_00780	-	0.34	0.29	0.39	75	475607	124	19	99	6	180
CRW_00781	-	0.22	0.21	0.23	94	1978645	426	39	277	110	356
CRW_00783	-	0.38	0.22	0.68	56	453546	31	3	23	5	203
CRW_00784	-	0.25	0.22	0.28	57	456289	157	29	115	13	205
CRW_00785	-	0.38	0.29	0.51	73	452532	77	12	59	6	180
CRW_00786	-	0.37	0.33	0.42	148	1947000	351	22	181	148	302
CRW_00787	-	0.32	0.28	0.37	85	646722	155	20	126	9	221
CRW_00788	-	0.30	0.22	0.41	78	1758560	234	29	83	122	283
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.40	0.34	0.46	152	1137458	193	30	146	17	295
CRW_00790	-	0.26	0.22	0.31	98	1803729	314	16	207	91	349
CRW_00792	-	0.22	0.19	0.25	73	1581235	337	42	181	114	310
CRW_00793	-	0.58	0.45	0.75	170	1048850	90	13	43	34	207
CRW_00794	-	0.24	0.22	0.25	55	434562	180	12	149	19	191
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.17	0.20	68	1152586	311	44	223	44	326
CRW_00796	-	0.29	0.23	0.35	55	384845	117	15	88	14	180
CRW_00797	-	0.29	0.27	0.33	91	692975	208	24	163	21	251
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.46	0.59	215	1401613	204	32	115	57	255
CRW_00801	-	0.47	0.43	0.52	108	438307	114	27	74	13	141
CRW_00802	-	0.30	0.25	0.36	62	460150	118	24	84	10	191
CRW_00803	-	0.26	0.27	0.26	119	1952825	396	66	266	64	330
CRW_00804	-	0.43	0.31	0.60	124	1420250	130	8	73	49	279
CRW_00806	-	0.27	0.26	0.27	118	1913513	361	68	247	46	331
CRW_00807	-	0.33	0.25	0.43	101	1391710	221	22	113	86	297
CRW_00808	-	0.30	0.24	0.37	84	1301464	206	23	120	63	272
CRW_00813	-	0.16	0.18	0.15	24	530800	277	43	98	136	109
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	227	1117826	230	18	189	23	243
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	241	1135913	144	19	105	20	223
CRW_01134	-	0.32	0.26	0.39	112	965071	178	31	141	6	315
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.37	0.30	0.45	152	1606193	221	35	148	38	351
CRW_01168	-	0.35	0.33	0.36	135	900783	250	35	200	15	276
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	149	1593608	285	55	193	37	357
CRW_01186	-	0.28	0.21	0.38	82	836356	142	22	111	9	304
CRW_01188	-	0.18	0.17	0.19	67	837521	284	41	236	7	326
CRW_01189	-	0.23	0.19	0.27	74	862370	211	27	170	14	318
CRW_01214	-	0.31	0.25	0.40	100	932045	156	17	133	6	305
CRW_01222	-	0.24	0.23	0.26	90	912934	256	47	205	4	307
CRW_01224	-	0.40	0.35	0.46	140	912969	173	16	151	6	257
CRW_01239	-	0.12	0.10	0.15	38	840198	222	36	184	2	344
CRW_01250	-	0.32	0.27	0.39	101	781618	162	24	132	6	277
CRW_01260	-	0.18	0.14	0.23	55	913041	186	25	155	6	338
CRW_01266	-	0.37	0.32	0.43	123	818277	173	25	135	13	258
CRW_01271	-	0.32	0.29	0.34	111	827216	225	31	183	11	270
CRW_01275	-	0.36	0.31	0.42	136	1082334	199	32	154	13	296
CRW_01283	-	0.34	0.30	0.38	124	963636	225	27	179	19	285
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.45	175	1693327	254	42	176	36	340
CRW_01314	-	0.31	0.27	0.35	110	937451	218	25	179	14	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.34	0.41	147	977541	224	31	182	11	287
CRW_01344	-	0.37	0.29	0.47	105	791689	125	22	95	8	261
CRW_01456	-	0.36	0.29	0.45	244	4240788	310	30	266	14	607
PDB_00187	-	0.36	0.33	0.39	238	3746348	425	68	299	58	478
PDB_00401	-	0.52	0.45	0.60	433	3996655	320	37	253	30	520
