CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		PknotsRG
MCC	0.435	>	0.432
Average MCC ± 95% Confidence Intervals	0.457 ± 0.016	<	0.475 ± 0.017
Sensitivity	0.429	>	0.428
Positive Predictive Value	0.441	>	0.437
Total TP	36580	>	36474
Total TN	137717674	>	137717147
Total FP	55080	<	55267
Total FP CONTRA	7004	<	7168
Total FP INCONS	39372	<	39841
Total FP COMP	8704	>	8258
Total FN	48605	<	48711
P-value	1.47584956762e-07

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Performance plots

Comparison of performance of Afold and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and PknotsRG).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and PknotsRG).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and PknotsRG).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	36580
Total TN	137717674
Total FP	55080
Total FP CONTRA	7004
Total FP INCONS	39372
Total FP COMP	8704
Total FN	48605

Total Scores
MCC	0.435
Average MCC ± 95% Confidence Intervals	0.457 ± 0.016
Sensitivity	0.429
Positive Predictive Value	0.441
Nr of predictions	528

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.75	0.72	0.78	54	34122	23	3	12	8	21
ASE_00002	RNaseP_arch links to Rfam database...	0.62	0.62	0.63	45	35439	33	4	23	6	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.76	0.82	51	26044	13	0	11	2	16
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50965	74	6	51	17	46
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.59	81	104058	66	7	50	9	79
ASE_00023	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.69	81	84137	42	3	34	5	46
ASE_00028	RNaseP_bact_b links to Rfam database...	0.58	0.56	0.61	70	84551	54	4	41	9	56
ASE_00029	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.56	65	82912	55	5	46	4	57
ASE_00030	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	85	85357	50	5	44	1	60
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	62	80094	50	6	38	6	56
ASE_00033	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.36	38	64874	70	4	64	2	83
ASE_00036	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	52	75735	71	8	60	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	61	89969	73	3	67	3	84
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00046	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	50313	33	2	31	0	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	50	74188	68	4	63	1	80
ASE_00053	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	69	79278	61	12	42	7	64
ASE_00056	-	0.34	0.35	0.34	25	30803	52	4	44	4	47
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	71	72269	52	4	46	2	59
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	95	108679	46	3	34	9	67
ASE_00076	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	64	68160	42	7	34	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	55519	45	2	42	1	52
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00087	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	74	88288	54	5	43	6	70
ASE_00089	-	0.39	0.37	0.41	29	31305	45	0	41	4	50
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	57	63439	51	2	48	1	58
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00111	RNaseP_nuc links to Rfam database...	0.15	0.19	0.12	11	49992	89	31	52	6	46
ASE_00112	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	75364	25	5	13	7	32
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.24	0.23	16	31557	54	8	45	1	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00120	RNaseP_arch links to Rfam database...	0.37	0.35	0.38	33	46885	53	9	44	0	61
ASE_00121	RNaseP_arch links to Rfam database...	0.29	0.29	0.29	27	45058	65	8	57	0	65
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	24	43283	60	4	54	2	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	61	40387	27	3	19	5	21
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	58	50314	34	7	24	3	37
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00139	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	80	54195	16	2	8	6	24
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00145	RNaseP_arch links to Rfam database...	0.40	0.40	0.40	44	70016	69	9	56	4	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00148	RNaseP_arch links to Rfam database...	0.63	0.60	0.65	93	112433	53	4	45	4	61
ASE_00151	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	25	51912	66	9	57	0	73
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00154	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	59	65240	45	4	38	3	48
ASE_00155	RNaseP_arch links to Rfam database...	0.50	0.48	0.52	68	93396	69	10	54	5	74
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	88	24	47	17	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	51	57192	52	6	42	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.64	61	59936	38	5	29	4	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	79	84128	49	6	42	1	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61316	35	2	28	5	34
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00187	RNaseP_arch links to Rfam database...	0.50	0.48	0.51	55	68528	58	7	45	6	60
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.40	0.38	0.42	50	84547	75	6	63	6	83
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.75	0.77	56	31553	21	2	15	4	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00198	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	60	52556	40	6	28	6	42
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00209	RNaseP_arch links to Rfam database...	0.29	0.28	0.30	25	42989	57	4	53	0	63
ASE_00210	RNaseP_arch links to Rfam database...	0.61	0.62	0.60	40	27194	28	6	21	1	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	99	93827	39	3	32	4	49
ASE_00213	RNaseP_arch links to Rfam database...	0.72	0.71	0.73	47	27197	18	3	14	1	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00222	RNaseP_arch links to Rfam database...	0.56	0.55	0.56	87	111947	68	8	59	1	70
ASE_00227	RNaseP_bact_a links to Rfam database...	0.25	0.23	0.27	31	78888	84	6	78	0	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45676	92	25	52	15	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00240	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	52	46578	44	4	31	9	41
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00246	RNaseP_nuc links to Rfam database...	0.30	0.33	0.27	22	48123	71	17	43	11	45
ASE_00247	RNaseP_nuc links to Rfam database...	0.18	0.19	0.17	12	54213	88	15	45	28	52
ASE_00252	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	88	115284	71	5	63	3	80
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.79	0.90	79	49053	24	0	9	15	21
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	42	45969	48	6	39	3	51
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	97	100886	45	4	38	3	60
ASE_00291	-	0.38	0.36	0.40	34	48430	53	9	43	1	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	80	81689	43	2	39	2	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	117	114335	32	2	27	3	54
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	79	73801	42	8	32	2	52
ASE_00296	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.27	35	91676	98	8	87	3	110
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	49361	54	5	41	8	52
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	63	62396	45	4	18	23	26
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	64	56193	44	3	20	21	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	75	81682	55	2	51	2	63
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39265	50	6	31	13	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.63	0.72	62	66344	41	4	20	17	36
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00343	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.34	39	83321	88	9	67	12	74
ASE_00346	RNaseP_arch links to Rfam database...	0.31	0.30	0.32	29	48114	65	7	55	3	68
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	49	3	38	8	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00375	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	60280	31	1	24	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	54	54854	41	2	36	3	45
