CompaRNA - on-line benchmarks of RNA structure prediction methods
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Table of contents:

  1. Overview

  2. Performance Plots

  3. Performance of Afold - scored higher in this pairwise comparison

  4. Performance of Mastr(20) - scored lower in this pairwise comparison

  5. Compile and download dataset for Afold & Mastr(20) [.zip] - may take several seconds...


Overview

Metric Afold Mastr(20)
MCC 0.440 > 0.030
Average MCC ± 95% Confidence Intervals 0.513 ± 0.023 > 0.010 ± 0.013
Sensitivity 0.437 > 0.001
Positive Predictive Value 0.442 < 0.667
Total TP 12483 > 38
Total TN 50593203 < 50621365
Total FP 17794 > 20
Total FP CONTRA 2557 > 3
Total FP INCONS 13179 > 16
Total FP COMP 2058 > 1
Total FN 16055 < 28500
P-value 3.56938820447e-08

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Performance plots


  1. Comparison of performance of Afold and Mastr(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and Mastr(20)).

  2. Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and Mastr(20)).

  3. Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and Mastr(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and Mastr(20)).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP 12483
Total TN 50593203
Total FP 17794
Total FP CONTRA 2557
Total FP INCONS 13179
Total FP COMP 2058
Total FN 16055
Total Scores
MCC 0.440
Average MCC ± 95% Confidence Intervals 0.513 ± 0.023
Sensitivity 0.437
Positive Predictive Value 0.442
Nr of predictions 180

