CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CMfinder(20)		RNAwolf
MCC	0.482	>	0.368
Average MCC ± 95% Confidence Intervals	0.484 ± 0.018	>	0.374 ± 0.019
Sensitivity	0.310	<	0.378
Positive Predictive Value	0.749	>	0.361
Total TP	6683	<	8151
Total TN	12439819	>	12426147
Total FP	2540	<	16494
Total FP CONTRA	195	<	2153
Total FP INCONS	2042	<	12288
Total FP COMP	303	<	2053
Total FN	14865	>	13397
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CMfinder(20) and RNAwolf. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CMfinder(20) and RNAwolf).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CMfinder(20) and RNAwolf).
Comparison of average Matthews Correlation Coefficients (MCCs) for CMfinder(20) and RNAwolf. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CMfinder(20) and RNAwolf).

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Performance of CMfinder(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP	6683
Total TN	12439819
Total FP	2540
Total FP CONTRA	195
Total FP INCONS	2042
Total FP COMP	303
Total FN	14865

Total Scores
MCC	0.482
Average MCC ± 95% Confidence Intervals	0.484 ± 0.018
Sensitivity	0.310
Positive Predictive Value	0.749
Nr of predictions	209

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2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.29	0.88	28	47863	4	0	4	0	69
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.26	0.67	30	57925	15	0	15	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	37	47536	13	1	12	0	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	53	59623	11	1	8	2	57
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.96	22	73897	1	0	1	0	101
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	54	80529	20	1	17	2	80
ASE_00020	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.68	30	73876	16	1	13	2	96
ASE_00021	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.80	28	104161	7	1	6	0	132
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.28	0.71	35	82979	14	1	13	0	89
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.41	0.84	52	84604	11	3	7	1	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.46	0.29	0.74	34	70454	12	1	11	0	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	46	59276	18	0	18	0	64
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.73	37	53577	14	1	13	0	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.80	32	78963	9	1	7	1	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	41	57577	12	0	12	0	67
ASE_00042	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.90	26	90071	3	0	3	0	119
ASE_00044	RNaseP_bact_a links to Rfam database...	0.45	0.29	0.71	30	54573	13	0	12	1	75
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.75	27	45415	10	1	8	1	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	37	37632	6	0	6	0	48
ASE_00074	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	52	67839	6	0	5	1	67
ASE_00075	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.80	28	108776	7	1	6	0	134
ASE_00077	RNaseP_bact_a links to Rfam database...	0.59	0.36	0.97	31	45118	1	0	1	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	51	43010	11	1	9	1	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.24	0.58	30	71579	22	0	22	0	93
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.86	30	49735	6	0	5	1	67
ASE_00082	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.82	45	70445	17	0	10	7	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.91	30	62448	4	0	3	1	80
ASE_00084	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.69	34	53579	15	0	15	0	65
ASE_00087	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	30	88372	8	0	8	0	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.33	0.66	33	55561	18	0	17	1	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.81	42	63494	11	0	10	1	71
ASE_00099	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	48	64557	17	0	15	2	72
ASE_00104	RNaseP_bact_a links to Rfam database...	0.47	0.30	0.73	36	64212	14	0	13	1	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.78	25	64229	7	1	6	0	86
ASE_00107	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	57	73086	10	0	10	0	70
ASE_00115	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	54583	4	0	3	1	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	49	60670	9	1	6	2	53
ASE_00119	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	31	62789	17	3	12	2	77
ASE_00123	RNaseP_bact_a links to Rfam database...	0.45	0.28	0.71	24	38469	14	0	10	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	35	39294	12	1	10	1	53
