CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	CentroidAlifold(20)		Mastr(20)
MCC	0.646	>	0.035
Average MCC ± 95% Confidence Intervals	0.698 ± 0.014	>	0.012 ± 0.012
Sensitivity	0.493	>	0.002
Positive Predictive Value	0.847	>	0.693
Total TP	17205	>	61
Total TN	57037157	<	57057377
Total FP	4148	>	28
Total FP CONTRA	472	>	4
Total FP INCONS	2631	>	23
Total FP COMP	1045	>	1
Total FN	17703	<	34847
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of CentroidAlifold(20) and Mastr(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidAlifold(20) and Mastr(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidAlifold(20) and Mastr(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidAlifold(20) and Mastr(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidAlifold(20) and Mastr(20)).

^top

Performance of CentroidAlifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(20)

Total Base Pair Counts
Total TP	17205
Total TN	57037157
Total FP	4148
Total FP CONTRA	472
Total FP INCONS	2631
Total FP COMP	1045
Total FN	17703

Total Scores
MCC	0.646
Average MCC ± 95% Confidence Intervals	0.698 ± 0.014
Sensitivity	0.493
Positive Predictive Value	0.847
Nr of predictions	236

^top

2. Individual counts for CentroidAlifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	40	47842	13	0	13	0	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.97	66	57902	2	0	2	0	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	46	47534	6	0	6	0	47
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.73	0.96	80	59602	3	0	3	0	30
ASE_00012	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	69	73843	11	2	6	3	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.95	81	80516	4	1	3	0	53
ASE_00020	RNaseP_bact_a links to Rfam database...	0.60	0.41	0.87	52	73860	8	5	3	0	74
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.36	0.86	57	104130	12	2	7	3	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.79	0.63	1.00	78	82950	4	0	0	4	46
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.55	1.00	69	84597	3	0	0	3	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.93	65	70430	8	0	5	3	53
ASE_00037	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	71	59269	1	0	0	1	39
ASE_00038	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	59	53569	0	0	0	0	42
ASE_00040	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	88	78912	5	0	3	2	45
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	71	57551	8	0	8	0	37
ASE_00042	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.81	64	90021	15	0	15	0	81
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	74	54540	1	0	1	0	31
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	58	45391	2	0	2	0	31
ASE_00068	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	35	37634	6	0	6	0	50
ASE_00074	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	75	67821	1	0	0	1	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.56	0.35	0.89	57	108747	12	1	6	5	105
ASE_00077	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	45090	4	1	3	0	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	59	43012	0	0	0	0	24
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.67	39	71573	19	1	18	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	58	49711	1	0	1	0	39
ASE_00082	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.98	57	70442	7	0	1	6	59
ASE_00083	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	60	62420	1	0	1	0	50
ASE_00084	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.97	60	53566	2	1	1	0	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.61	0.39	0.97	56	88352	2	0	2	0	88
ASE_00090	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	59	55552	0	0	0	0	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.97	59	63485	2	1	1	0	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.68	1.00	82	64538	0	0	0	0	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	76	64183	2	0	2	0	43
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.37	0.76	41	64207	13	2	11	0	70
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.95	82	73067	4	0	4	0	45
ASE_00115	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	61	54553	1	0	1	0	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.96	46	62787	2	1	1	0	62
ASE_00123	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	51	38449	3	1	2	0	34
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	44	39296	0	0	0	0	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	53	40417	1	0	0	1	29
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	58	53243	0	0	0	0	42
ASE_00129	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	63	62772	0	0	0	0	48
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	45	39295	0	0	0	0	40
ASE_00134	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	58	50338	7	0	7	0	37
ASE_00135	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	47	63130	13	0	13	0	62
ASE_00136	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.95	57	48145	3	0	3	0	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.91	50	48461	6	0	5	1	48
