CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidHomfold‑LAST		NanoFolder
MCC	0.648	>	0.176
Average MCC ± 95% Confidence Intervals	0.641 ± 0.026	>	0.185 ± 0.028
Sensitivity	0.480	>	0.209
Positive Predictive Value	0.876	>	0.152
Total TP	5126	>	2233
Total TN	6519476	>	6510595
Total FP	998	<	12959
Total FP CONTRA	134	<	2314
Total FP INCONS	594	<	10188
Total FP COMP	270	<	457
Total FN	5552	<	8445
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidHomfold-LAST and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidHomfold‑LAST and NanoFolder).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidHomfold‑LAST and NanoFolder).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidHomfold-LAST and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidHomfold‑LAST and NanoFolder).

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Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

Total Base Pair Counts
Total TP	5126
Total TN	6519476
Total FP	998
Total FP CONTRA	134
Total FP INCONS	594
Total FP COMP	270
Total FN	5552

Total Scores
MCC	0.648
Average MCC ± 95% Confidence Intervals	0.641 ± 0.026
Sensitivity	0.480
Positive Predictive Value	0.876
Nr of predictions	110

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2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.56	0.38	0.83	24	51011	5	0	5	0	40
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	62	62414	6	1	4	1	48
ASE_00122	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	54	43311	0	0	0	0	34
ASE_00185	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.95	52	73481	4	1	2	1	76
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.23	0.91	21	45428	3	0	2	1	69
ASE_00196	RNaseP_arch links to Rfam database...	0.65	0.47	0.90	35	31587	4	0	4	0	40
ASE_00221	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	71	64544	6	1	4	1	46
ASE_00227	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.92	24	78977	2	0	2	0	109
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.92	59	46907	6	2	3	1	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	60	42419	7	1	6	0	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	60	47830	5	1	4	0	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.90	54	75406	8	1	5	2	75
ASE_00238	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	42	64214	5	0	5	0	72
ASE_00248	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	81	62395	6	0	5	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.70	0.50	1.00	65	78938	0	0	0	0	66
ASE_00254	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.95	61	36792	4	2	1	1	21
ASE_00255	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.94	74	74612	5	0	5	0	56
ASE_00257	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.99	66	50973	2	0	1	1	31
ASE_00267	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	45077	17	2	13	2	30
ASE_00270	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	35	72355	0	0	0	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	48	55559	5	0	4	1	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.74	51	48136	21	3	15	3	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	59	53235	8	3	4	1	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	54	68945	8	3	4	1	68
ASE_00287	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.91	50	54891	6	0	5	1	53
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	103	114372	8	1	5	2	68
ASE_00295	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.91	71	73842	8	1	6	1	60
ASE_00298	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	44	67484	1	0	0	1	69
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.35	0.87	41	80153	12	0	6	6	77
ASE_00335	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	76	75388	8	0	2	6	40
ASE_00339	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	76	80122	8	0	2	6	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	41	46007	11	6	2	3	44
ASE_00343	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.88	69	83358	16	0	9	7	44
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	60	43002	11	1	8	2	26
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	56	41843	7	1	5	1	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	54	51943	6	3	3	0	46
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	60323	0	0	0	0	55
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	54	56888	15	0	11	4	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.92	66	57558	7	0	6	1	41
ASE_00386	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	54	50341	9	1	7	1	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	53	47834	9	1	7	1	40
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.98	42	58268	3	0	1	2	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	44	44505	2	0	2	0	37