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	53	6	45	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00408	-	0.48	0.48	0.49	34	32316	41	2	33	6	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38701	67	12	52	3	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00426	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	30	60967	78	7	71	0	78
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00429	-	0.43	0.44	0.43	29	28136	40	8	30	2	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00431	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.56	47	46276	41	6	31	4	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.62	66	68159	48	7	33	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00438	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	50	65965	52	3	48	1	66
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	60274	55	1	51	3	64
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
CRW_00002	-	0.55	0.55	0.55	145	408798	132	32	85	15	119
CRW_00004	-	0.45	0.46	0.45	60	154156	110	10	64	36	71
CRW_00005	-	0.55	0.55	0.55	73	137943	86	13	46	27	59
CRW_00007	-	0.33	0.36	0.30	48	144832	112	35	76	1	85
CRW_00009	-	0.58	0.59	0.57	81	137934	83	9	51	23	57
CRW_00010	-	0.78	0.78	0.79	98	102707	45	6	20	19	28
CRW_00011	-	0.68	0.70	0.66	97	118194	63	7	43	13	41
CRW_00013	Intron_gpI links to Rfam database...	0.22	0.22	0.22	25	103625	113	13	77	23	90
CRW_00014	-	0.49	0.48	0.50	59	103621	74	10	50	14	64
CRW_00016	Intron_gpI links to Rfam database...	0.65	0.62	0.69	74	77313	47	5	29	13	46
CRW_00017	-	0.38	0.42	0.34	38	92124	95	19	54	22	53
CRW_00019	-	0.74	0.77	0.71	105	127617	51	15	28	8	32
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.77	0.79	351	1085158	132	17	75	40	107
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	228	1170758	252	20	209	23	242
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	208	1107368	260	31	209	20	248
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	240	1172289	233	26	191	16	233
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	259	1181483	231	27	184	20	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	226	1108849	247	24	206	17	231
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	214	1178420	264	32	214	18	251
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.63	0.64	291	1135826	182	20	141	21	172
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	274	1201566	212	26	159	27	202
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	193	1152465	282	35	228	19	273
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	293	1179965	180	30	128	22	178
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	248	1190745	226	28	175	23	220
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	127	1082216	323	37	276	10	318
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1178433	259	22	222	15	270
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.48	220	1207772	267	24	219	24	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	266	1198467	216	21	172	23	212
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1105880	289	44	232	13	281
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	274	1218666	234	21	180	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.45	210	1198459	274	34	223	17	268
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	188	1192291	278	39	222	17	280
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	196	1111850	260	40	200	20	259
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	231	1122302	237	43	175	19	231
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	258	1085174	195	26	143	26	188
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.48	213	1114826	258	28	204	26	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1110338	300	45	240	15	281
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	274	33	218	23	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	229	1179985	227	29	173	25	235
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	227	1117817	231	28	188	15	226
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	347	41	290	16	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	118	1015612	321	39	256	26	314
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.28	124	1131316	337	30	290	17	332
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.72	0.71	0.74	325	1117819	142	23	93	26	133
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.48	214	1189204	258	34	201	23	262
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123814	315	46	252	17	323
CRW_00338	-	0.13	0.14	0.12	57	1052947	427	76	346	5	338
CRW_00381	-	0.32	0.33	0.31	184	2303138	513	67	342	104	373
CRW_00417	-	0.38	0.37	0.39	97	458157	161	21	128	12	165
CRW_00418	-	0.24	0.22	0.26	56	441113	170	17	144	9	204
CRW_00419	-	0.19	0.17	0.20	45	463945	187	22	154	11	220
CRW_00421	-	0.38	0.36	0.41	96	462968	155	22	117	16	170
CRW_00422	-	0.36	0.35	0.38	92	455291	171	23	129	19	171
CRW_00423	-	0.20	0.21	0.19	40	242347	179	28	141	10	149
CRW_00426	-	0.30	0.29	0.31	78	457195	183	24	149	10	187
CRW_00427	-	0.18	0.18	0.19	46	454337	212	30	168	14	215
CRW_00428	-	0.39	0.38	0.40	98	465847	162	29	121	12	162
CRW_00429	-	0.16	0.16	0.16	37	306704	200	45	150	5	196
CRW_00430	-	0.18	0.18	0.19	47	456245	207	30	168	9	219
CRW_00433	-	0.35	0.32	0.38	85	467807	142	19	117	6	178
CRW_00434	-	0.38	0.35	0.40	92	457218	146	18	118	10	171
CRW_00435	-	0.36	0.33	0.39	88	451501	148	14	122	12	177
CRW_00437	-	0.21	0.21	0.22	54	456242	197	25	169	3	206
CRW_00438	-	0.35	0.34	0.36	90	454332	170	19	140	11	178
CRW_00441	-	0.17	0.16	0.19	42	454357	187	31	151	5	220
CRW_00442	-	0.37	0.36	0.39	93	453388	156	25	122	9	168
CRW_00443	-	0.39	0.36	0.42	93	456266	153	18	113	22	167
CRW_00444	-	0.27	0.26	0.28	68	459119	181	24	150	7	195
CRW_00445	-	0.28	0.27	0.30	71	458168	175	24	140	11	194
CRW_00446	-	0.46	0.43	0.48	115	468758	135	14	109	12	150
CRW_00447	-	0.27	0.27	0.28	69	452428	194	23	156	15	191
CRW_00448	-	0.34	0.32	0.36	83	457215	169	23	125	21	178
CRW_00449	-	0.22	0.21	0.23	54	444861	185	20	161	4	206
CRW_00451	-	0.21	0.20	0.21	52	457204	204	25	165	14	212
CRW_00452	-	0.31	0.29	0.34	77	453399	174	20	132	22	185
CRW_00453	-	0.34	0.31	0.36	81	452454	150	22	119	9	180
CRW_00458	-	0.32	0.31	0.32	83	464873	185	34	140	11	181
CRW_00459	-	0.29	0.27	0.31	72	462011	176	27	131	18	191
CRW_00462	-	0.28	0.27	0.30	70	458171	178	16	146	16	191
CRW_00463	-	0.34	0.33	0.35	85	445799	164	22	134	8	169
CRW_00464	-	0.39	0.36	0.42	95	462015	142	15	116	11	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.62	268	1116330	196	21	146	29	190
CRW_00530	-	0.35	0.37	0.33	99	534792	223	55	149	19	169
CRW_00535	-	0.25	0.27	0.24	89	898092	316	73	216	27	239
CRW_00538	-	0.20	0.22	0.19	65	811827	304	77	206	21	235
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	374	34	324	16	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	161	1119326	290	30	239	21	291
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.59	251	1098476	205	23	153	29	195
CRW_00594	-	0.22	0.24	0.20	93	1028441	382	52	309	21	302
CRW_00596	-	0.21	0.22	0.21	86	1024181	349	55	274	20	300
CRW_00604	-	0.52	0.57	0.48	46	411682	214	15	35	164	35
CRW_00605	-	0.54	0.54	0.54	38	183850	134	11	22	101	32
CRW_00606	-	0.66	0.64	0.68	59	559066	266	2	26	238	33
CRW_00607	-	0.55	0.53	0.56	41	536057	274	4	28	242	36
CRW_00608	-	0.77	0.76	0.79	60	35702	26	2	14	10	19
CRW_00610	Intron_gpI links to Rfam database...	0.42	0.42	0.43	34	36235	46	6	40	0	47
CRW_00612	-	0.63	0.61	0.66	57	270393	172	1	29	142	36
CRW_00613	Intron_gpI links to Rfam database...	0.46	0.42	0.51	33	34915	41	2	30	9	45
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	141	24	53	64	52
CRW_00617	-	0.66	0.64	0.68	41	426366	236	1	18	217	23
CRW_00619	Intron_gpI links to Rfam database...	0.38	0.42	0.34	31	164933	138	25	36	77	42
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.12	13	150869	161	32	61	68	50
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153108	157	13	53	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.29	0.32	24	129719	123	11	41	71	59
CRW_00626	-	0.61	0.64	0.57	67	100908	69	18	32	19	37