ASE_00126	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	46	40411	14	0	13	1	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	53269	4	0	3	1	71
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.27	0.97	30	62804	1	0	1	0	81
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.83	29	39305	7	0	6	1	56
ASE_00134	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	0	10	1	49
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	37	63133	20	1	19	0	72
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.50	0.81	46	48148	13	0	11	2	46
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	49	48461	7	2	4	1	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	51	40411	9	1	7	1	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.69	22	70844	11	0	10	1	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	27	67133	3	0	1	2	95
ASE_00146	RNaseP_bact_a links to Rfam database...	0.52	0.38	0.70	47	70809	20	1	19	0	77
ASE_00153	RNaseP_nuc links to Rfam database...	0.09	0.05	0.16	4	57605	39	5	16	18	69
ASE_00163	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	50	53241	10	1	9	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.97	31	52943	1	0	1	0	70
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.83	30	48792	8	0	6	2	63
ASE_00171	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	45	48463	9	1	7	1	49
ASE_00172	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.74	40	58942	15	1	13	1	66
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.81	21	61049	5	2	3	0	88
ASE_00175	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.65	34	59979	18	0	18	0	73
ASE_00179	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.67	38	44196	19	3	16	0	46
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	57	51292	11	0	11	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	32	57591	8	0	7	1	74
ASE_00182	RNaseP_bact_a links to Rfam database...	0.40	0.26	0.64	35	84200	20	1	19	0	101
ASE_00183	RNaseP_bact_a links to Rfam database...	0.42	0.26	0.67	29	61382	14	0	14	0	84
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.86	48	54559	8	1	7	0	54
ASE_00185	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.70	23	73503	10	0	10	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.71	36	78952	15	0	15	0	96
ASE_00190	RNaseP_bact_b links to Rfam database...	0.32	0.18	0.57	16	45423	13	1	11	1	74
ASE_00197	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.78	38	89204	11	0	11	0	107
ASE_00198	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.84	47	52594	9	1	8	0	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	46636	6	2	4	0	73
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.27	0.69	40	93903	18	1	17	0	108
ASE_00214	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	48	56221	13	0	11	2	55
ASE_00215	RNaseP_bact_a links to Rfam database...	0.42	0.27	0.66	27	48475	15	0	14	1	72
ASE_00216	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.86	49	39283	8	5	3	0	33
ASE_00217	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	34	40426	12	0	10	2	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.80	45	64564	11	1	10	0	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	21	46941	10	2	7	1	65
ASE_00229	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.75	38	42435	14	0	13	1	49
ASE_00231	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	43	47843	9	2	7	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	47	38443	13	4	9	0	37
ASE_00234	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.74	35	75419	12	1	11	0	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	25	64235	1	0	1	0	89
ASE_00241	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	59	43889	8	0	8	0	28
ASE_00242	RNaseP_bact_a links to Rfam database...	0.58	0.41	0.81	46	61018	13	1	10	2	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.80	44	62426	11	1	10	0	70
ASE_00254	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	45	36797	14	3	11	0	37
ASE_00255	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.82	28	74657	6	1	5	0	102
ASE_00257	RNaseP_bact_a links to Rfam database...	0.51	0.36	0.73	35	50992	14	0	13	1	62
ASE_00263	RNaseP_bact_a links to Rfam database...	0.50	0.33	0.78	39	70450	12	0	11	1	81
ASE_00267	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.82	41	45100	10	0	9	1	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	35	72346	9	0	9	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.56	0.42	0.75	43	55554	14	1	13	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.89	25	48177	3	0	3	0	66
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.93	27	53272	2	0	2	0	74