ASE_00138	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	56	40413	1	1	0	0	25
ASE_00140	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.91	50	70821	5	3	2	0	75
ASE_00142	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.97	84	67074	5	0	3	2	38
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	84	70789	3	0	3	0	40
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.26	0.45	19	57588	23	4	19	0	54
ASE_00163	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.97	59	53240	2	1	1	0	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	52919	2	0	1	1	46
ASE_00170	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	58	48764	6	1	5	0	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	59	48456	2	0	1	1	35
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.95	54	58939	3	2	1	0	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	48	61017	10	1	9	0	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	55	59967	9	1	8	0	52
ASE_00179	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.93	50	44199	5	2	2	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	57	51301	2	1	1	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.93	57	57569	6	1	3	2	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.93	56	84195	4	1	3	0	80
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	58	61365	2	1	1	0	55
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	60	54554	1	0	1	0	42
ASE_00185	RNaseP_bact_a links to Rfam database...	0.63	0.41	0.96	53	73481	2	1	1	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	73	78923	10	0	7	3	59
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.56	1.00	50	45401	2	0	0	2	40
ASE_00197	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	72	89170	12	0	11	1	73
ASE_00198	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.97	61	52587	2	0	2	0	41
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.58	0.98	56	46608	1	0	1	0	40
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.88	67	93885	10	0	9	1	81
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	56	56222	3	1	1	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.37	0.84	37	48472	7	0	7	0	62
ASE_00216	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	55	39285	0	0	0	0	27
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	62	40407	2	0	1	1	28
ASE_00221	RNaseP_bact_a links to Rfam database...	0.84	0.73	0.97	85	64532	3	0	3	0	32
ASE_00228	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.88	53	46911	8	3	4	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	52	42433	3	0	1	2	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.87	46	47842	7	0	7	0	50
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	57	38444	2	2	0	0	27
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.82	54	75400	12	5	7	0	75
ASE_00238	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	46	64200	15	3	12	0	68
ASE_00241	RNaseP_bact_a links to Rfam database...	0.84	0.72	0.97	63	43891	2	0	2	0	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.77	0.99	86	60988	3	0	1	2	26
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.72	0.99	82	62398	2	0	1	1	32
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.98	57	36798	1	0	1	0	25
ASE_00255	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.79	53	74624	14	0	14	0	77
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	49	50983	8	2	6	0	48
ASE_00263	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	63	70436	1	1	0	0	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	59	45091	1	0	0	1	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.56	0.35	0.90	45	72340	6	0	5	1	83
ASE_00274	RNaseP_bact_a links to Rfam database...	0.65	0.47	0.91	48	55558	5	3	2	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.83	43	48153	9	2	7	0	48
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	64	53234	3	0	3	0	37
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.97	58	51943	2	1	1	0	40
ASE_00281	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.97	59	44490	2	0	2	0	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	64	77751	0	0	0	0	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	58	61716	2	0	2	0	49
ASE_00284	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.98	60	58250	1	0	1	0	48
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	68	68934	4	2	2	0	54
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	59	46605	1	0	1	0	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.83	55	54880	11	0	11	0	48
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.98	90	81718	3	0	2	1	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	89	114388	5	0	4	1	82
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	82	91717	8	1	6	1	63
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	42	52924	9	2	7	0	56
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	61	67465	2	1	1	0	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.79	0.63	0.99	74	80125	8	0	1	7	44