CRW_00629	-	0.55	0.55	0.55	67	91256	57	16	39	2	55
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.44	0.47	47	63445	58	10	44	4	59
CRW_00635	-	0.47	0.45	0.48	62	109150	78	9	57	12	75
CRW_00637	-	0.30	0.30	0.31	48	133746	117	16	93	8	110
CRW_00641	-	0.65	0.66	0.65	50	39826	37	6	21	10	26
CRW_00642	-	0.48	0.52	0.44	34	47201	52	9	34	9	31
CRW_00643	-	0.42	0.45	0.39	55	123114	99	29	58	12	67
CRW_00645	-	0.79	0.84	0.75	56	35436	30	8	11	11	11
CRW_00646	-	0.87	0.84	0.90	54	34920	25	0	6	19	10
CRW_00648	-	0.61	0.64	0.59	94	137915	75	17	49	9	54
CRW_00649	-	0.73	0.74	0.72	92	204352	114	3	33	78	32
CRW_00650	-	0.46	0.46	0.46	65	112909	82	6	70	6	77
CRW_00652	-	0.65	0.67	0.63	87	132217	74	8	43	23	43
CRW_00654	-	0.70	0.68	0.72	84	78094	38	4	28	6	40
CRW_00655	-	0.70	0.69	0.71	86	89132	38	9	26	3	38
CRW_00659	-	0.37	0.41	0.33	25	32310	56	15	35	6	36
CRW_00661	-	0.20	0.22	0.19	11	24251	51	16	32	3	40
CRW_00662	-	0.31	0.31	0.32	20	28618	48	2	40	6	45
CRW_00663	-	0.14	0.15	0.13	9	26039	61	6	52	3	52
CRW_00664	-	0.05	0.05	0.04	4	53536	92	20	68	4	74
CRW_00665	-	0.17	0.19	0.16	9	23596	56	11	37	8	39
CRW_00666	-	0.51	0.52	0.50	65	96011	78	11	54	13	61
CRW_00668	-	0.35	0.37	0.34	56	163711	127	20	91	16	94
CRW_00669	-	0.51	0.50	0.52	59	97348	65	15	39	11	60
CRW_00670	Intron_gpI links to Rfam database...	0.77	0.74	0.81	89	70015	26	0	21	5	31
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.64	0.68	75	62725	41	8	27	6	42
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.73	0.74	81	72281	36	10	18	8	30
CRW_00674	Intron_gpI links to Rfam database...	0.55	0.55	0.55	68	83312	61	8	48	5	56
CRW_00676	Intron_gpI links to Rfam database...	0.54	0.56	0.52	64	93406	75	17	41	17	51
CRW_00677	-	0.53	0.53	0.52	56	71902	60	13	39	8	49
CRW_00678	-	0.66	0.64	0.67	78	666318	274	10	29	235	43
CRW_00679	-	0.22	0.22	0.22	24	76525	94	14	73	7	83
CRW_00681	-	0.46	0.50	0.42	56	112918	93	19	57	17	56
CRW_00684	-	0.34	0.39	0.29	53	611990	298	44	84	170	82
CRW_00685	-	0.38	0.42	0.34	44	156952	121	20	64	37	62
CRW_00687	-	0.68	0.74	0.63	49	28602	34	8	21	5	17
CRW_00689	-	0.70	0.71	0.68	55	33589	29	11	15	3	22
CRW_00690	-	0.65	0.65	0.65	45	33342	32	6	18	8	24
CRW_00691	-	0.53	0.57	0.50	38	27185	41	4	34	3	29
CRW_00692	Intron_gpI links to Rfam database...	0.57	0.57	0.57	51	68545	54	15	24	15	39
CRW_00693	-	0.58	0.57	0.58	70	89133	61	7	43	11	52
CRW_00694	-	0.63	0.63	0.63	77	85782	53	6	40	7	45
CRW_00699	-	0.65	0.61	0.69	77	91694	39	3	32	4	49
CRW_00700	-	0.70	0.70	0.70	103	180753	77	11	34	32	44
CRW_00704	-	0.81	0.80	0.82	75	386669	198	4	12	182	19
CRW_00706	-	0.45	0.51	0.39	30	695534	340	11	35	294	29
CRW_00710	-	0.66	0.65	0.67	74	1040293	375	8	28	339	40
CRW_00712	-	0.47	0.54	0.41	58	952747	370	30	55	285	50
CRW_00713	-	0.56	0.57	0.55	58	731339	313	11	37	265	43
CRW_00714	-	0.20	0.22	0.18	24	186222	163	28	81	54	83
CRW_00715	-	0.63	0.60	0.66	62	69284	36	8	24	4	42
CRW_00716	-	0.35	0.35	0.34	31	193663	149	10	49	90	58
CRW_00717	-	0.68	0.66	0.69	98	153593	64	7	37	20	50
CRW_00718	-	0.79	0.75	0.82	144	189860	51	3	29	19	47
CRW_00719	-	0.42	0.43	0.41	39	230086	160	13	43	104	52
CRW_00721	-	0.52	0.60	0.46	41	58563	65	19	30	16	27
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	165	1215603	304	24	228	52	281
CRW_00764	-	0.04	0.05	0.04	9	252909	203	35	163	5	187
CRW_00766	-	0.27	0.26	0.28	63	440168	177	20	140	17	177
CRW_00768	-	0.40	0.39	0.41	101	471658	164	22	125	17	158
CRW_00769	-	0.39	0.37	0.42	93	451502	148	20	110	18	159
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	103	945610	313	37	250	26	301
CRW_00774	-	0.37	0.36	0.39	94	488322	170	17	133	20	169
CRW_00775	-	0.12	0.13	0.11	28	314576	220	60	157	3	184
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.30	0.29	0.32	113	1201668	314	34	210	70	271
CRW_00779	-	0.30	0.30	0.30	126	1031350	307	35	255	17	296
CRW_00780	-	0.18	0.18	0.19	45	475569	201	21	165	15	210
CRW_00783	-	0.37	0.36	0.38	93	453382	165	15	138	12	166
CRW_00784	-	0.37	0.35	0.39	93	456254	166	21	122	23	169
CRW_00785	-	0.35	0.33	0.36	84	452443	162	27	122	13	169
CRW_00787	-	0.23	0.24	0.23	74	646626	267	36	217	14	232
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	160	1137342	302	44	240	18	287
CRW_00793	-	0.33	0.34	0.33	127	1048686	318	55	208	55	250
CRW_00794	-	0.24	0.24	0.25	59	434543	196	15	161	20	187
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.21	0.22	0.21	85	1152511	379	51	274	54	309
CRW_00796	-	0.20	0.20	0.21	47	384777	193	27	152	14	188
CRW_00797	-	0.26	0.26	0.26	90	692907	280	33	223	24	252
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.53	0.57	251	1401532	269	24	168	77	219
CRW_00801	-	0.45	0.45	0.46	112	438270	149	29	105	15	137
CRW_00802	-	0.19	0.19	0.19	49	460062	218	33	176	9	204
CRW_00807	-	0.41	0.40	0.41	161	1391552	340	38	195	107	237
CRW_00808	-	0.37	0.39	0.35	139	1301292	367	81	179	107	217
CRW_00815	-	0.71	0.72	0.72	113	159737	54	11	34	9	45
CRW_00816	-	0.36	0.36	0.35	47	143781	108	18	70	20	82
CRW_00820	-	0.57	0.58	0.56	84	136352	77	16	51	10	61
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.49	227	1117798	259	23	212	24	243
CRW_01134	-	0.25	0.26	0.25	109	964912	341	41	293	7	318
CRW_01168	-	0.39	0.39	0.39	160	900739	274	33	221	20	251
CRW_01186	-	0.27	0.27	0.27	103	836190	293	44	234	15	283
CRW_01188	-	0.17	0.17	0.17	68	837466	339	48	283	8	325
CRW_01189	-	0.21	0.21	0.21	82	862242	334	47	270	17	310
CRW_01214	-	0.29	0.29	0.29	116	931900	288	36	243	9	289
CRW_01222	-	0.23	0.23	0.23	92	912871	321	54	259	8	305
CRW_01250	-	0.31	0.30	0.32	115	781518	257	33	209	15	263
CRW_01260	-	0.15	0.15	0.15	60	912885	340	48	283	9	333
CRW_01266	-	0.28	0.28	0.28	108	818174	292	43	235	14	273
CRW_01275	-	0.30	0.30	0.30	128	1082230	316	45	253	18	304
CRW_01283	-	0.40	0.40	0.40	163	963560	265	37	206	22	246
CRW_01314	-	0.28	0.27	0.29	110	937386	284	37	232	15	297
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.37	160	977470	284	42	229	13	274
CRW_01344	-	0.30	0.30	0.30	110	791545	267	40	216	11	256
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00056	-	-0.02	0.00	0.00	0	618	12	0	12	0	16
PDB_00072	-	0.35	0.35	0.35	73	148033	136	10	124	2	137
PDB_00078	-	0.47	0.45	0.50	52	49665	53	6	47	0	63
PDB_00079	-	0.65	0.62	0.69	88	121643	69	9	31	29	54
PDB_00123	-	-0.01	0.00	0.00	0	4150	36	0	36	0	36
PDB_00138	-	0.72	0.63	0.83	5	372	1	0	1	0	3
PDB_00209	-	-0.02	0.00	0.00	0	551	10	2	8	0	11
PDB_00243	-	0.67	0.58	0.78	7	621	3	0	2	1	5
PDB_00278	-	0.13	0.13	0.13	9	24907	60	6	54	0	63
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00403	-	0.49	0.50	0.48	76	124590	93	16	68	9	77
PDB_00423	-	0.07	0.07	0.07	5	26723	68	7	61	0	69
PDB_00447	-	0.41	0.36	0.47	16	7106	18	6	12	0	28
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3302	20	5	14	1	25
PDB_00701	-	0.47	0.46	0.49	50	45348	54	5	48	1	59
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073408	220	17	174	29	249
PDB_00713	-	0.24	0.24	0.25	5	1996	15	0	15	0	16
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	25	1	23	1	23
PDB_00747	-	0.68	0.61	0.77	49	24467	15	0	15	0	31
PDB_00805	-	0.64	0.61	0.67	184	467752	116	18	74	24	118
PDB_00827	Intron_gpI links to Rfam database...	0.67	0.59	0.76	48	26965	16	0	15	1	33
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.82	0.71	0.94	17	2260	1	0	1	0	7
PDB_00874	-	-0.02	0.00	0.00	0	931	15	0	15	0	20
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00917	-	0.49	0.47	0.51	45	35157	49	4	39	6	50
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	48	44163	45	3	39	3	55
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01070	-	0.31	0.30	0.33	16	12671	33	2	31	0	38
PDB_01092	glmS links to Rfam database...	0.69	0.60	0.79	31	10114	11	1	7	3	21
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.63	313	1433471	221	15	172	34	227
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	228	1204659	250	31	210	9	299
PDB_01129	-	0.27	0.28	0.26	20	35433	64	15	43	6	51
PDB_01157	-	0.26	0.24	0.27	24	49998	64	11	53	0	74
PDB_01166	-	0.42	0.41	0.44	86	181912	115	21	87	7	126
PDB_01260	-	-0.01	0.00	0.00	0	1809	21	0	21	0	25