ASE_00280	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.67	29	51960	15	0	14	1	69
ASE_00281	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.81	26	44519	6	0	6	0	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	38	77759	18	1	17	0	89
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	28	61742	8	0	6	2	79
ASE_00284	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	26	58274	11	0	11	0	82
ASE_00285	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.82	27	68973	6	0	6	0	95
ASE_00286	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	47	46610	9	0	8	1	45
ASE_00287	RNaseP_bact_a links to Rfam database...	0.44	0.31	0.63	32	54895	20	1	18	1	71
ASE_00292	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.72	48	81743	19	0	19	0	90
ASE_00294	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.74	32	114438	12	0	11	1	139
ASE_00296	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.67	26	91767	13	0	13	0	119
ASE_00297	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.65	24	52938	14	0	13	1	74
ASE_00298	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.75	43	67471	14	1	13	0	70
ASE_00318	RNaseP_bact_b links to Rfam database...	0.49	0.31	0.80	36	80155	10	3	6	1	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.48	0.34	0.69	38	72716	20	4	13	3	74
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.20	0.87	27	81779	4	0	4	0	111
ASE_00335	RNaseP_bact_b links to Rfam database...	0.46	0.32	0.67	37	75411	19	2	16	1	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	31	46006	19	5	14	0	54
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	47	62423	13	0	11	2	68
ASE_00353	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	42	57908	21	1	19	1	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	27	75430	10	1	8	1	100
ASE_00362	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.66	37	48149	19	0	19	0	54
ASE_00363	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.78	28	51324	9	4	4	1	66
ASE_00364	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	54251	8	0	8	0	79
ASE_00366	RNaseP_bact_a links to Rfam database...	0.43	0.33	0.56	32	58596	25	3	22	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	26	43040	5	0	5	0	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.79	41	55893	11	0	11	0	66
ASE_00370	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	48	41847	11	1	9	1	36
ASE_00372	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.84	43	51952	8	0	8	0	57
ASE_00374	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.85	28	44817	6	0	5	1	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.25	0.70	26	56916	11	0	11	0	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	27	57594	10	0	9	1	80
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	39	46009	9	0	8	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.81	43	41852	11	1	9	1	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	11	1	10	0	65
ASE_00384	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.87	26	48486	5	0	4	1	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	30	50371	3	0	2	1	66
ASE_00387	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.75	24	55913	9	0	8	1	80
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	49	45695	10	1	8	1	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	28	42165	3	0	2	1	57
ASE_00393	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.74	42	47838	15	1	14	0	51
ASE_00394	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	29	46940	3	0	2	1	64
ASE_00395	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.78	40	41565	11	0	11	0	44
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.34	0.93	28	41586	3	0	2	1	55
ASE_00397	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	12	0	11	1	65
ASE_00398	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.86	24	55917	5	0	4	1	80
ASE_00400	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	46	57911	13	1	12	0	60
ASE_00401	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.90	26	76999	4	0	3	1	100
ASE_00402	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.79	31	42447	8	0	8	0	54
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.88	45	55894	6	1	5	0	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	48	43013	10	1	9	0	37
ASE_00406	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	39	48782	9	0	7	2	55
ASE_00411	RNaseP_bact_a links to Rfam database...	0.44	0.33	0.59	29	49406	20	1	19	0	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.79	38	58263	11	0	10	1	67
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.70	30	44508	14	3	10	1	51