PDB_00409	-	0.34	0.38	0.31	94	688247	282	63	147	72	151
PDB_00609	-	0.39	0.37	0.42	291	4156594	453	62	339	52	499
PDB_00644	-	0.44	0.37	0.52	301	4328577	326	53	222	51	519
PDB_00675	-	0.49	0.44	0.56	429	4168056	371	37	306	28	545
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.52	0.46	0.58	229	1073451	189	12	153	24	266
PDB_00704	-	0.54	0.46	0.62	449	4249351	300	34	236	30	524
PDB_00805	-	0.64	0.59	0.70	177	467775	99	11	65	23	125
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	263	1500337	220	22	156	42	272
PDB_00947	-	0.60	0.50	0.72	374	4310994	268	25	123	120	375
PDB_00993	-	0.45	0.37	0.54	299	3923643	315	42	217	56	503
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.47	173	1471098	222	33	166	23	374
PDB_01089	-	0.40	0.38	0.42	286	4053448	470	93	301	76	473
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.50	0.63	280	1606082	191	20	146	25	282
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.53	0.67	288	1433540	169	14	129	26	252
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.55	0.44	0.70	230	1204799	110	12	87	11	297
PDB_01140	-	0.49	0.43	0.56	403	4176769	373	33	290	50	527
PDB_01261	-	0.59	0.43	0.79	146	467843	43	2	37	4	190
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	227	1117836	223	19	178	26	264

^top

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	45837
Total TN	437649346
Total FP	91537
Total FP CONTRA	12116
Total FP INCONS	55690
Total FP COMP	23731
Total FN	69800

Total Scores
MCC	0.400
Average MCC ± 95% Confidence Intervals	0.400 ± 0.017
Sensitivity	0.396
Positive Predictive Value	0.403
Nr of predictions	273

^top

2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00001	-	0.60	0.59	0.62	123	3173742	665	11	64	590	86
CRW_00002	-	0.62	0.61	0.64	161	408807	138	15	77	46	103
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	305	1141852	193	33	126	34	169
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	162	1129847	266	32	215	19	288
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	243	1179987	211	33	153	25	221
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	162	1015591	302	49	223	30	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.37	0.35	0.40	159	1131362	267	28	211	28	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	244	1117827	214	31	158	25	214
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	157	1123815	302	48	230	24	304
CRW_00294	-	0.35	0.37	0.32	218	2620232	548	114	341	93	368
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	119	1620359	466	89	333	44	375
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	177	1761960	439	71	295	73	342
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	160	1805396	450	77	317	56	361
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.41	0.40	207	1627588	371	65	250	56	295
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.31	178	1988449	473	80	308	85	339
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.17	90	1769489	491	93	349	49	387
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	157	1891971	430	72	285	73	357
CRW_00338	-	0.17	0.18	0.16	72	1052984	381	79	291	11	323