PDB_01261	-	0.50	0.45	0.55	152	467752	128	4	120	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	237	1117812	242	21	190	31	254
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	-0.01	0.00	0.00	0	893	10	2	8	0	15
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
RFA_00597	Telomerase-vert links to Rfam database...	0.51	0.51	0.51	56	97794	82	5	48	29	53
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.64	78	101353	66	16	28	22	33
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.11	0.08	12	99092	139	35	96	8	102
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	62	101344	91	18	51	22	54
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	18	0	16	2	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	17	2	14	1	16
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	5	0	4	1	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	10	3	5	2	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	6	0	2	4	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	5	1	0	4	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	16	2	13	1	16
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	12	1	10	1	10
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71140	89	12	73	4	82
TMR_00046	tmRNA links to Rfam database...	0.47	0.48	0.46	46	62734	61	10	45	6	50
TMR_00047	tmRNA links to Rfam database...	0.25	0.30	0.22	17	48438	76	16	45	15	40
TMR_00048	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64876	73	9	60	4	60
TMR_00049	tmRNA links to Rfam database...	0.50	0.52	0.49	45	63098	59	9	38	12	42
TMR_00051	tmRNA links to Rfam database...	0.54	0.51	0.57	48	65619	56	2	34	20	46
TMR_00055	tmRNA links to Rfam database...	0.06	0.07	0.06	8	78870	125	25	100	0	106
TMR_00064	tmRNA links to Rfam database...	0.38	0.38	0.38	39	76925	72	19	45	8	64
TMR_00073	tmRNA links to Rfam database...	0.40	0.39	0.40	46	65588	70	7	62	1	71
TMR_00076	tmRNA links to Rfam database...	0.26	0.27	0.25	27	70768	87	15	66	6	73
TMR_00106	tmRNA links to Rfam database...	0.35	0.37	0.34	44	89969	91	20	67	4	76
TMR_00144	tmRNA links to Rfam database...	0.20	0.21	0.19	22	74189	96	15	79	2	81
TMR_00150	tmRNA links to Rfam database...	0.64	0.64	0.64	27	43029	50	2	13	35	15
TMR_00179	tmRNA links to Rfam database...	0.31	0.33	0.29	32	67050	85	14	65	6	66
TMR_00199	tmRNA links to Rfam database...	0.48	0.49	0.47	45	62740	57	21	29	7	47
TMR_00223	tmRNA links to Rfam database...	0.19	0.20	0.18	19	64158	88	22	62	4	76
TMR_00238	tmRNA links to Rfam database...	0.14	0.15	0.13	15	84553	106	15	83	8	86
TMR_00239	tmRNA links to Rfam database...	0.47	0.48	0.46	46	61676	57	11	43	3	50
TMR_00246	-	0.49	0.56	0.43	19	78166	109	5	20	84	15
TMR_00274	tmRNA links to Rfam database...	0.31	0.32	0.31	34	66684	83	11	66	6	71
TMR_00279	tmRNA links to Rfam database...	0.50	0.51	0.49	48	68908	60	10	40	10	46
TMR_00283	tmRNA links to Rfam database...	0.39	0.42	0.37	40	65233	71	19	49	3	56
TMR_00310	tmRNA links to Rfam database...	0.56	0.56	0.56	55	63805	48	9	34	5	43
TMR_00317	tmRNA links to Rfam database...	0.56	0.57	0.55	58	68160	50	14	33	3	44
TMR_00352	tmRNA links to Rfam database...	0.42	0.45	0.39	34	95179	91	17	36	38	41
TMR_00409	tmRNA links to Rfam database...	0.65	0.70	0.60	32	68582	75	7	14	54	14
TMR_00411	tmRNA links to Rfam database...	0.18	0.18	0.17	16	60983	83	14	62	7	71
TMR_00415	tmRNA links to Rfam database...	0.26	0.26	0.25	26	67059	76	13	63	0	75
TMR_00419	tmRNA links to Rfam database...	0.39	0.39	0.40	43	81703	83	10	54	19	68
TMR_00422	tmRNA links to Rfam database...	0.46	0.49	0.44	45	67793	67	14	44	9	47
TMR_00458	tmRNA links to Rfam database...	0.22	0.22	0.23	20	63458	76	7	61	8	73
TMR_00478	tmRNA links to Rfam database...	0.12	0.13	0.12	13	71900	100	29	68	3	86
TMR_00553	tmRNA links to Rfam database...	0.39	0.38	0.39	31	48126	54	7	41	6	50
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	67	6	53	8	57
TMR_00568	tmRNA links to Rfam database...	0.57	0.57	0.58	56	60629	50	3	38	9	43
TMR_00579	tmRNA links to Rfam database...	0.22	0.26	0.20	23	80485	102	21	72	9	67
TMR_00581	tmRNA links to Rfam database...	0.14	0.14	0.13	14	62376	98	9	82	7	84
TMR_00587	tmRNA links to Rfam database...	0.69	0.68	0.71	68	61329	33	4	24	5	32
TMR_00588	tmRNA links to Rfam database...	0.24	0.25	0.23	25	77311	94	24	61	9	76
TMR_00594	tmRNA links to Rfam database...	0.20	0.20	0.20	21	79294	90	15	71	4	83
TMR_00596	tmRNA links to Rfam database...	0.14	0.15	0.14	14	78107	99	16	73	10	81
TMR_00600	tmRNA links to Rfam database...	0.14	0.14	0.14	16	79684	100	18	82	0	99
TMR_00603	tmRNA links to Rfam database...	0.54	0.56	0.52	24	60332	82	7	15	60	19
TMR_00606	tmRNA links to Rfam database...	0.37	0.36	0.37	39	68900	77	5	62	10	68
TMR_00625	tmRNA links to Rfam database...	0.20	0.21	0.19	22	78889	96	28	64	4	84
TMR_00706	tmRNA links to Rfam database...	0.50	0.50	0.50	51	66328	55	6	45	4	52
TMR_00712	tmRNA links to Rfam database...	0.18	0.18	0.18	20	78497	101	14	75	12	89

^top

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	36474
Total TN	137717147
Total FP	55267
Total FP CONTRA	7168
Total FP INCONS	39841
Total FP COMP	8258
Total FN	48711

Total Scores
MCC	0.432
Average MCC ± 95% Confidence Intervals	0.475 ± 0.017
Sensitivity	0.428
Positive Predictive Value	0.437
Nr of predictions	528

^top

2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.64	46	34119	33	3	23	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.50	0.49	0.51	36	35440	40	5	30	5	37
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.70	69	47796	32	9	21	2	28
ASE_00005	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	68	57870	38	0	32	6	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.57	54	47491	44	7	34	3	39
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.61	60	59586	43	1	38	4	50
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	50	26045	13	0	11	2	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.61	67	73811	49	2	40	7	56
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.14	0.16	0.13	10	50964	85	8	58	19	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	66	73796	58	8	50	0	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	86	104056	61	7	47	7	74
ASE_00023	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	84131	47	5	39	3	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.56	0.61	71	84550	53	4	41	8	55
ASE_00029	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	66	82916	48	4	42	2	56
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.68	90	85358	45	3	40	2	55
ASE_00032	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	64	80094	47	6	36	5	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	58	64879	45	5	38	2	63
ASE_00036	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	59	75731	68	8	57	3	73
ASE_00037	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	25	59239	79	3	73	3	85
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	53529	45	4	40	1	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	63	78882	64	5	53	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	54	57532	48	2	42	4	54
ASE_00042	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.58	72	89975	54	3	50	1	73
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54513	35	3	28	4	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	59	50317	27	2	25	0	44
ASE_00047	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	40	74190	76	5	70	1	90
ASE_00053	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	77	79273	54	5	46	3	56
ASE_00056	-	0.33	0.33	0.32	24	30802	53	6	44	3	48
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	83	72273	35	4	30	1	47
ASE_00068	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	20	37596	59	5	54	0	65
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	68	67781	47	6	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	96	108676	46	2	37	7	66
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	67	68158	42	2	38	2	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.25	21	45067	67	7	55	5	65
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	50	55517	44	5	39	0	50
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	54	71519	61	5	53	3	69
