CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	CentroidAlifold(seed)		Afold
MCC	0.750	>	0.483
Average MCC ± 95% Confidence Intervals	0.712 ± 0.014	>	0.508 ± 0.018
Sensitivity	0.620	>	0.474
Positive Predictive Value	0.907	>	0.493
Total TP	32982	>	25220
Total TN	89768779	>	89753952
Total FP	4618	<	29365
Total FP CONTRA	570	<	3581
Total FP INCONS	2806	<	22384
Total FP COMP	1242	<	3400
Total FN	20187	<	27949
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of CentroidAlifold(seed) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidAlifold(seed) and Afold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidAlifold(seed) and Afold).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidAlifold(seed) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidAlifold(seed) and Afold).

^top

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

Total Base Pair Counts
Total TP	32982
Total TN	89768779
Total FP	4618
Total FP CONTRA	570
Total FP INCONS	2806
Total FP COMP	1242
Total FN	20187

Total Scores
MCC	0.750
Average MCC ± 95% Confidence Intervals	0.712 ± 0.014
Sensitivity	0.620
Positive Predictive Value	0.907
Nr of predictions	306

^top

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.81	0.65	1.00	49	34142	0	0	0	0	26
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	49	35462	0	0	0	0	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	47842	9	0	9	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.97	67	57901	2	0	2	0	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	41	47532	13	0	13	0	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.83	0.71	0.98	78	59605	2	0	2	0	32
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.67	0.94	45	26058	3	0	3	0	22
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	73	73843	7	1	3	3	50
ASE_00014	RNaseP_arch links to Rfam database...	0.74	0.58	0.95	61	54221	3	0	3	0	45
ASE_00017	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	50991	5	1	4	0	20
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.93	54	73862	4	3	1	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.90	71	104117	11	2	6	3	89
ASE_00023	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.63	45	84184	28	8	18	2	82
ASE_00028	RNaseP_bact_b links to Rfam database...	0.80	0.64	1.00	81	84585	3	0	0	3	45
ASE_00029	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.61	41	82961	30	4	22	4	81
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.90	71	85412	8	0	8	0	74
ASE_00032	RNaseP_bact_a links to Rfam database...	0.38	0.27	0.54	32	80141	30	1	26	3	86
ASE_00033	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.99	79	64900	3	1	0	2	42
ASE_00036	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.99	76	75778	1	1	0	0	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	78	59262	1	0	0	1	32
ASE_00038	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	53573	0	0	0	0	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	79	78924	2	0	0	2	54
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.92	69	57555	6	0	6	0	39
ASE_00042	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.87	71	90018	11	0	11	0	74
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	1.00	73	54542	0	0	0	0	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	64	50329	10	0	10	0	39
ASE_00047	RNaseP_bact_a links to Rfam database...	0.70	0.52	0.93	68	74232	5	0	5	0	62
ASE_00053	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.92	72	79323	6	3	3	0	61
ASE_00064	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45398	0	0	0	0	36
ASE_00066	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	73	72317	1	0	0	1	57
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.78	32	37634	9	0	9	0	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	82	67814	1	0	0	1	37
ASE_00075	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.92	71	108734	11	1	5	5	91
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.48	1.00	57	68208	0	0	0	0	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	55	45093	2	1	1	0	31
ASE_00078	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	57	43014	0	0	0	0	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	47	55555	9	0	9	0	53
ASE_00080	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.66	37	71575	19	1	18	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	49713	0	0	0	0	40
ASE_00082	RNaseP_bact_a links to Rfam database...	0.66	0.43	1.00	50	70450	6	0	0	6	66
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	57	62424	0	0	0	0	53
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	56	53571	1	1	0	0	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.95	54	88353	3	0	3	0	90
ASE_00090	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	55554	0	0	0	0	44
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	63489	1	1	0	0	57
ASE_00096	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	51	63489	6	0	6	0	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.99	80	64180	1	0	1	0	39
ASE_00111	RNaseP_nuc links to Rfam database...	0.83	0.74	0.93	42	50041	3	1	2	0	15
ASE_00112	RNaseP_bact_a links to Rfam database...	0.50	0.34	0.71	40	75410	16	0	16	0	76