ASE_00416	RNaseP_bact_a links to Rfam database...	0.58	0.36	0.92	46	77371	5	1	3	1	81
ASE_00417	RNaseP_arch links to Rfam database...	0.51	0.43	0.61	43	54545	28	1	26	1	57
ASE_00422	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.95	52	46916	4	0	3	1	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.60	0.39	0.91	49	76582	6	1	4	1	76
ASE_00429	-	0.68	0.56	0.82	37	28158	12	1	7	4	29
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	59	46911	3	0	1	2	38
ASE_00434	RNaseP_bact_b links to Rfam database...	0.50	0.26	0.94	29	68234	2	0	2	0	81
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.66	63	79305	35	1	32	2	72
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	90	70768	20	1	17	2	35
CRW_00654	-	0.76	0.60	0.95	75	78131	6	1	3	2	49
CRW_00658	-	0.64	0.44	0.94	45	74643	3	0	3	0	57
CRW_00663	-	0.24	0.18	0.32	11	26072	23	1	22	0	50
CRW_00664	-	0.28	0.22	0.35	17	53580	34	2	29	3	61
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.48	0.92	56	62774	5	1	4	0	61
CRW_00672	Intron_gpI links to Rfam database...	0.69	0.50	0.96	55	72333	3	0	2	1	56
CRW_00674	Intron_gpI links to Rfam database...	0.76	0.57	1.00	71	83365	1	0	0	1	53
CRW_00676	Intron_gpI links to Rfam database...	0.73	0.55	0.98	63	93464	3	0	1	2	52
CRW_00688	-	0.84	0.81	0.87	46	21892	8	2	5	1	11
CRW_00721	-	0.54	0.29	1.00	20	58633	0	0	0	0	48
PDB_00078	-	0.68	0.56	0.83	64	49693	13	4	9	0	51
PDB_00278	-	0.43	0.21	0.88	15	24959	2	0	2	0	57
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00701	-	0.34	0.15	0.80	16	45431	5	0	4	1	93
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00851	-	0.44	0.39	0.52	16	4722	15	0	15	0	25
PDB_00917	-	0.54	0.31	0.97	29	35215	5	0	1	4	66
PDB_01009	tRNA links to Rfam database...	0.95	0.90	1.00	19	2466	2	0	0	2	2
RFA_00770	Corona_pk3 links to Rfam database...	0.58	0.39	0.88	7	2008	1	0	1	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
TMR_00036	tmRNA links to Rfam database...	0.66	0.44	1.00	44	90481	5	0	0	5	57
TMR_00123	tmRNA links to Rfam database...	0.69	0.55	0.86	56	66365	14	0	9	5	45
TMR_00180	tmRNA links to Rfam database...	0.79	0.71	0.89	70	67082	21	3	6	12	29
TMR_00240	tmRNA links to Rfam database...	0.60	0.40	0.89	34	63152	7	1	3	3	51
TMR_00352	tmRNA links to Rfam database...	0.42	0.29	0.61	22	95230	36	3	11	22	53
TMR_00353	tmRNA links to Rfam database...	0.50	0.25	1.00	26	84229	0	0	0	0	79
TMR_00357	tmRNA links to Rfam database...	0.44	0.23	0.84	21	83003	4	0	4	0	71
TMR_00361	-	0.37	0.35	0.40	25	93465	45	16	22	7	47
TMR_00374	tmRNA links to Rfam database...	0.48	0.26	0.89	24	81783	3	1	2	0	68
TMR_00384	tmRNA links to Rfam database...	0.76	0.61	0.96	66	65634	8	0	3	5	42
TMR_00395	tmRNA links to Rfam database...	0.76	0.63	0.92	69	64545	10	2	4	4	40
TMR_00398	tmRNA links to Rfam database...	0.79	0.67	0.93	71	65265	9	1	4	4	35
TMR_00399	tmRNA links to Rfam database...	0.45	0.31	0.66	29	64936	25	7	8	10	65
TMR_00430	tmRNA links to Rfam database...	0.42	0.25	0.73	27	82584	12	0	10	2	82
TMR_00431	tmRNA links to Rfam database...	0.56	0.31	1.00	17	51986	0	0	0	0	38
TMR_00443	tmRNA links to Rfam database...	0.69	0.55	0.86	57	67095	13	1	8	4	47
TMR_00457	tmRNA links to Rfam database...	0.69	0.58	0.82	59	78534	17	3	10	4	43
TMR_00469	tmRNA links to Rfam database...	0.79	0.70	0.90	70	64542	11	4	4	3	30
TMR_00502	tmRNA links to Rfam database...	0.49	0.37	0.65	34	75414	26	6	12	8	59
TMR_00503	tmRNA links to Rfam database...	0.49	0.24	1.00	27	67869	7	0	0	7	84
TMR_00519	tmRNA links to Rfam database...	0.61	0.46	0.80	44	63135	20	2	9	9	51
TMR_00528	tmRNA links to Rfam database...	0.60	0.46	0.78	45	63132	22	4	9	9	52
TMR_00541	tmRNA links to Rfam database...	0.52	0.27	1.00	28	61748	5	0	0	5	77
TMR_00547	tmRNA links to Rfam database...	0.68	0.52	0.90	52	65283	8	0	6	2	48
TMR_00562	tmRNA links to Rfam database...	0.68	0.56	0.83	57	72702	17	6	6	5	45
TMR_00566	tmRNA links to Rfam database...	0.69	0.54	0.89	54	60665	14	1	6	7	46
TMR_00571	tmRNA links to Rfam database...	0.66	0.49	0.89	49	60671	14	1	5	8	50
TMR_00584	tmRNA links to Rfam database...	0.72	0.57	0.92	55	61015	13	1	4	8	42
TMR_00594	tmRNA links to Rfam database...	0.61	0.47	0.79	49	79339	16	2	11	3	55
TMR_00605	tmRNA links to Rfam database...	0.64	0.50	0.83	54	74240	15	2	9	4	54
TMR_00609	tmRNA links to Rfam database...	0.76	0.65	0.89	74	63463	9	1	8	0	39
TMR_00624	tmRNA links to Rfam database...	0.42	0.18	1.00	19	62462	1	0	0	1	89
TMR_00683	tmRNA links to Rfam database...	0.41	0.18	0.95	18	83009	5	1	0	4	82
TMR_00698	tmRNA links to Rfam database...	0.46	0.28	0.76	29	63152	9	1	8	0	75
TMR_00703	tmRNA links to Rfam database...	0.78	0.66	0.92	65	67457	11	1	5	5	34
TMR_00706	tmRNA links to Rfam database...	0.46	0.21	1.00	22	66408	0	0	0	0	81
TMR_00711	tmRNA links to Rfam database...	0.53	0.35	0.81	34	67854	9	6	2	1	64