ASE_00081	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	51	49676	44	5	38	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	54	70400	60	1	45	14	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	26	2	15	9	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53534	29	6	20	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	83	88283	49	5	39	5	61
ASE_00089	-	0.29	0.28	0.30	22	31302	52	1	50	1	57
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	79	63442	30	0	25	5	34
ASE_00096	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	63437	58	4	51	3	61
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	75	64151	36	3	32	1	44
ASE_00111	RNaseP_nuc links to Rfam database...	0.14	0.18	0.11	10	49998	88	24	54	10	47
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	87	75362	23	5	12	6	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	47	54520	56	1	47	8	54
ASE_00116	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	13	31558	58	2	53	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	45	60627	57	4	50	3	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00120	RNaseP_arch links to Rfam database...	0.35	0.34	0.36	32	46883	56	9	47	0	62
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45061	68	9	57	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.28	24	43280	61	4	57	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	33	38424	50	2	44	4	52
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.78	65	40387	21	3	15	3	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	73	53210	25	2	16	7	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.72	49	39272	29	0	19	10	36
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	60	50315	30	4	24	2	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.55	54	50305	49	4	40	5	41
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	50	63085	59	8	47	4	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	43	48121	50	1	40	9	49
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	5	46	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00139	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	76	54199	15	2	8	5	28
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	81	70767	33	3	25	5	44
ASE_00145	RNaseP_arch links to Rfam database...	0.43	0.42	0.44	47	70019	64	6	53	5	64
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70775	47	0	44	3	67
ASE_00148	RNaseP_arch links to Rfam database...	0.70	0.67	0.73	103	112433	42	4	35	3	51
ASE_00151	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	40	51911	52	12	40	0	58
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	71	2	27	42	28
ASE_00154	RNaseP_arch links to Rfam database...	0.64	0.63	0.65	67	65238	39	4	32	3	40
ASE_00155	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	71	93391	71	10	56	5	71
ASE_00163	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	53211	72	7	56	9	66
ASE_00165	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	56	52881	39	7	31	1	45
ASE_00168	RNaseP_nuc links to Rfam database...	0.23	0.28	0.19	18	60629	92	25	54	13	46
ASE_00169	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	52	57190	53	7	42	4	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48741	25	2	22	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48425	25	5	20	0	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	70	58896	35	4	26	5	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	56	60980	39	3	36	0	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	47	59926	62	6	52	4	60
ASE_00176	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	61	59934	39	5	31	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	64	84129	65	6	56	3	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.65	75	73420	43	5	36	2	53
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	92	78885	31	3	23	5	40
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	57	68526	57	7	45	5	58
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.47	40	45366	45	8	37	0	50
ASE_00192	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	59	84544	69	10	53	6	74
ASE_00196	RNaseP_arch links to Rfam database...	0.70	0.69	0.71	52	31553	24	2	19	3	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	66	89124	66	4	59	3	79
ASE_00198	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	52551	45	6	39	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	65	46575	29	6	19	4	31
ASE_00209	RNaseP_arch links to Rfam database...	0.28	0.27	0.29	24	42989	58	4	54	0	64
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	28	6	21	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	77	93822	66	5	57	4	71
ASE_00213	RNaseP_arch links to Rfam database...	0.73	0.73	0.73	48	27195	19	6	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	78	56182	28	3	17	8	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	52	48425	42	4	35	3	47
ASE_00216	RNaseP_bact_a links to Rfam database...	0.60	0.61	0.60	50	39256	36	8	26	2	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	45	64514	65	3	58	4	72
ASE_00222	RNaseP_arch links to Rfam database...	0.62	0.60	0.64	94	111954	55	9	44	2	63
ASE_00227	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.33	39	78884	80	5	75	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	51	46883	37	14	23	0	35
ASE_00229	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	50	42401	39	5	30	4	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	66	47801	28	5	23	0	30
ASE_00232	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	46	38422	38	3	32	3	38
ASE_00234	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	63	75351	56	2	50	4	66
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45672	99	25	56	18	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	64152	58	4	51	3	60
ASE_00240	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	58	46577	37	2	28	7	35
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	47	43875	43	0	34	9	40
ASE_00246	RNaseP_nuc links to Rfam database...	0.16	0.18	0.15	12	48124	82	19	50	13	55
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54210	91	16	47	28	52
ASE_00252	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	94	115289	62	5	52	5	74
ASE_00254	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	49	36778	33	5	24	4	33
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	62	50944	34	0	34	0	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.78	0.90	78	49054	24	0	9	15	22
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	39	45069	51	5	37	9	49
ASE_00270	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	79	72267	45	8	36	1	49
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	48	55515	48	8	40	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	48113	58	9	47	2	55
ASE_00279	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	36	53213	58	1	51	6	65
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	52	77692	72	6	65	1	75
ASE_00283	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	78	61673	27	5	20	2	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	43	4	32	7	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	71	68899	43	2	34	7	51
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54855	40	0	34	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	42	45968	47	3	43	1	51
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	98	100886	44	4	37	3	59
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	34	4	25	5	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00295	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	65	73805	53	5	45	3	66
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	43	91677	88	8	78	2	102
ASE_00297	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	52	52878	50	3	42	5	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	21	67420	90	9	78	3	92
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	55	49357	48	8	35	5	45
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.72	0.73	64	62393	46	6	18	22	25
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	73	3	63	7	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.75	0.74	0.75	67	56191	42	3	19	20	23