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2. Individual counts for Afold [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00004 0.51 0.52 0.51 50 47797 49 10 38 1 47
ASE_00005 0.61 0.56 0.66 66 57870 39 0 34 5 51
ASE_00006 0.66 0.67 0.65 62 47491 36 7 26 3 31
ASE_00007 0.56 0.53 0.59 58 59586 45 1 40 4 52
ASE_00012 0.41 0.39 0.43 48 73808 72 1 63 8 75
ASE_00020 0.57 0.54 0.60 68 73807 46 6 39 1 58
ASE_00021 0.54 0.51 0.59 81 104058 66 7 50 9 79
ASE_00028 0.58 0.56 0.61 70 84551 54 4 41 9 56
ASE_00037 0.34 0.32 0.37 35 59245 63 0 60 3 75
ASE_00038 0.53 0.52 0.54 53 53529 48 4 42 2 48
ASE_00040 0.50 0.47 0.53 63 78883 63 5 52 6 70
ASE_00041 0.53 0.51 0.55 55 57530 51 2 43 6 53
ASE_00042 0.44 0.42 0.47 61 89969 73 3 67 3 84
ASE_00044 0.74 0.70 0.78 74 54520 26 3 18 5 31
ASE_00064 0.43 0.43 0.44 38 45364 54 5 44 5 51
ASE_00068 0.33 0.32 0.36 27 37599 50 2 47 1 58
ASE_00074 0.48 0.47 0.50 56 67784 57 7 49 1 63
ASE_00075 0.65 0.59 0.72 95 108679 46 3 34 9 67
ASE_00077 0.52 0.51 0.54 44 45068 39 6 32 1 42
ASE_00078 0.67 0.67 0.67 56 42988 32 5 22 5 27
ASE_00080 0.50 0.48 0.52 59 71518 59 3 51 5 64
ASE_00081 0.46 0.45 0.46 44 49675 53 5 46 2 53
ASE_00082 0.57 0.54 0.61 63 70396 51 1 40 10 53
ASE_00083 0.71 0.67 0.76 74 62383 32 1 23 8 36
ASE_00084 0.72 0.71 0.73 70 53532 30 6 20 4 29
ASE_00087 0.56 0.51 0.61 74 88288 54 5 43 6 70
ASE_00090 0.46 0.47 0.47 47 55510 59 6 48 5 54
ASE_00092 0.68 0.65 0.72 73 63444 35 3 26 6 40
ASE_00104 0.53 0.50 0.56 60 64153 49 8 40 1 59
ASE_00115 0.55 0.54 0.56 55 54517 51 1 42 8 46
ASE_00118 0.38 0.38 0.39 39 60625 64 5 57 2 63
ASE_00119 0.63 0.60 0.67 65 62738 35 1 31 3 43
ASE_00123 0.44 0.42 0.46 36 38425 48 3 39 6 49
ASE_00125 0.64 0.63 0.65 55 39255 32 4 26 2 33
ASE_00126 0.74 0.74 0.73 61 40387 27 3 19 5 21
ASE_00128 0.74 0.72 0.77 72 53207 30 2 20 8 28
ASE_00129 0.77 0.74 0.80 82 62732 26 3 18 5 29
ASE_00131 0.62 0.55 0.70 47 39273 31 0 20 11 38
ASE_00134 0.43 0.42 0.44 40 50313 54 7 43 4 55
ASE_00135 0.45 0.44 0.45 48 63084 63 8 50 5 61
ASE_00136 0.69 0.65 0.72 60 48122 28 3 20 5 32
ASE_00137 0.44 0.43 0.45 42 48423 53 4 47 2 56
ASE_00138 0.51 0.49 0.53 40 40395 36 4 31 1 41
ASE_00140 0.62 0.57 0.67 71 70770 38 6 29 3 54
ASE_00146 0.55 0.52 0.59 64 70768 50 2 42 6 60
ASE_00153 0.66 0.67 0.65 49 57555 68 2 24 42 24
ASE_00163 0.64 0.63 0.66 59 53211 43 4 27 12 34
ASE_00165 0.64 0.60 0.67 61 52884 31 5 25 1 40
ASE_00170 0.70 0.68 0.72 63 48740 27 2 23 2 30
ASE_00171 0.70 0.69 0.71 65 48425 28 5 21 2 29
ASE_00172 0.62 0.61 0.63 65 58893 41 8 30 3 41
ASE_00174 0.59 0.57 0.62 62 60975 42 6 32 4 47
ASE_00175 0.59 0.59 0.59 63 59925 45 7 36 2 44
ASE_00179 0.64 0.65 0.62 55 44164 35 7 27 1 29
ASE_00180 0.71 0.69 0.74 69 51267 31 2 22 7 31
ASE_00181 0.54 0.53 0.55 56 57528 52 3 43 6 50
ASE_00182 0.60 0.58 0.62 79 84128 49 6 42 1 57
ASE_00183 0.71 0.70 0.72 79 61316 35 2 28 5 34
ASE_00185 0.72 0.70 0.74 89 73416 38 6 25 7 39
ASE_00186 0.73 0.69 0.78 91 78887 30 3 22 5 41