ASE_00115	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	54560	0	0	0	0	46
ASE_00116	RNaseP_arch links to Rfam database...	0.86	0.76	0.98	50	31575	1	0	1	0	16
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.44	0.98	48	62786	1	1	0	0	60
ASE_00120	RNaseP_arch links to Rfam database...	0.79	0.64	0.98	60	46910	2	0	1	1	34
ASE_00121	RNaseP_arch links to Rfam database...	0.81	0.66	0.98	61	45088	1	0	1	0	31
ASE_00122	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	43309	1	0	0	1	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.68	0.48	0.95	41	38460	2	0	2	0	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.95	41	39297	2	0	2	0	47
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	54	53247	0	0	0	0	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	56	62779	0	0	0	0	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.97	37	39302	1	1	0	0	48
ASE_00132	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	56	50346	1	1	0	0	39
ASE_00134	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	51	50346	6	0	6	0	44
ASE_00135	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.74	42	63133	15	0	15	0	67
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	48148	3	0	3	0	38
ASE_00137	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.93	52	48460	4	0	4	0	46
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	51	40419	0	0	0	0	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	56	54229	0	0	0	0	48
ASE_00140	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	54	70819	3	3	0	0	71
ASE_00145	RNaseP_arch links to Rfam database...	0.77	0.59	1.00	66	70059	0	0	0	0	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.97	77	70797	2	0	2	0	47
ASE_00148	RNaseP_arch links to Rfam database...	0.62	0.41	0.95	63	112509	3	0	3	0	91
ASE_00151	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	69	51928	6	5	1	0	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.53	0.85	39	57584	7	1	6	0	34
ASE_00154	RNaseP_arch links to Rfam database...	0.75	0.59	0.95	63	65275	3	0	3	0	44
ASE_00155	RNaseP_arch links to Rfam database...	0.68	0.46	1.00	66	93462	0	0	0	0	76
ASE_00163	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	55	53246	0	0	0	0	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.69	0.50	0.94	51	52921	4	1	2	1	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	60677	5	1	4	0	20
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	51	57233	7	1	6	0	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	56	48772	0	0	0	0	37
ASE_00171	RNaseP_bact_a links to Rfam database...	0.76	0.59	1.00	55	48461	1	0	0	1	39
ASE_00172	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	56	58939	1	1	0	0	50
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.82	47	61018	10	1	9	0	62
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.51	0.98	55	59975	1	1	0	0	52
ASE_00176	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	59976	0	0	0	0	55
ASE_00179	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	53	44199	2	0	1	1	31
ASE_00180	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51305	1	1	0	0	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	55	57573	3	2	0	1	51
ASE_00182	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.95	54	84198	3	0	3	0	82
ASE_00185	RNaseP_bact_a links to Rfam database...	0.64	0.41	0.98	53	73482	1	1	0	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	67	78925	14	0	11	3	65
ASE_00187	RNaseP_arch links to Rfam database...	0.69	0.51	0.92	59	68571	5	1	4	0	56
ASE_00190	RNaseP_bact_b links to Rfam database...	0.74	0.54	1.00	49	45402	3	0	0	3	41
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.35	0.75	47	84603	20	0	16	4	86
ASE_00196	RNaseP_arch links to Rfam database...	0.82	0.69	0.96	52	31572	2	0	2	0	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.86	67	89175	12	0	11	1	78
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	53	46608	4	2	2	0	43
ASE_00209	RNaseP_arch links to Rfam database...	0.83	0.69	0.98	61	43009	1	0	1	0	27
ASE_00210	RNaseP_arch links to Rfam database...	0.74	0.65	0.86	42	27212	9	0	7	2	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	66	93887	9	0	8	1	82
ASE_00213	RNaseP_arch links to Rfam database...	0.83	0.71	0.98	47	27213	3	0	1	2	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	56	56223	2	1	0	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	32	48477	7	0	7	0	67
ASE_00216	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	39286	0	0	0	0	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	60	40410	1	0	0	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	82	64537	1	0	1	0	35
ASE_00222	RNaseP_arch links to Rfam database...	0.65	0.42	1.00	66	112035	0	0	0	0	91
ASE_00227	RNaseP_bact_a links to Rfam database...	0.57	0.43	0.76	57	78928	18	0	18	0	76
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.91	49	46917	6	3	2	1	37
ASE_00229	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	53	42433	2	0	0	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.78	43	47840	12	0	12	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	55	38448	0	0	0	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	55	75408	3	3	0	0	74