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.75	21	54918	8	0	7	1	82
ASE_00416	RNaseP_bact_a links to Rfam database...	0.42	0.21	0.82	27	77388	7	0	6	1	100
ASE_00419	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.75	42	54890	14	2	12	0	61
ASE_00422	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.79	38	46923	11	0	10	1	56
ASE_00423	RNaseP_bact_a links to Rfam database...	0.39	0.24	0.63	26	56912	15	0	15	0	83
ASE_00428	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	50	76573	13	1	12	0	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	24	46943	4	0	4	0	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.39	0.87	53	79340	8	0	8	0	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.80	40	64211	11	1	9	1	72
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	37	64214	11	0	10	1	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	70823	10	1	8	1	81
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	0	1	0	5
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_01020	Purine links to Rfam database...	0.78	0.61	1.00	14	2264	0	0	0	0	9
PDB_01073	SAM links to Rfam database...	0.59	0.35	1.00	12	4359	1	0	0	1	22
RFA_00599	Telomerase-vert links to Rfam database...	0.06	0.04	0.10	4	101435	37	2	34	1	107
RFA_00601	Telomerase-vert links to Rfam database...	0.20	0.13	0.32	15	99188	37	2	30	5	99
RFA_00602	Telomerase-vert links to Rfam database...	0.15	0.09	0.26	10	101437	34	0	28	6	106
TMR_00017	tmRNA links to Rfam database...	0.44	0.23	0.85	23	67134	8	0	4	4	79
TMR_00018	tmRNA links to Rfam database...	0.29	0.13	0.67	12	64602	10	0	6	4	80
TMR_00038	tmRNA links to Rfam database...	0.49	0.25	0.93	28	71223	4	1	1	2	82
TMR_00042	tmRNA links to Rfam database...	0.22	0.12	0.40	12	62805	21	0	18	3	86
TMR_00046	tmRNA links to Rfam database...	0.31	0.22	0.44	21	62787	30	4	23	3	75
TMR_00048	tmRNA links to Rfam database...	0.28	0.20	0.40	19	64933	33	5	23	5	76
TMR_00080	tmRNA links to Rfam database...	0.47	0.29	0.76	28	70463	9	0	9	0	68
TMR_00082	tmRNA links to Rfam database...	0.44	0.30	0.63	29	67850	21	1	16	4	67
TMR_00123	tmRNA links to Rfam database...	0.41	0.22	0.76	22	66401	12	0	7	5	79
TMR_00137	tmRNA links to Rfam database...	0.33	0.20	0.55	18	61042	21	2	13	6	71
TMR_00142	tmRNA links to Rfam database...	0.12	0.07	0.21	7	70843	33	8	18	7	95
TMR_00207	tmRNA links to Rfam database...	0.32	0.18	0.54	19	72355	16	6	10	0	84
TMR_00257	tmRNA links to Rfam database...	0.46	0.29	0.76	28	67124	14	0	9	5	70
TMR_00271	tmRNA links to Rfam database...	0.28	0.14	0.57	13	64238	15	1	9	5	78
TMR_00332	tmRNA links to Rfam database...	0.40	0.22	0.71	22	67130	14	0	9	5	77
TMR_00366	tmRNA links to Rfam database...	0.32	0.17	0.59	17	67867	23	3	9	11	83
TMR_00378	tmRNA links to Rfam database...	0.32	0.18	0.59	17	67867	23	3	9	11	80
TMR_00399	tmRNA links to Rfam database...	0.18	0.09	0.36	8	64958	14	7	7	0	86
TMR_00404	tmRNA links to Rfam database...	0.21	0.11	0.42	10	67504	25	4	10	11	82
TMR_00427	tmRNA links to Rfam database...	0.55	0.32	0.94	31	67495	7	0	2	5	66
TMR_00443	tmRNA links to Rfam database...	0.41	0.27	0.64	28	67117	20	1	15	4	76
TMR_00451	tmRNA links to Rfam database...	0.17	0.11	0.25	10	63506	34	6	24	4	79
TMR_00458	tmRNA links to Rfam database...	0.18	0.09	0.38	8	63525	16	1	12	3	85
TMR_00469	tmRNA links to Rfam database...	0.50	0.31	0.79	31	64581	12	1	7	4	69
TMR_00472	tmRNA links to Rfam database...	0.50	0.30	0.83	29	64585	10	1	5	4	68
TMR_00519	tmRNA links to Rfam database...	0.28	0.18	0.44	17	63151	27	2	20	5	78
TMR_00520	tmRNA links to Rfam database...	0.34	0.19	0.59	19	63158	13	4	9	0	80
TMR_00522	tmRNA links to Rfam database...	0.38	0.20	0.73	19	63164	7	1	6	0	78
TMR_00528	tmRNA links to Rfam database...	0.40	0.23	0.71	22	63159	13	2	7	4	75
TMR_00540	tmRNA links to Rfam database...	0.30	0.18	0.50	19	73498	24	2	17	5	85
TMR_00568	tmRNA links to Rfam database...	0.33	0.17	0.65	17	60700	14	0	9	5	82
TMR_00571	tmRNA links to Rfam database...	0.37	0.19	0.70	19	60699	13	0	8	5	80
TMR_00580	tmRNA links to Rfam database...	0.35	0.19	0.66	19	60697	15	2	8	5	81
TMR_00584	tmRNA links to Rfam database...	0.31	0.15	0.63	15	61051	15	1	8	6	82
TMR_00586	tmRNA links to Rfam database...	0.36	0.20	0.68	19	61047	14	1	8	5	78
TMR_00616	tmRNA links to Rfam database...	0.46	0.28	0.76	28	67124	12	3	6	3	71
TMR_00699	tmRNA links to Rfam database...	0.32	0.17	0.61	17	67133	12	3	8	1	85
TMR_00702	tmRNA links to Rfam database...	0.42	0.24	0.73	24	67128	10	3	6	1	76
TMR_00703	tmRNA links to Rfam database...	0.52	0.35	0.78	35	67483	15	1	9	5	64

^top