ASE_00190 0.49 0.46 0.52 41 45372 44 7 31 6 49
ASE_00197 0.49 0.46 0.52 67 89123 66 4 59 3 78
ASE_00198 0.61 0.59 0.64 60 52556 40 6 28 6 42
ASE_00203 0.70 0.69 0.72 66 46573 26 7 19 0 30
ASE_00212 0.70 0.67 0.74 99 93827 39 3 32 4 49
ASE_00214 0.72 0.72 0.73 74 56178 36 4 24 8 29
ASE_00215 0.54 0.51 0.57 50 48429 39 4 33 2 49
ASE_00216 0.67 0.68 0.66 56 39255 31 9 20 2 26
ASE_00217 0.40 0.37 0.45 33 40396 48 3 38 7 57
ASE_00221 0.49 0.45 0.54 53 64522 48 3 42 3 64
ASE_00228 0.52 0.53 0.50 46 46879 46 14 32 0 40
ASE_00229 0.61 0.61 0.62 53 42400 33 8 25 0 34
ASE_00231 0.65 0.65 0.65 62 47800 33 5 28 0 34
ASE_00232 0.63 0.64 0.61 54 38415 37 10 24 3 30
ASE_00234 0.58 0.53 0.62 69 75355 47 3 39 5 60
ASE_00238 0.59 0.59 0.60 67 64150 50 2 42 6 47
ASE_00241 0.49 0.49 0.49 43 43868 47 7 38 2 44
ASE_00254 0.49 0.46 0.52 38 36783 39 4 31 4 44
ASE_00255 0.64 0.62 0.66 80 74570 45 7 34 4 50
ASE_00257 0.55 0.55 0.55 53 50944 47 4 39 4 44
ASE_00263 0.62 0.63 0.62 76 70377 49 5 42 2 44
ASE_00267 0.32 0.31 0.34 27 45070 62 5 48 9 61
ASE_00270 0.76 0.73 0.80 94 72272 29 4 20 5 34
ASE_00274 0.45 0.44 0.46 45 55513 54 10 43 1 58
ASE_00277 0.38 0.38 0.38 35 48112 61 9 49 3 56
ASE_00279 0.68 0.66 0.71 67 53206 35 3 25 7 34
ASE_00280 0.36 0.36 0.37 35 51909 65 4 55 6 63
ASE_00282 0.56 0.55 0.57 70 77693 58 5 47 6 57
ASE_00283 0.75 0.73 0.77 78 61675 30 3 20 7 29
ASE_00284 0.62 0.60 0.64 65 58210 44 4 32 8 43
ASE_00285 0.75 0.70 0.80 86 68899 28 3 18 7 36
ASE_00286 0.43 0.42 0.43 39 46574 63 5 47 11 53
ASE_00287 0.59 0.55 0.63 57 54856 39 2 31 6 46
ASE_00292 0.62 0.58 0.66 80 81689 43 2 39 2 58
ASE_00294 0.74 0.68 0.80 117 114335 32 2 27 3 54
ASE_00296 0.25 0.24 0.27 35 91676 98 8 87 3 110
ASE_00297 0.50 0.50 0.51 49 52878 53 4 44 5 49
ASE_00298 0.28 0.27 0.29 31 67420 79 9 68 2 82
ASE_00328 0.40 0.41 0.40 46 72656 75 3 66 6 66
ASE_00332 0.56 0.54 0.59 75 81682 55 2 51 2 63
ASE_00340 0.76 0.73 0.78 62 45977 26 6 11 9 23
ASE_00342 0.57 0.54 0.60 62 62378 41 5 36 0 53
ASE_00361 0.51 0.49 0.53 62 75349 59 7 48 4 65
ASE_00362 0.61 0.60 0.61 55 48115 39 6 29 4 36
ASE_00363 0.53 0.54 0.53 51 51263 47 5 41 1 43
ASE_00364 0.42 0.42 0.43 44 54182 63 4 55 4 61
ASE_00366 0.54 0.56 0.53 55 58549 52 10 39 3 43
ASE_00367 0.28 0.29 0.27 25 42979 68 8 59 1 61
ASE_00369 0.56 0.55 0.58 59 55843 44 4 39 1 48
ASE_00370 0.63 0.63 0.62 53 41820 33 7 25 1 31
ASE_00372 0.63 0.62 0.65 62 51907 39 6 28 5 38
ASE_00374 0.53 0.52 0.54 46 44765 40 8 31 1 42
ASE_00376 0.48 0.46 0.50 48 56857 52 4 44 4 57
ASE_00379 0.57 0.55 0.60 49 45974 41 3 30 8 40
ASE_00382 0.49 0.49 0.50 41 41823 45 6 35 4 43
ASE_00383 0.58 0.55 0.62 58 54521 40 3 33 4 47
ASE_00384 0.41 0.39 0.43 36 48432 58 2 46 10 56
ASE_00386 0.65 0.65 0.65 62 50307 41 3 31 7 34
ASE_00387 0.43 0.43 0.43 45 55841 59 6 53 0 59
ASE_00388 0.43 0.42 0.44 37 45669 53 3 44 6 52
ASE_00390 0.44 0.42 0.47 36 42118 52 6 35 11 49
ASE_00393 0.37 0.35 0.39 33 47811 58 2 49 7 60