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	71	81686	59	2	51	6	67
ASE_00337	RNaseP_nuc links to Rfam database...	0.36	0.37	0.36	26	39268	58	4	42	12	45
ASE_00338	RNaseP_nuc links to Rfam database...	0.72	0.69	0.74	68	66338	41	7	17	17	30
ASE_00340	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.71	61	45970	34	7	18	9	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	52	62378	51	1	50	0	63
ASE_00343	RNaseP_bact_a links to Rfam database...	0.60	0.62	0.58	70	83316	60	9	41	10	43
ASE_00346	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	28	48115	64	7	55	2	69
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	46	3	38	5	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	46	75345	78	9	66	3	81
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	33	54184	72	7	61	4	72
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58547	55	12	41	2	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.33	0.35	0.32	30	42976	65	8	57	0	56
ASE_00369	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	72	55841	37	2	30	5	35
ASE_00370	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.66	53	41825	27	5	22	0	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.72	71	51905	30	5	22	3	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	60280	42	6	33	3	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	39	45969	55	7	41	7	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	54853	54	1	48	5	55
ASE_00382	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	43	41822	43	6	34	3	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54516	59	4	50	5	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	65	48429	27	4	18	5	27
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	52	6	45	1	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	38	55837	70	6	64	0	66
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	60	45666	32	1	26	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	41	42117	44	6	31	7	44
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	28	3	22	3	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	41	41539	45	1	35	9	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	30	41536	55	5	45	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	54511	50	7	43	0	51
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	55	57868	48	5	42	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	70	76898	60	13	47	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	50	42404	35	4	28	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	47	55851	51	3	44	4	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	47	42987	42	0	37	5	38
ASE_00408	-	0.51	0.49	0.53	35	32319	35	2	29	4	36
ASE_00411	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.26	24	49362	69	12	57	0	65
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.49	0.43	40	44457	54	14	40	0	41
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	52	7	43	2	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	86	77306	36	1	28	7	41
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.21	0.21	0.21	16	38703	67	8	54	5	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	75	54852	23	4	15	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	44	46881	51	5	41	5	50
ASE_00426	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	42	60971	62	5	57	0	66
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	65	76521	54	5	45	4	60
ASE_00429	-	0.36	0.38	0.35	25	28132	47	10	36	1	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	59	46881	36	5	26	5	38
ASE_00431	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	56	46280	36	3	21	12	39
ASE_00434	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	66	68165	46	9	25	12	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	55	79275	71	4	67	0	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.45	49	65957	60	6	54	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	83	64161	28	1	16	11	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	54	60274	55	1	49	5	62
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64151	91	6	79	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	59	70763	57	3	51	3	66
CRW_00002	-	0.59	0.56	0.62	147	408824	142	7	82	53	117
CRW_00004	-	0.49	0.50	0.48	66	154153	104	12	59	33	65
CRW_00005	-	0.55	0.55	0.54	73	137941	84	11	50	23	59
CRW_00007	-	0.35	0.38	0.33	51	144836	110	30	74	6	82
CRW_00009	-	0.59	0.60	0.58	83	137933	83	9	50	24	55
CRW_00010	-	0.58	0.60	0.57	75	102699	67	13	44	10	51
CRW_00011	-	0.65	0.66	0.63	91	118197	65	7	46	12	47
CRW_00013	Intron_gpI links to Rfam database...	0.16	0.17	0.15	19	103617	114	25	79	10	96
CRW_00014	-	0.38	0.37	0.39	46	103622	84	11	61	12	77
CRW_00016	Intron_gpI links to Rfam database...	0.64	0.62	0.66	74	77309	50	5	33	12	46
CRW_00017	-	0.40	0.44	0.36	40	92123	93	18	54	21	51
CRW_00019	-	0.69	0.69	0.70	94	127631	63	6	34	23	43
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.79	348	1085160	130	18	75	37	110
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.45	0.45	0.45	210	1170748	276	27	230	19	260
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	236	1107378	216	34	168	14	220
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1172293	234	28	192	14	240
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.44	0.43	208	1181469	284	32	244	8	268
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.34	152	1108852	312	37	264	11	305
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.55	0.55	255	1178420	227	21	184	22	210
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.65	296	1135820	182	22	140	20	167
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	238	1201566	240	29	192	19	238
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152467	282	34	230	18	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	236	1179961	240	37	182	21	235
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	242	1190746	234	25	183	26	226
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	128	1082212	325	37	279	9	317
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	196	1178413	284	31	240	13	277
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.47	220	1207767	270	26	222	22	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	260	1198467	221	30	169	22	218
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.34	157	1105872	312	45	254	13	296
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	275	1218668	230	24	174	32	209
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	205	1198449	287	30	242	15	273
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.46	206	1192291	257	41	202	14	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.39	168	1111857	279	39	222	18	287
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	220	1122307	239	36	188	15	242
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	222	1085169	227	31	179	17	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.43	193	1114817	278	26	235	17	264
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.24	113	1110332	354	55	295	4	340
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	270	35	216	19	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.30	134	1179968	334	40	274	20	330
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.51	226	1117813	234	28	193	13	227
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.30	138	1144878	340	40	285	15	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	120	1015605	317	42	258	17	312
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	115	1131320	336	35	290	11	341
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.47	214	1117807	257	31	208	18	244
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.46	209	1189197	272	34	213	25	267
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123818	305	44	250	11	323
CRW_00338	-	0.15	0.16	0.14	64	1052952	418	71	339	8	331
CRW_00381	-	0.33	0.34	0.32	189	2303139	503	71	332	100	368
CRW_00417	-	0.38	0.37	0.39	97	458154	163	22	130	11	165
CRW_00418	-	0.17	0.16	0.19	42	441104	195	25	159	11	218
CRW_00419	-	0.26	0.25	0.28	66	463932	175	16	152	7	199