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

Total Base Pair Counts
Total TP	8151
Total TN	12426147
Total FP	16494
Total FP CONTRA	2153
Total FP INCONS	12288
Total FP COMP	2053
Total FN	13397

Total Scores
MCC	0.368
Average MCC ± 95% Confidence Intervals	0.374 ± 0.019
Sensitivity	0.378
Positive Predictive Value	0.361
Nr of predictions	209

^top

2. Individual counts for RNAwolf [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	47799	61	8	39	14	48
ASE_00005	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	54	57854	68	12	50	6	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.30	31	47484	83	10	61	12	62
ASE_00007	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	33	59577	81	11	64	6	77
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	67	73797	68	5	51	12	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	72	80465	72	4	60	8	62
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	78	73799	56	6	37	13	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	70	104045	94	7	74	13	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.45	0.44	56	82901	79	9	62	8	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.46	0.47	0.45	59	84536	90	9	62	19	67
ASE_00035	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	27	70375	102	22	76	4	91
ASE_00037	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.39	38	59242	67	8	52	7	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.41	41	53529	66	7	51	8	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.30	43	78860	110	16	84	10	90
ASE_00041	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.39	39	57530	71	7	54	10	69
ASE_00042	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	45	89957	109	9	89	11	100
ASE_00044	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	50	54511	71	5	49	17	55
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	17	45361	82	13	60	9	72
ASE_00068	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	32	37591	57	8	44	5	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	43	67779	81	9	65	7	76
ASE_00075	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	93	108656	77	7	55	15	69
ASE_00077	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	32	45059	70	15	44	11	54
ASE_00078	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	24	42983	71	8	56	7	59
ASE_00080	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.36	45	71507	88	5	74	9	78
ASE_00081	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	21	49668	87	9	72	6	76
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	53	70377	86	8	62	16	63
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	32	62368	94	11	70	13	78
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.61	0.57	60	53523	55	7	38	10	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	41	88276	102	8	85	9	103
ASE_00090	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.31	33	55504	91	4	70	17	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.50	59	63428	75	11	48	16	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	66	64503	67	3	48	16	54
ASE_00104	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	46	64148	80	2	65	13	73
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	63	64151	57	10	37	10	48
ASE_00107	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.50	67	73020	74	9	57	8	60
ASE_00115	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.28	29	54512	85	6	68	11	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	31	60607	93	9	79	5	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	57	62722	71	10	46	15	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	41	38412	58	9	41	8	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	39252	53	12	34	7	46
ASE_00126	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	36	40385	59	9	40	10	46
ASE_00128	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.43	46	53195	70	6	54	10	54
ASE_00129	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	39	62716	87	8	72	7	72
ASE_00131	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	39	39258	54	10	33	11	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	47	50305	59	8	43	8	48
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	50	63078	74	12	50	12	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	25	48112	84	4	64	16	67
ASE_00137	RNaseP_bact_a links to Rfam database...	0.47	0.49	0.45	48	48410	75	3	55	17	50
ASE_00138	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.54	45	40386	55	6	33	16	36
ASE_00140	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	62	70757	67	7	50	10	63