ASE_00394 0.69 0.68 0.70 63 46881 29 5 22 2 30
ASE_00395 0.65 0.63 0.68 53 41538 35 1 24 10 31
ASE_00396 0.16 0.16 0.16 13 41535 71 2 66 3 70
ASE_00397 0.54 0.54 0.54 57 54510 51 4 44 3 48
ASE_00398 0.61 0.58 0.65 60 55852 37 1 32 4 44
ASE_00400 0.53 0.53 0.54 56 57866 51 7 41 3 50
ASE_00401 0.52 0.53 0.51 67 76897 65 13 51 1 59
ASE_00402 0.41 0.40 0.43 34 42406 52 7 39 6 51
ASE_00403 0.44 0.42 0.47 45 55849 55 4 47 4 62
ASE_00404 0.55 0.54 0.57 46 42990 43 0 35 8 39
ASE_00411 0.35 0.35 0.35 31 49366 63 7 51 5 58
ASE_00413 0.55 0.58 0.52 47 44461 44 13 30 1 34
ASE_00415 0.51 0.51 0.51 53 54843 53 7 43 3 50
ASE_00416 0.65 0.61 0.68 78 77307 43 0 36 7 49
ASE_00419 0.75 0.73 0.78 75 54850 26 5 16 5 28
ASE_00422 0.44 0.44 0.45 41 46880 56 5 45 6 53
ASE_00428 0.51 0.50 0.53 62 76520 58 5 49 4 63
ASE_00430 0.64 0.63 0.66 61 46878 39 5 27 7 36
ASE_00437 0.42 0.39 0.46 53 79285 64 4 59 1 82
ASE_00441 0.77 0.72 0.83 81 64163 30 1 16 13 31
ASE_00448 0.22 0.22 0.23 25 64150 91 6 80 5 87
ASE_00451 0.61 0.57 0.66 71 70768 40 2 35 3 54
CRW_00298 0.19 0.20 0.18 99 1620353 490 81 367 42 395
CRW_00301 0.30 0.31 0.30 162 1761957 428 86 298 44 357
CRW_00310 0.29 0.30 0.28 157 1805386 453 81 326 46 364
CRW_00326 0.41 0.41 0.42 204 1627621 339 47 238 54 298
CRW_00330 0.32 0.32 0.31 167 1988474 452 69 305 78 350
CRW_00332 0.18 0.20 0.17 94 1769479 492 105 343 44 383
CRW_00333 0.29 0.30 0.28 153 1891946 449 74 312 63 361
CRW_00345 0.34 0.35 0.33 175 1586340 403 71 285 47 323
CRW_00348 0.25 0.25 0.24 127 1614982 437 68 326 43 376
CRW_00358 0.36 0.36 0.35 183 1674845 391 61 276 54 324
CRW_00366 0.35 0.36 0.33 174 1579230 395 88 261 46 308
CRW_00370 0.28 0.28 0.28 143 1640248 420 77 298 45 363
CRW_00371 0.29 0.29 0.28 145 1611389 409 77 299 33 351
CRW_00372 0.36 0.36 0.35 181 1625787 378 59 279 40 317
CRW_00379 0.42 0.43 0.41 227 2126401 423 55 270 98 307
CRW_00403 0.31 0.31 0.30 146 1606035 431 65 282 84 318
CRW_00411 0.34 0.34 0.34 169 1615006 381 62 266 53 327
CRW_00598 0.31 0.33 0.29 162 1665675 440 88 300 52 329
CRW_00758 0.29 0.30 0.29 144 1640268 416 66 288 62 339
CRW_00759 0.22 0.22 0.21 107 1636633 462 78 327 57 374
CRW_00760 0.28 0.29 0.28 140 1638458 411 74 283 54 346
CRW_00772 0.26 0.25 0.26 103 945610 313 37 250 26 301
CRW_01153 0.32 0.32 0.32 160 1606024 390 54 290 46 343
CRW_01171 0.32 0.33 0.31 167 1593473 402 81 284 37 339
CRW_01300 0.36 0.37 0.35 189 1693186 392 71 274 47 326
PDB_00571 -0.01 0.00 0.00 0 3302 20 5 14 1 25
PDB_00828 0.88 0.78 1.00 21 2464 0 0 0 0 6
PDB_00829 0.82 0.71 0.94 17 2260 1 0 1 0 7
RFA_00599 0.67 0.70 0.64 78 101353 66 16 28 22 33
RFA_00601 0.09 0.11 0.08 12 99092 139 35 96 8 102
RFA_00602 0.50 0.53 0.47 62 101344 91 18 51 22 54
TMR_00038 0.25 0.25 0.25 28 71140 89 12 73 4 82
TMR_00046 0.47 0.48 0.46 46 62734 61 10 45 6 50
TMR_00048 0.35 0.37 0.34 35 64876 73 9 60 4 60
TMR_00458 0.22 0.22 0.23 20 63458 76 7 61 8 73
TMR_00568 0.57 0.57 0.58 56 60629 50 3 38 9 43