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	173	1586376	380	60	262	58	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	368	66	255	47	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	149	1615021	383	63	270	50	354
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1674852	365	59	252	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1640234	427	81	301	45	356
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.27	0.27	0.26	136	1625786	435	79	305	51	362
CRW_00374	-	0.31	0.31	0.30	173	2182437	493	71	324	98	377
CRW_00375	-	0.29	0.31	0.28	168	2298840	515	97	335	83	373
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00381	-	0.30	0.30	0.30	168	2303172	499	66	325	108	389
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750696	459	82	340	37	377
CRW_00400	-	0.28	0.28	0.27	140	2677942	577	66	307	204	354
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	143	1606064	418	64	257	97	321
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00417	-	0.38	0.35	0.41	92	458176	145	22	113	10	170
CRW_00418	-	0.17	0.16	0.18	41	441105	195	17	167	11	219
CRW_00419	-	0.22	0.20	0.23	53	463939	184	19	155	10	212
CRW_00421	-	0.47	0.44	0.51	118	462970	138	19	96	23	148
CRW_00422	-	0.40	0.39	0.41	102	455284	172	23	126	23	161
CRW_00424	-	0.40	0.38	0.41	138	789063	222	20	175	27	225
CRW_00426	-	0.33	0.31	0.34	83	457203	172	20	140	12	182
CRW_00427	-	0.27	0.27	0.27	70	454324	205	34	153	18	191
CRW_00428	-	0.36	0.36	0.36	93	465837	182	33	132	17	167
CRW_00430	-	0.34	0.30	0.38	80	456282	139	29	99	11	186
CRW_00433	-	0.27	0.23	0.31	61	467830	144	12	125	7	202
CRW_00434	-	0.40	0.39	0.42	102	457205	147	21	118	8	161
CRW_00435	-	0.41	0.38	0.45	101	451501	135	17	106	12	164
CRW_00437	-	0.31	0.28	0.34	73	456277	152	21	119	12	187
CRW_00438	-	0.46	0.43	0.50	115	454349	130	20	97	13	153
CRW_00441	-	0.24	0.22	0.26	57	454362	173	22	140	11	205
CRW_00442	-	0.39	0.39	0.38	102	453363	175	42	121	12	159
CRW_00443	-	0.29	0.27	0.30	71	456253	185	27	139	19	189
CRW_00444	-	0.29	0.28	0.31	74	459121	179	26	140	13	189
CRW_00445	-	0.31	0.29	0.32	78	458162	170	32	131	7	187
CRW_00446	-	0.31	0.31	0.31	82	468730	198	29	155	14	183
CRW_00447	-	0.35	0.35	0.36	90	452428	179	23	135	21	170
CRW_00448	-	0.31	0.30	0.33	78	457209	178	24	135	19	183
CRW_00449	-	0.38	0.37	0.39	97	444850	160	29	120	11	163
CRW_00450	-	0.34	0.30	0.39	79	458199	141	17	108	16	183
CRW_00451	-	0.27	0.27	0.28	70	457197	195	30	149	16	194
CRW_00452	-	0.31	0.29	0.33	77	453394	184	26	131	27	185
CRW_00453	-	0.30	0.30	0.32	77	452432	174	31	136	7	184
CRW_00454	-	0.17	0.18	0.17	78	1730265	502	72	315	115	357
CRW_00456	-	0.35	0.32	0.38	86	470708	157	22	119	16	179
CRW_00457	-	0.41	0.41	0.41	107	467768	172	31	122	19	157
CRW_00458	-	0.48	0.48	0.49	126	464874	149	26	104	19	138
CRW_00459	-	0.37	0.35	0.40	92	462012	157	22	115	20	171
CRW_00460	-	0.34	0.34	0.33	186	1972534	467	57	314	96	358
CRW_00462	-	0.36	0.33	0.40	85	458191	137	23	104	10	176
CRW_00463	-	0.36	0.35	0.37	89	445797	171	31	123	17	165
CRW_00464	-	0.28	0.26	0.30	69	462009	170	17	146	7	195
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00468	-	0.53	0.52	0.54	448	4290159	425	70	308	47	407