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.73	0.93	41	45709	3	1	2	0	15
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	50	64203	8	2	6	0	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.79	45	46608	12	0	12	0	48
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	56	43899	1	0	1	0	31
ASE_00246	RNaseP_nuc links to Rfam database...	0.79	0.67	0.92	45	48156	4	1	3	0	22
ASE_00247	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	54236	5	1	4	0	20
ASE_00252	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.92	72	115362	10	2	4	4	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	36802	0	0	0	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.80	66	74609	16	0	16	0	64
ASE_00257	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.91	50	50985	5	1	4	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	56	70443	1	1	0	0	64
ASE_00264	RNaseP_nuc links to Rfam database...	0.58	0.40	0.85	40	49094	8	0	7	1	60
ASE_00267	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	45094	0	0	0	0	32
ASE_00270	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	43	72342	6	0	5	1	85
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	55	55553	3	3	0	0	48
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	52	48149	4	3	1	0	39
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	53245	1	0	1	0	46
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	56	51945	2	1	1	0	42
ASE_00282	RNaseP_bact_a links to Rfam database...	0.66	0.45	0.98	57	77757	1	1	0	0	70
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	61719	1	0	1	0	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	57	58253	1	1	0	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.68	0.47	1.00	57	68949	0	0	0	0	65
ASE_00286	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	46609	0	0	0	0	36
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	0	6	0	52
ASE_00288	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.96	54	46000	2	2	0	0	39
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.95	73	100948	4	0	4	0	84
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	80	81730	1	0	0	1	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	81	114398	2	0	2	0	90
ASE_00295	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	77	73843	0	0	0	0	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	79	91725	3	0	2	1	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	52922	9	2	7	0	54
ASE_00298	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	67471	1	1	0	0	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.70	44	49392	19	0	19	0	56
ASE_00313	RNaseP_nuc links to Rfam database...	0.50	0.34	0.75	30	62441	14	2	8	4	59
ASE_00328	RNaseP_bact_b links to Rfam database...	0.83	0.70	1.00	78	72693	5	0	0	5	34
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.48	0.91	43	56233	5	0	4	1	47
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	83	81727	0	0	0	0	55
ASE_00337	RNaseP_nuc links to Rfam database...	0.57	0.44	0.76	31	39299	18	0	10	8	40
ASE_00338	RNaseP_nuc links to Rfam database...	0.51	0.33	0.80	32	66390	8	0	8	0	66
ASE_00340	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	48	46005	7	0	3	4	37
ASE_00342	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	62399	0	0	0	0	33
ASE_00343	RNaseP_bact_a links to Rfam database...	0.37	0.27	0.51	31	83375	32	2	28	2	82
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	16	0	16	0	49
ASE_00359	RNaseP_arch links to Rfam database...	0.77	0.61	0.98	49	42728	2	0	1	1	31
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.98	55	75410	1	1	0	0	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.78	0.62	1.00	56	48149	1	0	0	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.89	51	51303	6	0	6	0	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	51	54228	6	1	5	0	54
ASE_00366	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	52	58595	6	2	4	0	46
ASE_00367	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	56	43015	1	0	0	1	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	52	41852	1	0	1	0	32
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51948	1	0	1	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	53	44797	0	0	0	0	35
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.51	1.00	56	60322	1	0	0	1	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	53	56896	4	0	4	0	52
ASE_00379	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	56	46000	1	0	0	1	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	56	54890	0	0	0	0	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41851	1	0	0	1	30
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	48460	0	0	0	0	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	45	41855	5	0	5	0	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	50346	0	0	0	0	39
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.87	48	55890	7	0	7	0	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45700	1	0	0	1	36
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	53	42141	1	0	1	0	32