ASE_00142	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.27	34	67037	95	13	77	5	88
ASE_00146	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.42	53	70749	81	12	62	7	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	28	57534	96	15	53	28	45
ASE_00163	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	37	53208	82	0	56	26	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.18	0.17	18	52870	93	10	77	6	83
ASE_00170	RNaseP_bact_a links to Rfam database...	0.35	0.37	0.34	34	48728	76	9	57	10	59
ASE_00171	RNaseP_bact_a links to Rfam database...	0.57	0.60	0.55	56	48414	56	8	38	10	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	58880	80	9	64	7	63
ASE_00174	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	55	60957	77	11	52	14	54
ASE_00175	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	60	59919	62	10	42	10	47
ASE_00179	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	44162	79	13	55	11	61
ASE_00180	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	43	51259	71	7	51	13	57
ASE_00181	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	57514	78	9	64	5	63
ASE_00182	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	58	84123	86	5	69	12	78
ASE_00183	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	50	61316	71	8	51	12	63
ASE_00184	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.42	47	54504	69	11	53	5	55
ASE_00185	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	63	73407	73	10	56	7	65
ASE_00186	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	55	78877	87	9	62	16	77
ASE_00190	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.57	49	45365	50	1	36	13	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.31	46	89104	114	10	93	11	99
ASE_00198	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.28	28	52551	76	7	64	5	74
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.52	53	46564	58	10	38	10	43
ASE_00212	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	43	93810	117	10	98	9	105
ASE_00214	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	47	56171	76	2	60	14	56
ASE_00215	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.29	28	48418	83	6	64	13	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	21	39255	67	8	56	3	61
ASE_00217	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.35	30	40385	63	5	50	8	60
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	43	64496	87	11	70	6	74
ASE_00228	RNaseP_bact_a links to Rfam database...	0.36	0.40	0.32	34	46866	76	20	51	5	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.09	9	42384	101	6	87	8	78
ASE_00231	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.53	56	47790	61	8	41	12	40
ASE_00232	RNaseP_bact_a links to Rfam database...	0.37	0.39	0.36	33	38411	70	4	55	11	51
ASE_00234	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	70	75338	70	8	50	12	59
ASE_00238	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	65	64144	64	10	42	12	49
ASE_00241	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.59	56	43861	48	6	33	9	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	46	60970	62	14	45	3	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	35	62376	75	7	63	5	79
ASE_00254	RNaseP_bact_a links to Rfam database...	0.36	0.39	0.34	32	36761	69	10	53	6	50
ASE_00255	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	61	74555	83	9	66	8	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	55	50941	56	9	35	12	42
ASE_00263	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.15	19	70373	111	9	99	3	101
ASE_00267	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	31	45067	62	8	44	10	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	64	72268	71	4	54	13	64
ASE_00274	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	30	55512	78	13	56	9	73
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	27	48103	84	14	61	9	64
ASE_00279	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.29	29	53202	80	4	66	10	72
ASE_00280	RNaseP_bact_a links to Rfam database...	0.20	0.20	0.20	20	51905	85	5	73	7	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.33	0.34	0.32	30	44458	73	11	52	10	58
ASE_00282	RNaseP_bact_a links to Rfam database...	0.23	0.24	0.24	30	77688	105	10	87	8	97
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	51	61662	74	12	51	11	56
ASE_00284	RNaseP_bact_a links to Rfam database...	0.08	0.08	0.08	9	58197	111	9	96	6	99
ASE_00285	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	34	68878	102	9	85	8	88
ASE_00286	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	50	46583	42	6	26	10	42
ASE_00287	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.30	31	54842	81	6	67	8	72