CRW_00471	-	0.43	0.42	0.44	362	4211426	494	76	389	29	509
CRW_00474	-	0.55	0.55	0.55	457	3976772	426	72	309	45	379
CRW_00476	-	0.43	0.43	0.44	379	4278410	527	82	404	41	500
CRW_00478	-	0.54	0.54	0.55	462	4150679	418	72	308	38	401
CRW_00487	-	0.52	0.51	0.53	449	4223019	446	74	329	43	423
CRW_00488	-	0.47	0.45	0.50	400	4325410	442	68	333	41	486
CRW_00490	-	0.35	0.34	0.35	297	4144908	593	86	469	38	565
CRW_00495	-	0.46	0.45	0.47	390	4205618	479	62	380	37	468
CRW_00496	-	0.48	0.46	0.49	401	4194039	456	57	359	40	465
CRW_00497	-	0.47	0.48	0.46	394	4402180	499	91	363	45	428
CRW_00499	-	0.54	0.52	0.56	461	4372583	404	59	300	45	422
CRW_00500	-	0.46	0.46	0.47	395	4205604	489	86	365	38	473
CRW_00501	-	0.42	0.41	0.43	355	4284308	501	75	390	36	513
CRW_00502	-	0.64	0.62	0.65	543	4296015	342	53	235	54	329
CRW_00503	-	0.44	0.44	0.45	381	4252131	514	75	399	40	486
CRW_00507	-	0.38	0.37	0.39	317	4173790	521	75	423	23	548
CRW_00509	-	0.47	0.45	0.48	392	4182467	458	67	352	39	475
CRW_00511	-	0.46	0.45	0.48	384	4107603	455	49	375	31	472
CRW_00512	-	0.58	0.56	0.60	457	3814941	338	67	238	33	362
CRW_00516	-	0.61	0.59	0.63	515	4272613	348	43	255	50	361
CRW_00518	-	0.35	0.34	0.37	301	4357805	555	79	443	33	583
CRW_00519	-	0.70	0.69	0.71	573	4246346	301	47	189	65	259
CRW_00520	-	0.51	0.51	0.52	436	4208508	447	82	325	40	414
CRW_00521	-	0.44	0.43	0.46	359	4136343	458	71	353	34	485
CRW_00522	-	0.27	0.28	0.26	218	3642809	656	120	503	33	564
CRW_00525	-	0.27	0.28	0.26	224	4058965	681	79	557	45	589
CRW_00530	-	0.31	0.34	0.29	90	534781	233	62	162	9	178
CRW_00532	-	0.17	0.18	0.15	49	579103	287	75	199	13	216
CRW_00533	-	0.40	0.42	0.38	92	453389	204	31	116	57	127
CRW_00534	-	0.37	0.38	0.37	185	1832150	371	67	253	51	298
CRW_00535	-	0.31	0.33	0.29	108	898098	285	65	199	21	220
CRW_00538	-	0.31	0.32	0.30	97	811851	252	60	167	25	203
CRW_00542	-	0.19	0.21	0.17	66	994368	379	68	253	58	251
CRW_00545	-	0.29	0.32	0.26	61	1343744	400	54	121	225	132
CRW_00547	-	0.49	0.48	0.51	414	4278463	446	56	342	48	449
CRW_00579	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00583	-	0.50	0.49	0.51	455	4290099	452	62	369	21	482
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00594	-	0.26	0.27	0.25	106	1028472	348	49	268	31	289
CRW_00596	-	0.21	0.21	0.22	80	1024224	314	41	251	22	306
CRW_00597	-	0.24	0.25	0.24	103	1200042	380	41	289	50	308
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.35	186	1665698	397	77	264	56	305
CRW_00599	-	0.37	0.37	0.36	203	3754613	734	62	292	380	343
CRW_00604	-	0.88	0.89	0.87	72	411695	196	2	9	185	9
CRW_00606	-	0.86	0.85	0.87	78	559063	257	2	10	245	14
CRW_00607	-	0.67	0.66	0.67	51	536054	291	10	15	266	26
CRW_00615	-	0.83	0.84	0.82	69	553794	281	5	10	266	13
CRW_00616	-	0.77	0.75	0.79	82	1699142	451	2	20	429	28
CRW_00617	-	0.45	0.50	0.40	32	426346	256	12	36	208	32
CRW_00678	-	0.45	0.46	0.43	56	666306	280	17	56	207	65
CRW_00680	-	0.59	0.60	0.57	73	516509	238	11	43	184	49
CRW_00683	-	0.40	0.45	0.36	61	460150	213	35	74	104	74
CRW_00684	-	0.49	0.49	0.49	66	612037	256	19	49	188	69
CRW_00702	-	0.68	0.81	0.58	61	357329	217	33	12	172	14
CRW_00704	-	0.84	0.85	0.83	80	386664	204	7	9	188	14