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	52	47838	5	0	5	0	41
ASE_00394	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	54	46917	0	0	0	0	39
ASE_00395	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41562	0	0	0	0	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	54	41562	0	0	0	0	29
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	54	55891	0	0	0	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	55	57915	1	0	0	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.96	50	76976	2	1	1	0	76
ASE_00402	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	42431	0	0	0	0	30
ASE_00403	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	43016	1	0	0	1	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	49395	11	5	6	0	40
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.90	46	44500	7	2	3	2	35
ASE_00415	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.80	41	54895	10	0	10	0	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.94	78	77338	5	1	4	0	49
ASE_00417	RNaseP_arch links to Rfam database...	0.80	0.65	0.98	65	54549	1	0	1	0	35
ASE_00418	RNaseP_arch links to Rfam database...	0.81	0.67	0.98	50	38730	1	0	1	0	25
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	2	4	0	52
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	54	46915	3	0	2	1	40
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.68	44	61010	22	5	16	1	64
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.94	78	76553	5	1	4	0	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	53	46917	1	0	1	0	44
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.44	0.71	42	46301	17	7	10	0	53
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	67	68190	14	0	8	6	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.67	54	79320	27	0	27	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.92	49	66013	4	1	3	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.96	49	64210	3	0	2	1	63
ASE_00447	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	60296	0	0	0	0	34
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.95	77	64180	4	0	4	0	35
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	80	70793	3	0	3	0	45
CRW_00013	Intron_gpI links to Rfam database...	0.37	0.21	0.65	24	103703	17	1	12	4	91
CRW_00016	Intron_gpI links to Rfam database...	0.36	0.20	0.65	24	77384	16	1	12	3	96
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.90	0.86	0.95	393	1085187	55	6	15	34	65
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	385	1170801	38	9	20	9	85
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1107413	39	9	20	10	82
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	372	1172342	41	9	23	9	101
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	381	1181541	41	9	22	10	95
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	375	1108900	39	9	21	9	82
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.87	0.80	0.93	373	1178481	41	4	22	15	92
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.92	379	1135867	41	9	23	9	84
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1201614	41	9	21	11	95
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	372	1152519	39	9	21	9	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	376	1180010	40	9	21	10	95
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.94	374	1190796	41	4	22	15	94
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	340	1082268	59	9	39	11	105
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.78	0.91	368	1178477	47	9	26	12	105
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	383	1207823	39	9	20	10	92
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1198515	40	9	21	10	97
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	372	1105927	39	9	20	10	81
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.92	379	1218731	41	9	22	10	105
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	382	1198513	40	9	22	9	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	374	1192336	40	9	21	10	94
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	373	1111883	39	9	21	9	82
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.90	358	1122354	48	8	31	9	104
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.92	361	1085207	41	8	25	8	85
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.92	371	1114869	40	9	22	9	86
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	363	1110392	50	13	27	10	90
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	347	1129872	48	8	29	11	103
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	371	1180013	46	9	23	14	93
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	357	1117863	52	9	31	12	96
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.92	368	1144943	39	9	21	9	96
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.84	316	1015651	66	12	46	8	116
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	360	1131361	50	9	30	11	96
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	361	1117862	46	11	26	9	97
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	367	1189245	50	10	31	9	109
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.82	322	1123856	83	13	59	11	139