ASE_00328	RNaseP_bact_b links to Rfam database...	0.78	0.62	0.99	69	72701	6	0	1	5	43
ASE_00332	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.94	74	81731	5	0	5	0	64
ASE_00335	RNaseP_bact_b links to Rfam database...	0.74	0.59	0.92	69	75391	13	0	6	7	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	52	46000	8	0	4	4	33
ASE_00342	RNaseP_bact_a links to Rfam database...	0.86	0.75	0.99	86	62394	1	0	1	0	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	54	57915	2	1	0	1	53
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.42	1.00	53	75413	0	0	0	0	74
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.58	0.98	53	48151	2	0	1	1	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.88	53	51300	7	0	7	0	41
ASE_00364	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	56	54222	7	1	6	0	49
ASE_00366	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	57	58589	7	1	6	0	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	61	43010	1	0	0	1	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	64	55880	1	0	1	0	43
ASE_00370	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.96	50	41853	2	0	2	0	34
ASE_00372	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	57	51945	1	0	1	0	43
ASE_00374	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	58	44792	0	0	0	0	30
ASE_00376	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	58	56891	4	0	4	0	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	53	57570	7	1	6	0	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.96	54	46000	3	1	1	1	35
ASE_00382	RNaseP_bact_a links to Rfam database...	0.85	0.73	0.98	61	41843	2	0	1	1	23
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	62	54553	0	0	0	0	43
ASE_00384	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.97	57	48457	2	1	1	0	35
ASE_00386	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.98	54	50348	1	0	1	0	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	51	55887	7	0	7	0	53
ASE_00388	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	55	45697	2	0	1	1	34
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	55	42135	5	2	3	0	30
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	54	47835	6	0	6	0	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	59	46911	1	0	1	0	34
ASE_00395	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	53	41558	5	0	5	0	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	57	41558	1	0	1	0	26
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	54	55889	2	0	2	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	64	57905	2	0	1	1	42
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.95	56	76969	3	1	2	0	70
ASE_00402	RNaseP_bact_a links to Rfam database...	0.79	0.62	1.00	53	42433	0	0	0	0	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	61	55883	1	0	1	0	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	56	43014	2	0	1	1	29
ASE_00406	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	57	48770	1	0	1	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.65	0.54	0.77	48	49393	14	6	8	0	41
ASE_00412	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.72	42	58253	16	2	14	0	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	52	44495	5	3	1	1	29
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	40	54895	11	0	11	0	63
ASE_00416	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	74	77341	6	1	5	0	53
ASE_00419	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.88	56	54882	8	3	5	0	47
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	46908	11	0	10	1	41
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	72	56871	11	0	10	1	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	80	76547	9	1	8	0	45
ASE_00430	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	55	46914	2	0	2	0	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.56	0.46	0.68	62	79310	29	0	29	0	73
ASE_00441	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.94	46	64212	4	0	3	1	66
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	79	64177	5	0	5	0	33
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.95	82	70790	4	0	4	0	43
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.72	183	1620647	90	6	64	20	311
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.47	0.34	0.64	178	1762223	133	11	91	31	341
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.73	171	1445616	97	6	57	34	291
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.49	0.37	0.66	192	1805657	126	13	88	25	329
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.40	0.80	201	1627859	78	6	44	28	301
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.51	0.37	0.71	190	1988747	113	10	68	35	327
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.48	0.34	0.67	161	1769781	123	8	71	44	316
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.43	0.30	0.61	155	1892229	131	20	81	30	359
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.51	0.36	0.72	181	1586621	96	8	61	27	317
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.53	0.38	0.74	192	1584829	102	6	63	33	309