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Performance of Mastr(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(20)

Total Base Pair Counts
Total TP 38
Total TN 50621365
Total FP 20
Total FP CONTRA 3
Total FP INCONS 16
Total FP COMP 1
Total FN 28500
Total Scores
MCC 0.030
Average MCC ± 95% Confidence Intervals 0.010 ± 0.013
Sensitivity 0.001
Positive Predictive Value 0.667
Nr of predictions 180

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2. Individual counts for Mastr(20) [ download as .csv ]

RNA Chain Rfam family MCC SENS PPV TP TN FP FP CONTRA FP INCONS FP COMP FN
ASE_00004 0.00 0.00 0.00 0 47895 0 0 0 0 97
ASE_00005 0.00 0.00 0.00 0 57970 0 0 0 0 117
ASE_00006 0.00 0.00 0.00 0 47586 0 0 0 0 93
ASE_00007 0.00 0.00 0.00 0 59685 0 0 0 0 110
ASE_00012 0.00 0.00 0.00 0 73920 0 0 0 0 123
ASE_00020 0.00 0.00 0.00 0 73920 0 0 0 0 126
ASE_00021 0.00 0.00 0.00 0 104196 0 0 0 0 160
ASE_00028 0.00 0.00 0.00 0 84666 0 0 0 0 126
ASE_00037 0.00 0.00 0.00 0 59340 0 0 0 0 110
ASE_00038 0.00 0.00 0.00 0 53628 0 0 0 0 101
ASE_00040 0.00 0.00 0.00 0 79003 0 0 0 0 133
ASE_00041 0.00 0.00 0.00 0 57630 0 0 0 0 108
ASE_00042 0.00 0.00 0.00 0 90100 0 0 0 0 145
ASE_00044 0.00 0.00 0.00 0 54615 0 0 0 0 105
ASE_00064 0.00 0.00 0.00 0 45451 0 0 0 0 89
ASE_00068 0.00 0.00 0.00 0 37675 0 0 0 0 85
ASE_00074 0.00 0.00 0.00 0 67896 0 0 0 0 119
ASE_00075 0.00 0.00 0.00 0 108811 0 0 0 0 162
ASE_00077 0.00 0.00 0.00 0 45150 0 0 0 0 86
ASE_00078 0.00 0.00 0.00 0 43071 0 0 0 0 83
ASE_00080 0.00 0.00 0.00 0 71631 0 0 0 0 123
ASE_00081 0.00 0.00 0.00 0 49770 0 0 0 0 97
ASE_00082 0.00 0.00 0.00 0 70500 0 0 0 0 116
ASE_00083 0.00 0.00 0.00 0 62481 0 0 0 0 110
ASE_00084 0.00 0.00 0.00 0 53628 0 0 0 0 99
ASE_00087 0.00 0.00 0.00 0 88410 0 0 0 0 144
ASE_00090 0.00 0.00 0.00 0 55611 0 0 0 0 101
ASE_00092 0.00 0.00 0.00 0 63546 0 0 0 0 113
ASE_00104 0.00 0.00 0.00 0 64261 0 0 0 0 119
ASE_00115 0.00 0.00 0.00 0 54615 0 0 0 0 101
ASE_00118 0.00 0.00 0.00 0 60726 0 0 0 0 102
ASE_00119 0.00 0.00 0.00 0 62835 0 0 0 0 108
ASE_00123 0.00 0.00 0.00 0 38503 0 0 0 0 85
ASE_00125 0.00 0.00 0.00 0 39340 0 0 0 0 88
ASE_00126 0.00 0.00 0.00 0 40470 0 0 0 0 82