CRW_00421	-	0.34	0.32	0.36	86	462964	166	22	131	13	180
CRW_00422	-	0.38	0.37	0.39	97	455287	169	22	129	18	166
CRW_00423	-	0.20	0.21	0.19	40	242348	179	26	142	11	149
CRW_00426	-	0.26	0.25	0.27	66	457200	190	24	156	10	199
CRW_00427	-	0.24	0.23	0.25	61	454339	196	32	149	15	200
CRW_00428	-	0.29	0.28	0.30	73	465855	179	27	140	12	187
CRW_00429	-	0.15	0.15	0.15	36	306701	203	48	151	4	197
CRW_00430	-	0.33	0.31	0.36	82	456260	154	27	121	6	184
CRW_00433	-	0.37	0.34	0.40	89	467805	139	16	118	5	174
CRW_00434	-	0.24	0.22	0.26	59	457218	179	11	158	10	204
CRW_00435	-	0.33	0.31	0.36	81	451499	155	16	129	10	184
CRW_00437	-	0.21	0.21	0.22	54	456243	200	25	168	7	206
CRW_00438	-	0.35	0.34	0.36	91	454325	175	25	140	10	177
CRW_00441	-	0.17	0.16	0.19	42	454358	185	31	150	4	220
CRW_00442	-	0.38	0.36	0.39	94	453389	153	25	120	8	167
CRW_00443	-	0.40	0.37	0.43	96	456268	147	23	103	21	164
CRW_00444	-	0.28	0.26	0.30	68	459131	169	33	129	7	195
CRW_00445	-	0.28	0.26	0.29	70	458165	178	24	144	10	195
CRW_00446	-	0.42	0.39	0.44	104	468762	140	16	114	10	161
CRW_00447	-	0.19	0.19	0.20	49	452433	207	33	161	13	211
CRW_00448	-	0.35	0.33	0.37	87	457211	166	26	122	18	174
CRW_00449	-	0.22	0.21	0.23	55	444853	191	24	164	3	205
CRW_00451	-	0.23	0.22	0.24	57	457204	199	24	161	14	207
CRW_00452	-	0.37	0.35	0.39	93	453390	155	24	121	10	169
CRW_00453	-	0.30	0.28	0.32	74	452448	164	23	131	10	187
CRW_00458	-	0.35	0.34	0.37	90	464887	164	30	123	11	174
CRW_00459	-	0.29	0.27	0.31	71	462012	175	27	131	17	192
CRW_00462	-	0.38	0.36	0.41	93	458178	151	18	114	19	168
CRW_00463	-	0.36	0.35	0.37	90	445799	160	21	130	9	164
CRW_00464	-	0.39	0.36	0.42	95	462015	141	15	116	10	169
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	194	25	142	27	185
CRW_00530	-	0.35	0.37	0.33	99	534795	217	51	150	16	169
CRW_00535	-	0.23	0.24	0.21	80	898096	325	72	222	31	248
CRW_00538	-	0.20	0.21	0.19	62	811841	294	70	202	22	238
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.22	95	1094029	351	37	299	15	350
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.33	141	1119330	303	41	244	18	311
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	267	1098475	190	19	142	29	179
CRW_00594	-	0.15	0.16	0.14	63	1028433	428	50	349	29	332
CRW_00596	-	0.23	0.24	0.22	92	1024178	344	55	271	18	294
CRW_00604	-	0.52	0.57	0.48	46	411682	216	14	36	166	35
CRW_00605	-	0.41	0.41	0.40	29	183848	142	13	31	98	41
CRW_00606	-	0.67	0.65	0.69	60	559066	262	4	23	235	32
CRW_00607	-	0.54	0.55	0.53	42	536051	276	8	29	239	35
CRW_00608	-	0.71	0.70	0.72	55	35702	25	6	15	4	24
CRW_00610	Intron_gpI links to Rfam database...	0.49	0.49	0.49	40	36233	43	7	35	1	41
CRW_00612	-	0.39	0.42	0.36	39	270372	196	5	64	127	54
CRW_00613	Intron_gpI links to Rfam database...	0.64	0.59	0.69	46	34913	29	1	20	8	32
CRW_00614	Intron_gpI links to Rfam database...	0.09	0.11	0.07	6	121690	145	21	54	70	51
CRW_00617	-	0.69	0.69	0.69	44	426362	237	1	19	217	20
CRW_00619	Intron_gpI links to Rfam database...	0.38	0.44	0.34	32	164930	138	28	35	75	41
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.13	13	150871	158	31	60	67	50
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153109	156	13	52	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.29	0.32	24	129720	119	11	40	68	59
CRW_00626	-	0.50	0.55	0.45	57	100899	86	26	43	17	47
CRW_00629	-	0.49	0.48	0.50	59	91260	61	12	47	2	63
CRW_00633	Intron_gpI links to Rfam database...	0.50	0.48	0.52	51	63447	50	10	38	2	55
CRW_00635	-	0.48	0.48	0.48	66	109140	82	10	62	10	71
CRW_00637	-	0.34	0.36	0.33	57	133730	120	21	95	4	101
CRW_00641	-	0.44	0.46	0.43	35	39821	55	10	37	8	41
CRW_00642	-	0.40	0.45	0.37	29	47199	58	14	36	8	36
CRW_00643	-	0.40	0.43	0.38	53	123116	98	27	60	11	69
CRW_00645	-	0.61	0.61	0.60	41	35443	39	5	22	12	26
CRW_00646	-	0.53	0.56	0.51	36	34909	41	5	30	6	28
CRW_00648	-	0.59	0.62	0.56	92	137912	74	18	53	3	56
CRW_00649	-	0.66	0.70	0.63	87	204341	121	14	38	69	37
CRW_00650	-	0.48	0.49	0.48	69	112906	80	9	66	5	73
CRW_00652	-	0.66	0.68	0.64	88	132217	71	8	42	21	42
CRW_00654	-	0.72	0.71	0.73	88	78090	37	4	28	5	36
CRW_00655	-	0.62	0.61	0.62	76	89131	50	9	37	4	48
CRW_00659	-	0.46	0.49	0.43	30	32315	49	10	30	9	31
CRW_00661	-	0.19	0.22	0.17	11	24245	56	15	39	2	40
CRW_00662	-	0.40	0.42	0.39	27	28611	49	7	35	7	38
CRW_00663	-	0.00	0.00	0.00	0	26031	76	12	63	1	61
CRW_00664	-	0.14	0.15	0.14	12	53540	87	15	61	11	66
CRW_00665	-	0.17	0.19	0.16	9	23597	50	10	37	3	39
CRW_00666	-	0.43	0.44	0.43	55	96014	84	11	61	12	71
CRW_00668	-	0.52	0.54	0.50	81	163717	97	17	63	17	69
CRW_00669	-	0.57	0.55	0.58	66	97347	65	9	39	17	53
CRW_00670	Intron_gpI links to Rfam database...	0.75	0.74	0.77	89	70009	30	5	22	3	31
CRW_00671	Intron_gpI links to Rfam database...	0.77	0.76	0.78	89	62721	30	6	19	5	28
CRW_00672	Intron_gpI links to Rfam database...	0.53	0.55	0.52	61	72273	60	21	35	4	50
CRW_00674	Intron_gpI links to Rfam database...	0.52	0.52	0.52	65	83310	63	12	49	2	59
CRW_00676	Intron_gpI links to Rfam database...	0.56	0.60	0.52	69	93396	67	13	50	4	46
CRW_00677	-	0.61	0.63	0.58	66	71897	54	13	34	7	39
CRW_00678	-	0.42	0.48	0.37	58	666280	305	27	70	208	63
CRW_00679	-	0.30	0.31	0.29	33	76521	88	14	68	6	74
CRW_00681	-	0.51	0.55	0.47	62	112919	84	22	47	15	50
CRW_00684	-	0.36	0.39	0.33	53	612010	296	36	72	188	82
CRW_00685	-	0.57	0.62	0.53	66	156955	102	19	40	43	40
CRW_00687	-	0.29	0.30	0.29	20	28610	51	12	38	1	46
CRW_00689	-	0.69	0.70	0.68	54	33590	28	11	15	2	23
CRW_00690	-	0.64	0.64	0.65	44	33343	28	11	13	4	25
CRW_00691	-	0.57	0.60	0.55	40	27188	35	6	27	2	27
CRW_00692	Intron_gpI links to Rfam database...	0.43	0.46	0.41	41	68536	66	18	40	8	49
CRW_00693	-	0.61	0.60	0.63	73	89137	59	2	41	16	49
CRW_00694	-	0.63	0.63	0.63	77	85782	52	6	40	6	45
CRW_00699	-	0.63	0.63	0.63	79	91680	48	6	41	1	47
CRW_00700	-	0.63	0.63	0.64	93	180755	88	9	44	35	54
CRW_00704	-	0.81	0.80	0.82	75	386669	195	4	12	179	19
CRW_00706	-	0.46	0.51	0.42	30	695538	341	7	35	299	29
CRW_00710	-	0.70	0.70	0.69	80	1040287	377	8	28	341	34
CRW_00712	-	0.47	0.54	0.41	58	952749	371	28	55	288	50
CRW_00713	-	0.65	0.65	0.65	66	731343	308	11	25	272	35
CRW_00714	-	0.20	0.22	0.18	24	186222	162	28	81	53	83
CRW_00715	-	0.76	0.73	0.78	76	69281	24	3	18	3	28
CRW_00716	-	0.84	0.85	0.83	76	193661	103	3	13	87	13
CRW_00717	-	0.66	0.66	0.66	97	153589	66	10	39	17	51
CRW_00718	-	0.81	0.80	0.83	153	189851	52	6	26	20	38
CRW_00719	-	0.55	0.56	0.55	51	230088	147	9	33	105	40
CRW_00721	-	0.51	0.59	0.45	40	58564	64	19	30	15	28
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.21	90	1215581	387	50	299	38	356
CRW_00764	-	0.06	0.07	0.06	13	252912	196	31	160	5	183
CRW_00766	-	0.22	0.22	0.23	52	440169	187	23	147	17	188
CRW_00768	-	0.60	0.58	0.62	150	471663	116	14	79	23	109
CRW_00769	-	0.40	0.37	0.42	94	451502	146	20	109	17	158
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.24	0.24	0.25	97	945607	320	41	255	24	307
CRW_00774	-	0.35	0.33	0.38	87	488335	169	17	127	25	176
CRW_00775	-	0.25	0.26	0.23	55	314586	190	42	138	10	157
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	84	1201649	346	41	251	54	300
CRW_00779	-	0.25	0.25	0.25	104	1031342	333	41	279	13	318
CRW_00780	-	0.32	0.31	0.34	79	475565	169	23	133	13	176
CRW_00783	-	0.31	0.31	0.31	80	453374	183	18	156	9	179
CRW_00784	-	0.34	0.33	0.36	86	456250	171	32	122	17	176
CRW_00785	-	0.35	0.33	0.36	84	452443	161	27	122	12	169
CRW_00787	-	0.26	0.26	0.26	81	646638	256	41	193	22	225
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	156	1137342	304	48	240	16	291
CRW_00793	-	0.25	0.26	0.24	97	1048678	351	44	257	50	280
CRW_00794	-	0.24	0.24	0.24	58	434539	200	18	163	19	188
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.24	0.25	0.23	98	1152503	357	51	269	37	296
CRW_00796	-	0.25	0.24	0.26	57	384786	182	29	131	22	178
CRW_00797	-	0.22	0.23	0.22	79	692890	299	41	243	15	263
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	288	31	195	62	227
CRW_00801	-	0.45	0.45	0.45	111	438269	150	33	103	14	138
CRW_00802	-	0.31	0.30	0.31	76	460076	184	36	132	16	177
CRW_00807	-	0.39	0.39	0.39	157	1391544	337	46	199	92	241