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.54	0.40	0.72	200	1615226	107	10	67	30	303
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.53	0.39	0.73	196	1675098	99	8	63	28	311
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.71	180	1579501	100	8	64	28	302
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.58	0.41	0.83	208	1640515	64	4	39	21	298
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.55	0.40	0.75	199	1611646	93	8	57	28	297
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.50	0.37	0.69	182	1626042	112	11	71	30	316
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.33	0.72	176	2126710	109	5	62	42	358
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.52	0.39	0.70	180	1606270	126	11	67	48	284
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.51	0.38	0.68	189	1615224	117	8	82	27	307
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.49	0.34	0.70	169	1665982	103	5	69	29	322
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.52	0.38	0.72	184	1640510	108	6	66	36	299
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.51	0.38	0.69	181	1636884	113	8	72	33	300
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.74	180	1638713	102	7	55	40	306
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.85	295	945652	81	5	48	28	109
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.50	0.36	0.69	179	1606270	108	8	71	29	324
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.49	0.36	0.67	183	1593733	116	11	78	27	323
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.55	0.40	0.76	205	1693451	88	6	58	24	310
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
RFA_00599	Telomerase-vert links to Rfam database...	0.89	0.83	0.96	92	101379	9	1	3	5	19
RFA_00601	Telomerase-vert links to Rfam database...	0.90	0.86	0.93	98	99130	13	1	6	6	16
RFA_00602	Telomerase-vert links to Rfam database...	0.87	0.84	0.91	97	101368	18	1	9	8	19
TMR_00017	tmRNA links to Rfam database...	0.80	0.65	0.99	66	67094	1	0	1	0	36
TMR_00018	tmRNA links to Rfam database...	0.65	0.54	0.78	50	64556	15	5	9	1	42
TMR_00038	tmRNA links to Rfam database...	0.68	0.56	0.82	62	71177	15	5	9	1	48
TMR_00042	tmRNA links to Rfam database...	0.66	0.53	0.83	52	62772	12	4	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.53	0.45	0.63	43	62767	26	4	21	1	53
TMR_00048	tmRNA links to Rfam database...	0.66	0.53	0.82	50	64919	12	7	4	1	45
TMR_00080	tmRNA links to Rfam database...	0.63	0.52	0.77	50	70435	15	8	7	0	46
TMR_00082	tmRNA links to Rfam database...	0.66	0.56	0.78	54	67827	18	7	8	3	42
TMR_00123	tmRNA links to Rfam database...	0.79	0.64	0.97	65	66363	3	1	1	1	36
TMR_00137	tmRNA links to Rfam database...	0.68	0.55	0.83	49	61016	13	6	4	3	40
TMR_00142	tmRNA links to Rfam database...	0.65	0.46	0.92	47	70825	11	0	4	7	55
TMR_00207	tmRNA links to Rfam database...	0.74	0.57	0.97	59	72329	4	1	1	2	44
TMR_00257	tmRNA links to Rfam database...	0.78	0.64	0.94	63	67094	4	4	0	0	35
TMR_00271	tmRNA links to Rfam database...	0.55	0.44	0.68	40	64202	24	6	13	5	51
TMR_00332	tmRNA links to Rfam database...	0.67	0.48	0.92	48	67109	5	1	3	1	51
TMR_00366	tmRNA links to Rfam database...	0.70	0.49	1.00	49	67847	7	0	0	7	51
TMR_00378	tmRNA links to Rfam database...	0.63	0.46	0.87	45	67844	15	1	6	8	52
TMR_00399	tmRNA links to Rfam database...	0.60	0.49	0.74	46	64918	16	6	10	0	48
TMR_00404	tmRNA links to Rfam database...	0.60	0.50	0.72	46	67464	21	3	15	3	46
TMR_00427	tmRNA links to Rfam database...	0.63	0.45	0.86	44	67477	8	7	0	1	53
TMR_00443	tmRNA links to Rfam database...	0.73	0.58	0.92	60	67096	6	0	5	1	44
TMR_00451	tmRNA links to Rfam database...	0.63	0.55	0.73	49	63479	20	10	8	2	40
TMR_00458	tmRNA links to Rfam database...	0.65	0.54	0.79	50	63483	15	6	7	2	43
TMR_00469	tmRNA links to Rfam database...	0.79	0.69	0.91	69	64544	10	6	1	3	31
TMR_00472	tmRNA links to Rfam database...	0.72	0.64	0.82	62	64544	15	7	7	1	35
TMR_00519	tmRNA links to Rfam database...	0.63	0.53	0.75	50	63123	19	5	12	2	45
TMR_00520	tmRNA links to Rfam database...	0.63	0.48	0.81	48	63131	13	3	8	2	51
TMR_00522	tmRNA links to Rfam database...	0.62	0.47	0.82	46	63134	15	4	6	5	51
TMR_00528	tmRNA links to Rfam database...	0.67	0.54	0.84	52	63128	15	4	6	5	45
TMR_00540	tmRNA links to Rfam database...	0.60	0.45	0.81	47	73478	11	4	7	0	57
TMR_00568	tmRNA links to Rfam database...	0.77	0.68	0.87	67	60649	15	1	9	5	32
TMR_00571	tmRNA links to Rfam database...	0.80	0.71	0.91	70	60649	12	1	6	5	29
TMR_00580	tmRNA links to Rfam database...	0.78	0.68	0.89	68	60650	13	2	6	5	32
TMR_00584	tmRNA links to Rfam database...	0.80	0.70	0.91	68	61000	10	3	4	3	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.66	0.83	64	60998	18	6	7	5	33
TMR_00616	tmRNA links to Rfam database...	0.74	0.65	0.85	64	67086	12	7	4	1	35
TMR_00699	tmRNA links to Rfam database...	0.66	0.49	0.89	50	67105	6	1	5	0	52
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	12	2	10	0	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.57	0.90	56	67466	6	2	4	0	43