ASE_00128 0.00 0.00 0.00 0 53301 0 0 0 0 100
ASE_00129 0.00 0.00 0.00 0 62835 0 0 0 0 111
ASE_00131 0.00 0.00 0.00 0 39340 0 0 0 0 85
ASE_00134 0.00 0.00 0.00 0 50403 0 0 0 0 95
ASE_00135 0.00 0.00 0.00 0 63190 0 0 0 0 109
ASE_00136 0.00 0.00 0.00 0 48205 0 0 0 0 92
ASE_00137 0.00 0.00 0.00 0 48516 0 0 0 0 98
ASE_00138 0.00 0.00 0.00 0 40470 0 0 0 0 81
ASE_00140 0.00 0.00 0.00 0 70876 0 0 0 0 125
ASE_00146 0.00 0.00 0.00 0 70876 0 0 0 0 124
ASE_00153 0.00 0.00 0.00 0 57630 0 0 0 0 73
ASE_00163 0.00 0.00 0.00 0 53301 0 0 0 0 93
ASE_00165 0.00 0.00 0.00 0 52975 0 0 0 0 101
ASE_00170 0.00 0.00 0.00 0 48828 0 0 0 0 93
ASE_00171 0.00 0.00 0.00 0 48516 0 0 0 0 94
ASE_00172 0.00 0.00 0.00 0 58996 0 0 0 0 106
ASE_00174 0.00 0.00 0.00 0 61075 0 0 0 0 109
ASE_00175 0.00 0.00 0.00 0 60031 0 0 0 0 107
ASE_00179 0.00 0.00 0.00 0 44253 0 0 0 0 84
ASE_00180 0.00 0.00 0.00 0 51360 0 0 0 0 100
ASE_00181 0.00 0.00 0.00 0 57630 0 0 0 0 106
ASE_00182 0.00 0.00 0.00 0 84255 0 0 0 0 136
ASE_00183 0.00 0.00 0.00 0 61425 0 0 0 0 113
ASE_00185 0.00 0.00 0.00 0 73536 0 0 0 0 128
ASE_00186 0.00 0.00 0.00 0 79003 0 0 0 0 132
ASE_00190 0.00 0.00 0.00 0 45451 0 0 0 0 90
ASE_00197 0.00 0.00 0.00 0 89253 0 0 0 0 145
ASE_00198 0.00 0.00 0.00 0 52650 0 0 0 0 102
ASE_00203 0.00 0.00 0.00 0 46665 0 0 0 0 96
ASE_00212 0.00 0.00 0.00 0 93961 0 0 0 0 148
ASE_00214 0.00 0.00 0.00 0 56280 0 0 0 0 103
ASE_00215 0.00 0.00 0.00 0 48516 0 0 0 0 99
ASE_00216 0.00 0.00 0.00 0 39340 0 0 0 0 82
ASE_00217 0.00 0.00 0.00 0 40470 0 0 0 0 90
ASE_00221 0.00 0.00 0.00 0 64620 0 0 0 0 117
ASE_00228 0.00 0.00 0.00 0 46971 0 0 0 0 86
ASE_00229 0.00 0.00 0.00 0 42486 0 0 0 0 87
ASE_00231 0.00 0.00 0.00 0 47895 0 0 0 0 96
ASE_00232 0.00 0.00 0.00 0 38503 0 0 0 0 84
ASE_00234 0.00 0.00 0.00 0 75466 0 0 0 0 129
ASE_00238 0.00 0.00 0.00 0 64261 0 0 0 0 114
ASE_00241 0.00 0.00 0.00 0 43956 0 0 0 0 87
ASE_00254 0.00 0.00 0.00 0 36856 0 0 0 0 82
ASE_00255 0.00 0.00 0.00 0 74691 0 0 0 0 130
ASE_00257 0.00 0.00 0.00 0 51040 0 0 0 0 97
ASE_00263 0.00 0.00 0.00 0 70500 0 0 0 0 120
ASE_00267 0.00 0.00 0.00 0 45150 0 0 0 0 88
ASE_00270 0.00 0.00 0.00 0 72390 0 0 0 0 128
ASE_00274 0.00 0.00 0.00 0 55611 0 0 0 0 103
ASE_00277 0.00 0.00 0.00 0 48205 0 0 0 0 91