CRW_00808	-	0.31	0.33	0.29	117	1301289	391	68	217	106	239
CRW_00815	-	0.71	0.71	0.71	112	159737	52	12	34	6	46
CRW_00816	-	0.36	0.38	0.35	49	143775	111	19	73	19	80
CRW_00820	-	0.57	0.59	0.55	86	136347	79	13	57	9	59
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117798	260	25	212	23	245
CRW_01134	-	0.28	0.28	0.28	119	964927	318	32	277	9	308
CRW_01168	-	0.38	0.38	0.38	156	900738	277	34	225	18	255
CRW_01186	-	0.27	0.27	0.27	104	836186	293	35	246	12	282
CRW_01188	-	0.19	0.19	0.19	76	837466	330	48	275	7	317
CRW_01189	-	0.22	0.22	0.21	87	862232	338	49	273	16	305
CRW_01214	-	0.34	0.34	0.35	136	931909	261	42	208	11	269
CRW_01222	-	0.25	0.25	0.25	98	912881	302	58	239	5	299
CRW_01250	-	0.24	0.24	0.24	89	781505	291	39	242	10	289
CRW_01260	-	0.17	0.17	0.17	66	912885	337	46	279	12	327
CRW_01266	-	0.27	0.28	0.27	105	818167	301	42	246	13	276
CRW_01275	-	0.39	0.39	0.39	169	1082226	281	38	223	20	263
CRW_01283	-	0.39	0.39	0.40	161	963559	264	37	209	18	248
CRW_01314	-	0.25	0.25	0.26	101	937377	297	39	248	10	306
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.34	0.33	0.34	145	977474	293	46	236	11	289
CRW_01344	-	0.33	0.33	0.34	120	791554	252	45	192	15	246
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00072	-	0.37	0.39	0.36	81	148017	142	17	125	0	129
PDB_00078	-	0.49	0.47	0.51	54	49665	51	6	45	0	61
PDB_00079	-	0.70	0.65	0.74	93	121646	65	8	24	33	49
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00278	-	0.19	0.19	0.19	14	24904	58	7	51	0	58
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00403	-	0.52	0.53	0.51	81	124591	86	16	62	8	72
PDB_00423	-	0.24	0.23	0.26	17	26731	48	2	46	0	57
PDB_00447	-	0.97	1.00	0.94	44	7093	3	3	0	0	0
PDB_00571	tRNA links to Rfam database...	0.17	0.16	0.19	4	3300	17	6	11	0	21
PDB_00701	-	0.47	0.46	0.49	50	45349	53	5	47	1	59
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	239	1073392	239	21	193	25	256
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2675	27	1	25	1	23
PDB_00747	-	0.72	0.65	0.80	52	24466	13	0	13	0	28
PDB_00805	-	0.69	0.67	0.71	201	467744	108	13	70	25	101
PDB_00827	Intron_gpI links to Rfam database...	0.50	0.46	0.55	37	26961	31	1	29	1	44
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00874	-	0.10	0.10	0.14	2	932	12	2	10	0	18
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00917	-	0.50	0.48	0.52	46	35157	48	4	38	6	49
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	48	44164	44	3	38	3	55
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01040	-	0.30	0.30	0.33	6	1110	12	0	12	0	14
PDB_01070	-	0.14	0.13	0.15	7	12673	41	2	38	1	47
PDB_01092	glmS links to Rfam database...	0.71	0.67	0.74	35	10106	13	2	10	1	17
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	269	1433453	278	27	222	29	271
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.48	0.45	0.51	239	1204657	247	27	205	15	288
PDB_01129	-	0.26	0.28	0.25	20	35430	66	16	45	5	51
PDB_01157	-	0.28	0.28	0.28	27	49991	68	14	54	0	71
PDB_01166	-	0.45	0.43	0.47	92	181909	109	22	83	4	120
PDB_01260	-	0.41	0.36	0.47	9	1811	10	0	10	0	16
PDB_01261	-	0.50	0.45	0.55	152	467752	128	4	120	4	184
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	225	1117799	263	23	213	27	266
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.90	0.87	0.93	13	889	1	1	0	0	2
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
RFA_00597	Telomerase-vert links to Rfam database...	0.52	0.53	0.51	58	97789	83	8	48	27	51
RFA_00599	Telomerase-vert links to Rfam database...	0.63	0.68	0.60	75	101349	70	18	33	19	36
RFA_00601	Telomerase-vert links to Rfam database...	0.48	0.50	0.46	57	99111	86	21	46	19	57
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.72	0.67	83	101351	61	10	31	20	33
RFA_00632	HDV_ribozyme links to Rfam database...	0.88	0.89	0.86	25	4066	6	2	2	2	3
RFA_00636	HDV_ribozyme links to Rfam database...	0.95	0.96	0.93	27	3976	4	2	0	2	1
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	3	0	0	3	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	2	0	0	2	0
RFA_00769	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	3	1	0	2	0
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	3	0	0	3	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	4	1	0	3	0
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
TMR_00038	tmRNA links to Rfam database...	0.24	0.25	0.24	27	71141	89	12	73	4	83
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.54	53	62736	49	11	35	3	43
TMR_00047	tmRNA links to Rfam database...	0.26	0.30	0.23	17	48441	74	16	42	16	40
TMR_00048	tmRNA links to Rfam database...	0.32	0.34	0.30	32	64875	78	9	64	5	63
TMR_00049	tmRNA links to Rfam database...	0.52	0.53	0.51	46	63099	57	9	36	12	41
TMR_00051	tmRNA links to Rfam database...	0.65	0.61	0.70	57	65621	44	2	23	19	37
TMR_00055	tmRNA links to Rfam database...	0.14	0.15	0.14	17	78881	105	22	83	0	97
TMR_00064	tmRNA links to Rfam database...	0.40	0.40	0.40	41	76926	69	19	42	8	62
TMR_00073	tmRNA links to Rfam database...	0.46	0.45	0.47	53	65591	60	6	53	1	64
TMR_00076	tmRNA links to Rfam database...	0.33	0.34	0.32	34	70770	78	15	57	6	66
TMR_00106	tmRNA links to Rfam database...	0.47	0.49	0.45	59	89968	76	24	49	3	61
TMR_00144	tmRNA links to Rfam database...	0.25	0.26	0.23	27	74189	91	15	74	2	76
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.71	30	43029	49	2	10	37	12
TMR_00179	tmRNA links to Rfam database...	0.53	0.55	0.51	54	67055	63	11	41	11	44
TMR_00199	tmRNA links to Rfam database...	0.55	0.58	0.52	53	62733	56	19	30	7	39
TMR_00223	tmRNA links to Rfam database...	0.09	0.09	0.09	9	64163	93	16	73	4	86
TMR_00238	tmRNA links to Rfam database...	0.15	0.17	0.14	17	84548	109	17	84	8	84
TMR_00239	tmRNA links to Rfam database...	0.46	0.48	0.45	46	61673	59	11	46	2	50
TMR_00246	-	0.69	0.68	0.70	23	78177	107	2	8	97	11
TMR_00274	tmRNA links to Rfam database...	0.30	0.30	0.29	32	66684	85	13	66	6	73
TMR_00279	tmRNA links to Rfam database...	0.52	0.52	0.51	49	68910	57	10	37	10	45
TMR_00283	tmRNA links to Rfam database...	0.54	0.54	0.54	52	65244	53	5	40	8	44
TMR_00310	tmRNA links to Rfam database...	0.65	0.65	0.65	64	63805	39	9	25	5	34
TMR_00317	tmRNA links to Rfam database...	0.54	0.56	0.53	57	68157	54	14	37	3	45
TMR_00352	tmRNA links to Rfam database...	0.51	0.55	0.47	41	95179	84	17	29	38	34
TMR_00409	tmRNA links to Rfam database...	0.67	0.76	0.59	35	68576	69	10	14	45	11
TMR_00411	tmRNA links to Rfam database...	0.55	0.56	0.54	49	60984	47	10	32	5	38
TMR_00415	tmRNA links to Rfam database...	0.36	0.36	0.36	36	67062	66	13	50	3	65
TMR_00419	tmRNA links to Rfam database...	0.41	0.41	0.42	45	81702	82	11	52	19	66
TMR_00422	tmRNA links to Rfam database...	0.52	0.54	0.50	50	67796	59	12	38	9	42
TMR_00458	tmRNA links to Rfam database...	0.20	0.20	0.20	19	63449	85	19	59	7	74
TMR_00478	tmRNA links to Rfam database...	0.43	0.45	0.42	45	71902	66	17	46	3	54
TMR_00553	tmRNA links to Rfam database...	0.31	0.31	0.32	25	48127	59	8	45	6	56
TMR_00560	tmRNA links to Rfam database...	0.41	0.42	0.41	41	60975	68	6	53	9	57
TMR_00568	tmRNA links to Rfam database...	0.59	0.59	0.60	58	60630	47	3	35	9	41
TMR_00579	tmRNA links to Rfam database...	0.27	0.31	0.24	28	80486	96	21	66	9	62
TMR_00581	tmRNA links to Rfam database...	0.34	0.36	0.32	35	62373	77	12	61	4	63
TMR_00587	tmRNA links to Rfam database...	0.78	0.76	0.80	76	61330	24	4	15	5	24
TMR_00588	tmRNA links to Rfam database...	0.21	0.22	0.21	22	77314	94	20	65	9	79
TMR_00594	tmRNA links to Rfam database...	0.22	0.22	0.22	23	79295	88	14	69	5	81
TMR_00596	tmRNA links to Rfam database...	0.27	0.29	0.25	28	78099	91	19	64	8	67
TMR_00600	tmRNA links to Rfam database...	0.18	0.18	0.18	21	79686	95	18	75	2	94
TMR_00603	tmRNA links to Rfam database...	0.64	0.65	0.64	28	60334	76	7	9	60	15
TMR_00606	tmRNA links to Rfam database...	0.44	0.46	0.42	49	68890	72	8	59	5	58
TMR_00625	tmRNA links to Rfam database...	0.21	0.22	0.20	23	78889	95	28	63	4	83
TMR_00706	tmRNA links to Rfam database...	0.53	0.52	0.53	54	66328	52	6	42	4	49
TMR_00712	tmRNA links to Rfam database...	0.40	0.41	0.39	45	78490	73	19	52	2	64

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]