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.77	177	1579523	74	4	49	21	305
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.54	0.37	0.78	185	1611673	73	4	48	21	311
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.69	158	2126723	93	6	66	21	376
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.76	182	1615264	78	4	53	21	314
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.52	0.36	0.74	177	1665987	83	5	56	22	318
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1116361	39	8	22	9	84
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	360	1094074	43	2	24	17	85
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	364	1119366	44	2	24	18	88
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.88	0.82	0.94	365	1098513	44	3	22	19	81
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.33	0.77	27	36280	11	1	7	3	54
CRW_00613	Intron_gpI links to Rfam database...	0.48	0.32	0.71	25	34945	14	0	10	4	53
CRW_00614	Intron_gpI links to Rfam database...	0.43	0.30	0.63	17	121744	16	2	8	6	40
CRW_00619	Intron_gpI links to Rfam database...	0.53	0.30	0.92	22	165001	5	0	2	3	51
CRW_00620	Intron_gpI links to Rfam database...	0.44	0.29	0.69	18	150949	18	0	8	10	45
CRW_00621	Intron_gpI links to Rfam database...	0.40	0.27	0.61	19	153150	14	3	9	2	52
CRW_00623	Intron_gpI links to Rfam database...	0.49	0.29	0.83	24	129766	9	1	4	4	59
CRW_00633	Intron_gpI links to Rfam database...	0.31	0.17	0.58	18	63515	14	2	11	1	88
CRW_00670	Intron_gpI links to Rfam database...	0.49	0.28	0.89	33	70088	8	0	4	4	87
CRW_00671	Intron_gpI links to Rfam database...	0.50	0.28	0.89	33	62798	8	0	4	4	84
CRW_00672	Intron_gpI links to Rfam database...	0.51	0.30	0.89	33	72353	8	0	4	4	78
CRW_00674	Intron_gpI links to Rfam database...	0.29	0.16	0.54	20	83399	20	6	11	3	104
CRW_00676	Intron_gpI links to Rfam database...	0.35	0.17	0.69	20	93499	20	0	9	11	95
CRW_00692	Intron_gpI links to Rfam database...	0.39	0.22	0.69	20	68606	20	0	9	11	70
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.50	0.35	0.72	168	1636913	92	3	61	28	313
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.85	0.77	0.93	344	1215650	51	2	24	25	102
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.80	0.74	0.87	297	945660	69	2	41	26	107
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	303	1201687	92	4	31	57	81
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	353	1137401	53	5	27	21	94
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.81	0.74	0.88	291	1152590	94	3	37	54	103
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.67	141	1401765	92	7	62	23	329
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.89	358	1117856	57	12	34	11	112
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.48	0.33	0.70	167	1606289	89	4	68	17	336
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.35	0.77	179	1593773	71	4	49	18	327
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.86	0.81	0.92	351	977520	61	3	27	31	83
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.81	0.72	0.92	356	1073456	57	6	27	24	139
PDB_00716	HDV_ribozyme links to Rfam database...	0.75	0.61	0.93	14	2686	1	0	1	0	9
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.40	0.84	32	26990	6	1	5	0	49
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.91	0.83	1.00	20	2258	0	0	0	0	4
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.78	0.66	0.92	354	1500393	66	5	26	35	181
PDB_00919	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	36	44201	18	0	16	2	67
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.63	0.90	344	1471089	68	3	34	31	203
PDB_01092	glmS links to Rfam database...	0.72	0.58	0.91	30	10120	4	0	3	1	22
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.78	0.65	0.92	368	1606129	52	6	25	21	194
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.79	0.68	0.93	367	1433576	53	2	26	25	173
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.70	0.92	368	1204728	49	8	24	17	159
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.71	0.90	348	1117874	63	6	32	25	143
RFA_00597	Telomerase-vert links to Rfam database...	0.73	0.64	0.83	70	97819	19	0	14	5	39
RFA_00599	Telomerase-vert links to Rfam database...	0.85	0.73	0.99	81	101393	4	0	1	3	30
RFA_00601	Telomerase-vert links to Rfam database...	0.82	0.71	0.95	81	99150	9	0	4	5	33
RFA_00602	Telomerase-vert links to Rfam database...	0.81	0.71	0.93	82	101387	10	0	6	4	34
RFA_00632	HDV_ribozyme links to Rfam database...	0.74	0.64	0.86	18	4074	3	2	1	0	10
RFA_00636	HDV_ribozyme links to Rfam database...	0.78	0.68	0.90	19	3984	2	2	0	0	9
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	2006	0	0	0	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	1	2	0	7
RFA_00809	RydC links to Rfam database...	0.43	0.38	0.50	6	2133	6	0	6	0	10

^top

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	25220
Total TN	89753952
Total FP	29365
Total FP CONTRA	3581
Total FP INCONS	22384
Total FP COMP	3400
Total FN	27949

Total Scores
MCC	0.483
Average MCC ± 95% Confidence Intervals	0.508 ± 0.018
Sensitivity	0.474