ASE_00279 0.00 0.00 0.00 0 53301 0 0 0 0 101
ASE_00280 0.00 0.00 0.00 0 52003 0 0 0 0 98
ASE_00282 0.00 0.00 0.00 0 77815 0 0 0 0 127
ASE_00283 0.00 0.00 0.00 0 61776 0 0 0 0 107
ASE_00284 0.00 0.00 0.00 0 58311 0 0 0 0 108
ASE_00285 0.00 0.00 0.00 0 69006 0 0 0 0 122
ASE_00286 0.00 0.00 0.00 0 46665 0 0 0 0 92
ASE_00287 0.00 0.00 0.00 0 54946 0 0 0 0 103
ASE_00292 0.00 0.00 0.00 0 81810 0 0 0 0 138
ASE_00294 0.00 0.00 0.00 0 114481 0 0 0 0 171
ASE_00296 0.00 0.00 0.00 0 91806 0 0 0 0 145
ASE_00297 0.00 0.00 0.00 0 52975 0 0 0 0 98
ASE_00298 0.00 0.00 0.00 0 67528 0 0 0 0 113
ASE_00328 0.00 0.00 0.00 0 72771 0 0 0 0 112
ASE_00332 0.00 0.00 0.00 0 81810 0 0 0 0 138
ASE_00340 0.00 0.00 0.00 0 46056 0 0 0 0 85
ASE_00342 0.00 0.00 0.00 0 62481 0 0 0 0 115
ASE_00361 0.00 0.00 0.00 0 75466 0 0 0 0 127
ASE_00362 0.00 0.00 0.00 0 48205 0 0 0 0 91
ASE_00363 0.00 0.00 0.00 0 51360 0 0 0 0 94
ASE_00364 0.00 0.00 0.00 0 54285 0 0 0 0 105
ASE_00366 0.00 0.00 0.00 0 58653 0 0 0 0 98
ASE_00367 0.00 0.00 0.00 0 43071 0 0 0 0 86
ASE_00369 0.00 0.00 0.00 0 55945 0 0 0 0 107
ASE_00370 0.00 0.00 0.00 0 41905 0 0 0 0 84
ASE_00372 0.00 0.00 0.00 0 52003 0 0 0 0 100
ASE_00374 0.00 0.00 0.00 0 44850 0 0 0 0 88
ASE_00376 0.00 0.00 0.00 0 56953 0 0 0 0 105
ASE_00379 0.00 0.00 0.00 0 46056 0 0 0 0 89
ASE_00382 0.00 0.00 0.00 0 41905 0 0 0 0 84
ASE_00383 0.00 0.00 0.00 0 54615 0 0 0 0 105
ASE_00384 0.00 0.00 0.00 0 48516 0 0 0 0 92
ASE_00386 0.00 0.00 0.00 0 50403 0 0 0 0 96
ASE_00387 0.00 0.00 0.00 0 55945 0 0 0 0 104
ASE_00388 0.00 0.00 0.00 0 45753 0 0 0 0 89
ASE_00390 0.00 0.00 0.00 0 42195 0 0 0 0 85
ASE_00393 0.00 0.00 0.00 0 47895 0 0 0 0 93
ASE_00394 0.00 0.00 0.00 0 46971 0 0 0 0 93
ASE_00395 0.00 0.00 0.00 0 41616 0 0 0 0 84
ASE_00396 0.00 0.00 0.00 0 41616 0 0 0 0 83
ASE_00397 0.00 0.00 0.00 0 54615 0 0 0 0 105
ASE_00398 0.00 0.00 0.00 0 55945 0 0 0 0 104
ASE_00400 0.00 0.00 0.00 0 57970 0 0 0 0 106
ASE_00401 0.00 0.00 0.00 0 77028 0 0 0 0 126
ASE_00402 0.00 0.00 0.00 0 42486 0 0 0 0 85
ASE_00403 0.00 0.00 0.00 0 55945 0 0 0 0 107
ASE_00404 0.00 0.00 0.00 0 43071 0 0 0 0 85
ASE_00411 0.00 0.00 0.00 0 49455 0 0 0 0 89
ASE_00413 0.00 0.00 0.00 0 44551 0 0 0 0 81