^top

Performance of Mastr(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(20)

Total Base Pair Counts
Total TP	61
Total TN	57057377
Total FP	28
Total FP CONTRA	4
Total FP INCONS	23
Total FP COMP	1
Total FN	34847

Total Scores
MCC	0.035
Average MCC ± 95% Confidence Intervals	0.012 ± 0.012
Sensitivity	0.002
Positive Predictive Value	0.693
Nr of predictions	236

^top

2. Individual counts for Mastr(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	117
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59685	0	0	0	0	110
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80601	0	0	0	0	134
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104196	0	0	0	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	133
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	90100	0	0	0	0	145
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	119
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108811	0	0	0	0	162
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71631	0	0	0	0	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88410	0	0	0	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	120
ASE_00104	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	119
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73153	0	0	0	0	127
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	108
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	124
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60031	0	0	0	0	107
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84255	0	0	0	0	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89253	0	0	0	0	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52650	0	0	0	0	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93961	0	0	0	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	90
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	117
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	112
ASE_00248	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	114
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74691	0	0	0	0	130
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61776	0	0	0	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69006	0	0	0	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00294	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	114481	0	0	0	0	171
ASE_00296	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	91806	0	0	0	0	145
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72771	0	0	0	0	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	115
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58653	0	0	0	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77028	0	0	0	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	109
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76636	0	0	0	0	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1620900	0	0	0	0	494
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1762503	0	0	0	0	519
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445850	0	0	0	0	462
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1805950	0	0	0	0	521
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1628110	0	0	0	0	502
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1989015	0	0	0	0	517
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1770021	0	0	0	0	477
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1892485	0	0	0	0	514
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1586871	0	0	0	0	498
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1585090	0	0	0	0	501
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615503	0	0	0	0	503
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1675365	0	0	0	0	507
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1579753	0	0	0	0	482
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1640766	0	0	0	0	506
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1611910	0	0	0	0	496
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1626306	0	0	0	0	498
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126953	0	0	0	0	534
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606528	0	0	0	0	464
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615503	0	0	0	0	496
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1666225	0	0	0	0	491
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1640766	0	0	0	0	483
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1637145	0	0	0	0	481
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1638955	0	0	0	0	486
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.00	0.00	0.00	0	946000	0	0	0	0	404
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606528	0	0	0	0	503
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1594005	0	0	0	0	506
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1693720	0	0	0	0	515
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3302	20	3	16	1	25
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_01020	Purine links to Rfam database...	0.81	0.65	1.00	15	2263	0	0	0	0	8
PDB_01073	SAM links to Rfam database...	0.34	0.24	0.50	8	4355	8	1	7	0	26
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
TMR_00017	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	102
TMR_00018	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	92
TMR_00038	tmRNA links to Rfam database...	0.00	0.00	0.00	0	71253	0	0	0	0	110
TMR_00042	tmRNA links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	98
TMR_00046	tmRNA links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	96
TMR_00048	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64980	0	0	0	0	95
TMR_00080	tmRNA links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	96
TMR_00082	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	96
TMR_00123	tmRNA links to Rfam database...	0.00	0.00	0.00	0	66430	0	0	0	0	101
TMR_00137	tmRNA links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	89
TMR_00142	tmRNA links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	102
TMR_00207	tmRNA links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	103
TMR_00257	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	98
TMR_00271	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	91
TMR_00332	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	99
TMR_00366	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	100
TMR_00378	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	97
TMR_00399	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64980	0	0	0	0	94
TMR_00404	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	92
TMR_00427	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	97
TMR_00443	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	104
TMR_00451	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	89
TMR_00458	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	93
TMR_00469	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	100
TMR_00472	tmRNA links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	97
TMR_00519	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	95
TMR_00520	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	99
TMR_00522	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	97
TMR_00528	tmRNA links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	97
TMR_00540	tmRNA links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	104
TMR_00568	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	99
TMR_00571	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	99
TMR_00580	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	100
TMR_00584	tmRNA links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	97
TMR_00586	tmRNA links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	97
TMR_00616	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	99
TMR_00699	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	102
TMR_00702	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	100
TMR_00703	tmRNA links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	99

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidAlifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(20)

2. Individual counts for CentroidAlifold(20) [ download as .csv ]

Performance of Mastr(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(20)

2. Individual counts for Mastr(20) [ download as .csv ]