Positive Predictive Value	0.493
Nr of predictions	306

^top

2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.75	0.72	0.78	54	34122	23	3	12	8	21
ASE_00002	RNaseP_arch links to Rfam database...	0.62	0.62	0.63	45	35439	33	4	23	6	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.76	0.82	51	26044	13	0	11	2	16
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50965	74	6	51	17	46
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.59	81	104058	66	7	50	9	79
ASE_00023	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.69	81	84137	42	3	34	5	46
ASE_00028	RNaseP_bact_b links to Rfam database...	0.58	0.56	0.61	70	84551	54	4	41	9	56
ASE_00029	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.56	65	82912	55	5	46	4	57
ASE_00030	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	85	85357	50	5	44	1	60
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	62	80094	50	6	38	6	56
ASE_00033	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.36	38	64874	70	4	64	2	83
ASE_00036	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	52	75735	71	8	60	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	61	89969	73	3	67	3	84
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00046	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	50313	33	2	31	0	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	50	74188	68	4	63	1	80
ASE_00053	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	69	79278	61	12	42	7	64
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	71	72269	52	4	46	2	59
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	95	108679	46	3	34	9	67
ASE_00076	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	64	68160	42	7	34	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	55519	45	2	42	1	52
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00087	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	74	88288	54	5	43	6	70
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	57	63439	51	2	48	1	58
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00111	RNaseP_nuc links to Rfam database...	0.15	0.19	0.12	11	49992	89	31	52	6	46
ASE_00112	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	75364	25	5	13	7	32
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.24	0.23	16	31557	54	8	45	1	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00120	RNaseP_arch links to Rfam database...	0.37	0.35	0.38	33	46885	53	9	44	0	61
ASE_00121	RNaseP_arch links to Rfam database...	0.29	0.29	0.29	27	45058	65	8	57	0	65
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	24	43283	60	4	54	2	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	58	50314	34	7	24	3	37
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00139	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	80	54195	16	2	8	6	24
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00145	RNaseP_arch links to Rfam database...	0.40	0.40	0.40	44	70016	69	9	56	4	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00148	RNaseP_arch links to Rfam database...	0.63	0.60	0.65	93	112433	53	4	45	4	61
ASE_00151	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	25	51912	66	9	57	0	73
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00154	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	59	65240	45	4	38	3	48
ASE_00155	RNaseP_arch links to Rfam database...	0.50	0.48	0.52	68	93396	69	10	54	5	74
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	88	24	47	17	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	51	57192	52	6	42	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.64	61	59936	38	5	29	4	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	79	84128	49	6	42	1	57
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00187	RNaseP_arch links to Rfam database...	0.50	0.48	0.51	55	68528	58	7	45	6	60
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.40	0.38	0.42	50	84547	75	6	63	6	83
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.75	0.77	56	31553	21	2	15	4	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00209	RNaseP_arch links to Rfam database...	0.29	0.28	0.30	25	42989	57	4	53	0	63
ASE_00210	RNaseP_arch links to Rfam database...	0.61	0.62	0.60	40	27194	28	6	21	1	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	99	93827	39	3	32	4	49
ASE_00213	RNaseP_arch links to Rfam database...	0.72	0.71	0.73	47	27197	18	3	14	1	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00222	RNaseP_arch links to Rfam database...	0.56	0.55	0.56	87	111947	68	8	59	1	70
ASE_00227	RNaseP_bact_a links to Rfam database...	0.25	0.23	0.27	31	78888	84	6	78	0	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45676	92	25	52	15	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00240	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	52	46578	44	4	31	9	41
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00246	RNaseP_nuc links to Rfam database...	0.30	0.33	0.27	22	48123	71	17	43	11	45
ASE_00247	RNaseP_nuc links to Rfam database...	0.18	0.19	0.17	12	54213	88	15	45	28	52
ASE_00252	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	88	115284	71	5	63	3	80