ASE_00415 0.00 0.00 0.00 0 54946 0 0 0 0 103
ASE_00416 0.00 0.00 0.00 0 77421 0 0 0 0 127
ASE_00419 0.00 0.00 0.00 0 54946 0 0 0 0 103
ASE_00422 0.00 0.00 0.00 0 46971 0 0 0 0 94
ASE_00428 0.00 0.00 0.00 0 76636 0 0 0 0 125
ASE_00430 0.00 0.00 0.00 0 46971 0 0 0 0 97
ASE_00437 0.00 0.00 0.00 0 79401 0 0 0 0 135
ASE_00441 0.00 0.00 0.00 0 64261 0 0 0 0 112
ASE_00448 0.00 0.00 0.00 0 64261 0 0 0 0 112
ASE_00451 0.00 0.00 0.00 0 70876 0 0 0 0 125
CRW_00298 0.00 0.00 0.00 0 1620900 0 0 0 0 494
CRW_00301 0.00 0.00 0.00 0 1762503 0 0 0 0 519
CRW_00310 0.00 0.00 0.00 0 1805950 0 0 0 0 521
CRW_00326 0.00 0.00 0.00 0 1628110 0 0 0 0 502
CRW_00330 0.00 0.00 0.00 0 1989015 0 0 0 0 517
CRW_00332 0.00 0.00 0.00 0 1770021 0 0 0 0 477
CRW_00333 0.00 0.00 0.00 0 1892485 0 0 0 0 514
CRW_00345 0.00 0.00 0.00 0 1586871 0 0 0 0 498
CRW_00348 0.00 0.00 0.00 0 1615503 0 0 0 0 503
CRW_00358 0.00 0.00 0.00 0 1675365 0 0 0 0 507
CRW_00366 0.00 0.00 0.00 0 1579753 0 0 0 0 482
CRW_00370 0.00 0.00 0.00 0 1640766 0 0 0 0 506
CRW_00371 0.00 0.00 0.00 0 1611910 0 0 0 0 496
CRW_00372 0.00 0.00 0.00 0 1626306 0 0 0 0 498
CRW_00379 0.00 0.00 0.00 0 2126953 0 0 0 0 534
CRW_00403 0.00 0.00 0.00 0 1606528 0 0 0 0 464
CRW_00411 0.00 0.00 0.00 0 1615503 0 0 0 0 496
CRW_00598 0.00 0.00 0.00 0 1666225 0 0 0 0 491
CRW_00758 0.00 0.00 0.00 0 1640766 0 0 0 0 483
CRW_00759 0.00 0.00 0.00 0 1637145 0 0 0 0 481
CRW_00760 0.00 0.00 0.00 0 1638955 0 0 0 0 486
CRW_00772 0.00 0.00 0.00 0 946000 0 0 0 0 404
CRW_01153 0.00 0.00 0.00 0 1606528 0 0 0 0 503
CRW_01171 0.00 0.00 0.00 0 1594005 0 0 0 0 506
CRW_01300 0.00 0.00 0.00 0 1693720 0 0 0 0 515
PDB_00571 -0.01 0.00 0.00 0 3302 20 3 16 1 25
PDB_00828 0.88 0.78 1.00 21 2464 0 0 0 0 6
PDB_00829 0.84 0.71 1.00 17 2261 0 0 0 0 7
RFA_00599 0.00 0.00 0.00 0 101475 0 0 0 0 111
RFA_00601 0.00 0.00 0.00 0 99235 0 0 0 0 114
RFA_00602 0.00 0.00 0.00 0 101475 0 0 0 0 116
TMR_00038 0.00 0.00 0.00 0 71253 0 0 0 0 110
TMR_00046 0.00 0.00 0.00 0 62835 0 0 0 0 96
TMR_00048 0.00 0.00 0.00 0 64980 0 0 0 0 95
TMR_00458 0.00 0.00 0.00 0 63546 0 0 0 0 93
TMR_00568 0.00 0.00 0.00 0 60726 0 0 0 0 99

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.