ASE_00292	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	52	81676	93	8	74	11	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.38	63	114317	107	9	92	6	108
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	44	91669	101	7	86	8	101
ASE_00297	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	52873	73	4	57	12	57
ASE_00298	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	33	67418	86	8	69	9	80
ASE_00318	RNaseP_bact_b links to Rfam database...	0.41	0.42	0.40	49	80077	79	13	61	5	69
ASE_00328	RNaseP_bact_b links to Rfam database...	0.51	0.49	0.53	55	72667	61	5	44	12	57
ASE_00332	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.24	32	81674	118	5	99	14	106
ASE_00335	RNaseP_bact_b links to Rfam database...	0.58	0.57	0.58	66	75353	65	5	42	18	50
ASE_00340	RNaseP_bact_a links to Rfam database...	0.14	0.15	0.14	13	45963	87	8	72	7	72
ASE_00342	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	58	62365	70	9	49	12	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.19	22	57852	106	9	87	10	85
ASE_00361	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	47	75333	94	11	75	8	80
ASE_00362	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	40	48110	66	10	45	11	51
ASE_00363	RNaseP_bact_a links to Rfam database...	0.29	0.31	0.27	29	51254	81	12	65	4	65
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	41	54177	77	9	58	10	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.19	0.20	0.17	20	58538	98	14	81	3	78
ASE_00367	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	42978	79	8	62	9	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.33	38	55831	88	3	73	12	69
ASE_00370	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	25	41816	75	7	57	11	59
ASE_00372	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	22	51897	88	11	73	4	78
ASE_00374	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	44763	54	2	43	9	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.44	48	56843	71	4	58	9	57
ASE_00377	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	70	57521	52	8	31	13	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	23	45964	77	10	59	8	66
ASE_00382	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	31	41816	69	12	46	11	53
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54514	70	4	52	14	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	48418	84	10	62	12	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	38	50303	74	6	56	12	58
ASE_00387	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	49	55841	66	8	47	11	55
ASE_00388	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	27	45657	84	7	62	15	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.38	0.40	0.36	34	42100	71	9	52	10	51
ASE_00393	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	47798	77	6	65	6	67
ASE_00394	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	46881	73	6	57	10	66
ASE_00395	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	47	41526	54	12	31	11	37
ASE_00396	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.27	25	41522	78	11	58	9	58
ASE_00397	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	45	54509	75	7	54	14	60
ASE_00398	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.35	37	55839	79	6	63	10	67
ASE_00400	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.62	68	57860	54	9	33	12	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	51	76893	91	12	72	7	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.44	0.45	0.44	38	42400	59	7	41	11	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.24	25	55841	94	8	71	15	82
ASE_00404	RNaseP_bact_a links to Rfam database...	0.25	0.28	0.23	24	42967	83	16	64	3	61
ASE_00406	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	30	48740	71	5	53	13	64
ASE_00411	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	49362	70	10	47	13	53
ASE_00412	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.25	26	58206	86	11	68	7	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.62	0.59	50	44466	49	10	25	14	31
ASE_00415	RNaseP_bact_a links to Rfam database...	0.47	0.48	0.46	49	54839	67	5	53	9	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.32	0.32	0.32	41	77291	98	8	81	9	86
ASE_00419	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.49	54	54836	66	9	47	10	49
ASE_00422	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	23	46875	85	1	72	12	71
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.34	41	56833	84	9	70	5	68
ASE_00428	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.29	37	76507	103	11	81	11	88