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.79	0.90	79	49053	24	0	9	15	21
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	42	45969	48	6	39	3	51
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	97	100886	45	4	38	3	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	80	81689	43	2	39	2	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	117	114335	32	2	27	3	54
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	79	73801	42	8	32	2	52
ASE_00296	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.27	35	91676	98	8	87	3	110
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	49361	54	5	41	8	52
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	63	62396	45	4	18	23	26
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	64	56193	44	3	20	21	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	75	81682	55	2	51	2	63
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39265	50	6	31	13	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.63	0.72	62	66344	41	4	20	17	36
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00343	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.34	39	83321	88	9	67	12	74
ASE_00346	RNaseP_arch links to Rfam database...	0.31	0.30	0.32	29	48114	65	7	55	3	68
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	49	3	38	8	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00375	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	60280	31	1	24	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	54	54854	41	2	36	3	45
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	53	6	45	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38701	67	12	52	3	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00426	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	30	60967	78	7	71	0	78
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00431	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.56	47	46276	41	6	31	4	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.62	66	68159	48	7	33	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00438	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	50	65965	52	3	48	1	66
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	60274	55	1	51	3	64
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
CRW_00013	Intron_gpI links to Rfam database...	0.22	0.22	0.22	25	103625	113	13	77	23	90
CRW_00016	Intron_gpI links to Rfam database...	0.65	0.62	0.69	74	77313	47	5	29	13	46
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.77	0.79	351	1085158	132	17	75	40	107
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	228	1170758	252	20	209	23	242
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	208	1107368	260	31	209	20	248
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	240	1172289	233	26	191	16	233
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	259	1181483	231	27	184	20	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	226	1108849	247	24	206	17	231
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	214	1178420	264	32	214	18	251
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.63	0.64	291	1135826	182	20	141	21	172
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	274	1201566	212	26	159	27	202
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	193	1152465	282	35	228	19	273
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	293	1179965	180	30	128	22	178
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	248	1190745	226	28	175	23	220
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	127	1082216	323	37	276	10	318
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1178433	259	22	222	15	270
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.48	220	1207772	267	24	219	24	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	266	1198467	216	21	172	23	212
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1105880	289	44	232	13	281
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	274	1218666	234	21	180	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.45	210	1198459	274	34	223	17	268
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	188	1192291	278	39	222	17	280
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	196	1111850	260	40	200	20	259
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	231	1122302	237	43	175	19	231
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	258	1085174	195	26	143	26	188
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.48	213	1114826	258	28	204	26	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1110338	300	45	240	15	281
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	180	1129825	274	33	218	23	270
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	229	1179985	227	29	173	25	235
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	227	1117817	231	28	188	15	226
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	347	41	290	16	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	118	1015612	321	39	256	26	314
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.28	124	1131316	337	30	290	17	332