CRW_00705	-	0.37	0.43	0.32	37	1461081	491	29	48	414	49
CRW_00706	-	0.55	0.59	0.51	35	695541	358	15	19	324	24
CRW_00708	-	0.55	0.64	0.48	42	3457047	800	27	19	754	24
CRW_00709	-	0.03	0.04	0.03	3	1728763	593	28	76	489	82
CRW_00710	-	0.62	0.67	0.58	76	1040273	392	21	33	338	38
CRW_00711	-	0.35	0.38	0.32	47	2318636	641	31	67	543	77
CRW_00712	-	0.68	0.71	0.64	77	952770	373	10	33	330	31
CRW_00713	-	0.75	0.74	0.75	75	731345	330	6	19	305	26
CRW_00723	-	0.53	0.54	0.52	40	1583233	492	12	25	455	34
CRW_00724	-	0.70	0.74	0.65	131	3231952	604	22	48	534	45
CRW_00725	-	0.43	0.49	0.38	86	1957004	468	56	85	327	88
CRW_00726	-	0.69	0.72	0.67	135	3378498	648	24	43	581	52
CRW_00730	-	0.55	0.58	0.53	94	338897	161	19	66	76	67
CRW_00732	-	0.42	0.55	0.32	64	3401938	792	74	60	658	53
CRW_00734	-	0.22	0.30	0.17	33	536969	252	96	68	88	77
CRW_00735	-	0.33	0.42	0.26	51	677834	301	68	77	156	70
CRW_00740	-	0.04	0.05	0.03	6	489370	304	70	109	125	107
CRW_00742	-	0.67	0.68	0.66	115	1723122	475	19	40	416	53
CRW_00743	-	0.53	0.63	0.44	94	2224782	591	71	48	472	55
CRW_00744	-	0.66	0.65	0.67	120	3433331	757	10	49	698	66
CRW_00745	-	0.52	0.60	0.44	92	1343773	398	41	74	283	62
CRW_00746	-	0.50	0.50	0.49	110	550501	193	24	90	79	109
CRW_00747	-	0.27	0.29	0.26	54	3722146	782	34	122	626	134
CRW_00749	-	0.39	0.44	0.35	78	3058881	680	38	104	538	101
CRW_00750	-	0.53	0.59	0.48	94	709642	281	30	70	181	66
CRW_00751	-	0.84	0.83	0.85	148	489380	166	4	23	139	30
CRW_00752	-	0.36	0.42	0.31	78	2975326	676	57	119	500	106
CRW_00753	-	0.21	0.21	0.21	38	489372	233	35	110	88	140
CRW_00757	-	0.13	0.15	0.12	19	415258	251	40	99	112	107
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	155	1640275	399	64	272	63	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	146	1638444	427	68	297	62	340
CRW_00761	-	0.20	0.21	0.19	101	2863890	706	82	348	276	373
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215575	395	47	308	40	356
CRW_00765	-	0.40	0.40	0.39	103	452412	172	38	123	11	154
CRW_00766	-	0.31	0.28	0.33	68	440187	154	23	113	18	172
CRW_00768	-	0.44	0.43	0.46	111	471666	155	19	110	26	148
CRW_00769	-	0.54	0.53	0.56	134	451485	127	28	78	21	118
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	90	945593	335	34	283	18	314
CRW_00773	-	0.53	0.53	0.54	136	451474	132	27	88	17	123
CRW_00774	-	0.36	0.35	0.38	91	488326	168	24	125	19	172
CRW_00777	-	0.38	0.39	0.38	118	719086	236	39	157	40	186
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.28	112	1201627	335	46	240	49	272
CRW_00779	-	0.27	0.26	0.28	110	1031366	308	43	247	18	312
CRW_00780	-	0.26	0.23	0.30	58	475606	150	17	119	14	197
CRW_00781	-	0.25	0.26	0.24	115	1978584	476	59	297	120	335
CRW_00783	-	0.28	0.27	0.30	71	453388	180	22	147	11	188
CRW_00784	-	0.25	0.24	0.27	63	456254	187	31	142	14	199
CRW_00785	-	0.27	0.26	0.28	66	452441	182	20	149	13	187
CRW_00786	-	0.36	0.36	0.36	160	1946908	448	34	249	165	290
CRW_00787	-	0.44	0.42	0.46	129	646674	179	14	136	29	177
CRW_00788	-	0.30	0.29	0.31	106	1758408	447	46	190	211	255
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00790	-	0.22	0.23	0.22	101	1803599	462	50	300	112	346
CRW_00792	-	0.30	0.30	0.30	114	1581151	434	34	232	168	269