ASE_00430	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	51	46873	56	1	46	9	46
ASE_00437	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	41	79268	98	3	89	6	94
ASE_00441	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	51	64147	73	3	60	10	61
ASE_00448	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	48	64161	65	8	44	13	64
ASE_00451	RNaseP_bact_a links to Rfam database...	0.48	0.49	0.47	61	70746	77	7	62	8	64
PDB_00571	tRNA links to Rfam database...	0.89	0.84	0.95	21	3299	2	1	0	1	4
PDB_00828	Purine links to Rfam database...	0.85	0.81	0.88	22	2460	3	1	2	0	5
PDB_00829	Purine links to Rfam database...	0.78	0.75	0.82	18	2256	4	1	3	0	6
PDB_01020	Purine links to Rfam database...	0.84	0.83	0.86	19	2256	5	1	2	2	4
PDB_01073	SAM links to Rfam database...	0.17	0.18	0.17	6	4336	29	3	26	0	28
RFA_00599	Telomerase-vert links to Rfam database...	0.31	0.34	0.28	38	101339	111	33	65	13	73
RFA_00601	Telomerase-vert links to Rfam database...	0.37	0.42	0.33	48	99088	112	28	71	13	66
RFA_00602	Telomerase-vert links to Rfam database...	0.32	0.35	0.30	41	101337	128	16	81	31	75
TMR_00017	tmRNA links to Rfam database...	0.27	0.26	0.27	27	67061	85	12	61	12	75
TMR_00018	tmRNA links to Rfam database...	0.34	0.37	0.32	34	64515	80	23	48	9	58
TMR_00038	tmRNA links to Rfam database...	0.48	0.51	0.46	56	71130	78	15	52	11	54
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62737	83	11	63	9	74
TMR_00046	tmRNA links to Rfam database...	0.38	0.42	0.35	40	62722	90	15	58	17	56
TMR_00048	tmRNA links to Rfam database...	0.51	0.55	0.47	52	64870	70	16	42	12	43
TMR_00080	tmRNA links to Rfam database...	0.19	0.22	0.17	21	70379	108	32	68	8	75
TMR_00082	tmRNA links to Rfam database...	0.30	0.33	0.28	32	67782	91	23	59	9	64
TMR_00123	tmRNA links to Rfam database...	0.21	0.23	0.21	23	66318	95	16	73	6	78
TMR_00137	tmRNA links to Rfam database...	0.30	0.34	0.27	30	60965	85	25	55	5	59
TMR_00142	tmRNA links to Rfam database...	0.30	0.33	0.28	34	70753	96	25	64	7	68
TMR_00207	tmRNA links to Rfam database...	0.26	0.27	0.25	28	72276	92	17	69	6	75
TMR_00257	tmRNA links to Rfam database...	0.26	0.29	0.24	28	67045	100	17	71	12	70
TMR_00271	tmRNA links to Rfam database...	0.19	0.21	0.18	19	64156	98	18	68	12	72
TMR_00332	tmRNA links to Rfam database...	0.27	0.29	0.25	29	67043	96	21	68	7	70
TMR_00366	tmRNA links to Rfam database...	0.25	0.27	0.23	27	67778	97	19	72	6	73
TMR_00378	tmRNA links to Rfam database...	0.17	0.20	0.15	19	67773	107	29	75	3	78
TMR_00399	tmRNA links to Rfam database...	0.30	0.32	0.29	30	64876	86	18	56	12	64
TMR_00404	tmRNA links to Rfam database...	0.20	0.22	0.18	20	67416	98	13	79	6	72
TMR_00427	tmRNA links to Rfam database...	0.15	0.15	0.14	15	67420	98	21	72	5	82
TMR_00443	tmRNA links to Rfam database...	0.23	0.25	0.22	26	67043	107	10	82	15	78
TMR_00451	tmRNA links to Rfam database...	0.15	0.17	0.13	15	63432	103	35	64	4	74
TMR_00458	tmRNA links to Rfam database...	0.32	0.33	0.30	31	63443	80	16	56	8	62
TMR_00469	tmRNA links to Rfam database...	0.17	0.19	0.16	19	64500	111	14	87	10	81
TMR_00472	tmRNA links to Rfam database...	0.26	0.27	0.25	26	64516	87	16	62	9	71
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63085	101	22	69	10	81
TMR_00520	tmRNA links to Rfam database...	0.17	0.18	0.16	18	63075	102	28	69	5	81
TMR_00522	tmRNA links to Rfam database...	0.27	0.30	0.24	29	63068	94	31	62	1	68
TMR_00528	tmRNA links to Rfam database...	0.23	0.25	0.22	24	63081	92	28	57	7	73
TMR_00540	tmRNA links to Rfam database...	0.26	0.28	0.24	29	73417	98	15	75	8	75
TMR_00568	tmRNA links to Rfam database...	0.39	0.39	0.39	39	60625	76	15	47	14	60
TMR_00571	tmRNA links to Rfam database...	0.50	0.51	0.50	50	60625	71	7	44	20	49
TMR_00580	tmRNA links to Rfam database...	0.43	0.45	0.41	45	60615	82	7	59	16	55
TMR_00584	tmRNA links to Rfam database...	0.27	0.28	0.26	27	60972	91	13	63	15	70
TMR_00586	tmRNA links to Rfam database...	0.47	0.49	0.44	48	60967	74	19	41	14	49
TMR_00616	tmRNA links to Rfam database...	0.36	0.39	0.34	39	67045	86	14	63	9	60
TMR_00699	tmRNA links to Rfam database...	0.23	0.25	0.22	25	67048	94	15	73	6	77
TMR_00702	tmRNA links to Rfam database...	0.13	0.14	0.12	14	67047	107	9	91	7	86
TMR_00703	tmRNA links to Rfam database...	0.21	0.23	0.20	23	67411	99	22	72	5	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CMfinder(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

2. Individual counts for CMfinder(20) [ download as .csv ]

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

2. Individual counts for RNAwolf [ download as .csv ]