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.72	0.71	0.74	325	1117819	142	23	93	26	133
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.48	214	1189204	258	34	201	23	262
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123814	315	46	252	17	323
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.33	174	1579230	395	88	261	46	308
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	145	1611389	409	77	299	33	351
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	227	2126401	423	55	270	98	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.34	0.34	169	1615006	381	62	266	53	327
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	140	1665694	436	77	314	45	355
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.62	268	1116330	196	21	146	29	190
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	374	34	324	16	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	161	1119326	290	30	239	21	291
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.59	251	1098476	205	23	153	29	195
CRW_00610	Intron_gpI links to Rfam database...	0.42	0.42	0.43	34	36235	46	6	40	0	47
CRW_00613	Intron_gpI links to Rfam database...	0.46	0.42	0.51	33	34915	41	2	30	9	45
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	141	24	53	64	52
CRW_00619	Intron_gpI links to Rfam database...	0.38	0.42	0.34	31	164933	138	25	36	77	42
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.12	13	150869	161	32	61	68	50
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153108	157	13	53	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.29	0.32	24	129719	123	11	41	71	59
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.44	0.47	47	63445	58	10	44	4	59
CRW_00670	Intron_gpI links to Rfam database...	0.77	0.74	0.81	89	70015	26	0	21	5	31
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.64	0.68	75	62725	41	8	27	6	42
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.73	0.74	81	72281	36	10	18	8	30
CRW_00674	Intron_gpI links to Rfam database...	0.55	0.55	0.55	68	83312	61	8	48	5	56
CRW_00676	Intron_gpI links to Rfam database...	0.54	0.56	0.52	64	93406	75	17	41	17	51
CRW_00692	Intron_gpI links to Rfam database...	0.57	0.57	0.57	51	68545	54	15	24	15	39
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.22	0.22	0.21	107	1636633	462	78	327	57	374
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	165	1215603	304	24	228	52	281
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.26	0.25	0.26	103	945610	313	37	250	26	301
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.30	0.29	0.32	113	1201668	314	34	210	70	271
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	160	1137342	302	44	240	18	287
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.21	0.22	0.21	85	1152511	379	51	274	54	309
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.55	0.53	0.57	251	1401532	269	24	168	77	219
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.49	227	1117798	259	23	212	24	243
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	160	1606024	390	54	290	46	343
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	167	1593473	402	81	284	37	339
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.37	160	977470	284	42	229	13	274
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073408	220	17	174	29	249
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	25	1	23	1	23
PDB_00827	Intron_gpI links to Rfam database...	0.67	0.59	0.76	48	26965	16	0	15	1	33
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.82	0.71	0.94	17	2260	1	0	1	0	7
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	284	1500271	276	22	201	53	251
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	48	44163	45	3	39	3	55
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	191	1470959	352	45	275	32	356
PDB_01092	glmS links to Rfam database...	0.69	0.60	0.79	31	10114	11	1	7	3	21
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	306	1605999	254	32	191	31	256
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.63	313	1433471	221	15	172	34	227
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	228	1204659	250	31	210	9	299
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	237	1117812	242	21	190	31	254
RFA_00597	Telomerase-vert links to Rfam database...	0.51	0.51	0.51	56	97794	82	5	48	29	53
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.64	78	101353	66	16	28	22	33
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.11	0.08	12	99092	139	35	96	8	102
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	62	101344	91	18	51	22	54
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	18	0	16	2	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	17	2	14	1	16
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	5	0	4	1	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	10	3	5	2	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	6	0	2	4	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	5	1	0	4	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	16	2	13	1	16
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	12	1	10	1	10

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]