CRW_00793	-	0.43	0.42	0.44	157	1048718	264	42	159	63	220
CRW_00794	-	0.28	0.28	0.28	68	434537	200	16	157	27	178
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00796	-	0.30	0.29	0.32	67	384793	164	13	130	21	168
CRW_00797	-	0.38	0.38	0.38	131	692904	250	35	183	32	211
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.49	0.54	231	1401550	267	31	163	73	239
CRW_00801	-	0.42	0.42	0.41	105	438262	167	37	112	18	144
CRW_00802	-	0.20	0.19	0.21	48	460092	200	26	154	20	205
CRW_00803	-	0.23	0.23	0.22	105	1952798	456	67	306	83	344
CRW_00804	-	0.31	0.32	0.30	129	1420032	412	48	246	118	274
CRW_00806	-	0.26	0.26	0.26	115	1913512	439	51	268	120	334
CRW_00807	-	0.41	0.40	0.43	158	1391579	332	29	180	123	240
CRW_00808	-	0.27	0.28	0.26	101	1301298	415	57	235	123	255
CRW_00813	-	0.31	0.35	0.27	47	530793	264	47	78	139	86
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01134	-	0.34	0.33	0.36	139	964971	255	34	211	10	288
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01168	-	0.37	0.37	0.38	152	900751	269	37	213	19	259
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01186	-	0.29	0.28	0.29	109	836194	279	38	230	11	277
CRW_01188	-	0.17	0.17	0.17	66	837477	327	51	271	5	327
CRW_01189	-	0.22	0.22	0.23	85	862271	302	50	235	17	307
CRW_01214	-	0.25	0.23	0.27	93	931946	265	38	218	9	312
CRW_01222	-	0.23	0.23	0.23	92	912876	316	64	244	8	305
CRW_01224	-	0.35	0.34	0.37	135	912911	241	26	204	11	262
CRW_01239	-	0.25	0.26	0.25	98	840067	309	37	254	18	284
CRW_01250	-	0.35	0.34	0.36	127	781522	241	33	193	15	251
CRW_01260	-	0.15	0.15	0.15	57	912898	326	53	268	5	336
CRW_01266	-	0.26	0.26	0.26	100	818174	298	49	237	12	281
CRW_01271	-	0.35	0.35	0.35	134	827163	253	42	202	9	247
CRW_01275	-	0.39	0.39	0.40	167	1082236	283	47	206	30	265
CRW_01283	-	0.25	0.24	0.26	99	963588	291	41	238	12	310
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	182	1693209	381	68	261	52	333
CRW_01314	-	0.28	0.27	0.30	110	937397	272	35	223	14	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977480	279	40	223	16	276
CRW_01344	-	0.29	0.28	0.30	103	791562	258	40	206	12	263
CRW_01456	-	0.29	0.29	0.29	246	4240490	619	74	518	27	605
PDB_00187	-	0.34	0.35	0.32	254	3746167	591	106	426	59	462
PDB_00401	-	0.42	0.39	0.44	372	3996537	504	60	409	35	581
PDB_00409	-	0.31	0.37	0.27	91	688208	326	81	171	74	154
PDB_00609	-	0.36	0.37	0.35	292	4156461	600	103	430	67	498
PDB_00644	-	0.36	0.36	0.36	299	4328322	598	106	426	66	521
PDB_00675	-	0.44	0.41	0.47	395	4167994	482	50	389	43	579
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00704	-	0.40	0.37	0.42	360	4249217	528	57	436	35	613
PDB_00805	-	0.61	0.59	0.64	177	467751	133	13	87	33	125
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_00947	-	0.65	0.64	0.65	478	4310784	418	59	195	164	271
PDB_00993	-	0.34	0.34	0.34	271	3923394	589	94	442	53	531
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01089	-	0.50	0.50	0.50	376	4053374	484	89	289	106	383
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01140	-	0.55	0.52	0.57	485	4176644	420	59	307	54	445
PDB_01261	-	0.71	0.64	0.78	214	467754	64	0	60	4	122
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]