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Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

Total Base Pair Counts
Total TP	2233
Total TN	6510595
Total FP	12959
Total FP CONTRA	2314
Total FP INCONS	10188
Total FP COMP	457
Total FN	8445

Total Scores
MCC	0.176
Average MCC ± 95% Confidence Intervals	0.185 ± 0.028
Sensitivity	0.209
Positive Predictive Value	0.152
Nr of predictions	110

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2. Individual counts for NanoFolder [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.02	0.03	0.02	2	50914	131	38	86	7	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.22	0.25	0.20	27	62347	108	12	95	1	83
ASE_00122	RNaseP_bact_a links to Rfam database...	0.27	0.30	0.24	26	43258	84	13	68	3	62
ASE_00185	RNaseP_bact_a links to Rfam database...	0.17	0.19	0.16	24	73382	134	14	116	4	104
ASE_00190	RNaseP_bact_b links to Rfam database...	0.24	0.28	0.21	25	45334	93	14	78	1	65
ASE_00196	RNaseP_arch links to Rfam database...	0.49	0.57	0.42	43	31524	62	16	43	3	32
ASE_00221	RNaseP_bact_a links to Rfam database...	0.20	0.21	0.18	25	64484	112	10	101	1	92
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	41	78840	122	20	102	0	92
ASE_00228	RNaseP_bact_a links to Rfam database...	0.05	0.06	0.04	5	46858	109	17	91	1	81
ASE_00229	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	12	42380	97	12	82	3	75
ASE_00231	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	40	47773	84	17	65	2	56
ASE_00234	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	35	75315	117	10	106	1	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.26	0.30	0.23	34	64111	119	18	98	3	80
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.15	0.12	17	62340	124	9	115	0	97
ASE_00250	RNaseP_bact_a links to Rfam database...	0.25	0.29	0.23	38	78835	135	17	113	5	93
ASE_00254	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.14	13	36761	88	3	79	6	69
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.12	0.10	16	74530	146	16	129	1	114
ASE_00257	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	41	50917	85	15	67	3	56
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45036	115	9	105	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.17	27	72232	132	14	117	1	101
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55487	126	12	112	2	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.10	0.12	0.08	11	48071	123	23	100	0	80
ASE_00279	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	16	53177	109	16	92	1	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.31	44	68866	98	14	82	2	78
ASE_00287	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	17	54824	107	14	91	2	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.12	0.13	0.12	23	114287	172	11	160	1	148
ASE_00295	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	21	73761	140	19	119	2	110
ASE_00298	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.08	11	67389	129	8	120	1	102
ASE_00318	RNaseP_bact_b links to Rfam database...	0.03	0.04	0.03	5	80039	156	21	135	0	113
ASE_00335	RNaseP_bact_b links to Rfam database...	0.10	0.12	0.09	14	75304	151	22	126	3	102
ASE_00339	RNaseP_bact_a links to Rfam database...	0.25	0.29	0.22	34	80042	129	20	104	5	85
ASE_00340	RNaseP_bact_a links to Rfam database...	0.06	0.07	0.05	6	45943	110	13	94	3	79
ASE_00343	RNaseP_bact_a links to Rfam database...	0.14	0.17	0.12	19	83275	145	31	111	3	94
ASE_00367	RNaseP_bact_a links to Rfam database...	0.08	0.09	0.07	8	42960	110	10	93	7	78
ASE_00370	RNaseP_bact_a links to Rfam database...	0.03	0.04	0.03	3	41796	109	18	88	3	81
ASE_00372	RNaseP_bact_a links to Rfam database...	0.17	0.20	0.15	20	51871	113	19	93	1	80
ASE_00375	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	15	60246	120	10	107	3	95
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56822	136	9	122	5	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	29	57505	98	10	86	2	78
ASE_00386	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	15	50284	106	9	95	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.31	0.35	0.27	33	47773	90	18	71	1	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	18	58183	111	14	96	1	87
ASE_00413	RNaseP_bact_a links to Rfam database...	0.08	0.10	0.07	8	44438	108	19	86	3	73
ASE_00416	RNaseP_bact_a links to Rfam database...	0.39	0.43	0.35	54	77267	103	18	82	3	73
ASE_00417	RNaseP_arch links to Rfam database...	0.32	0.36	0.28	36	54486	98	18	75	5	64
ASE_00422	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	29	46856	87	9	77	1	65
ASE_00428	RNaseP_bact_a links to Rfam database...	0.24	0.26	0.22	33	76483	121	13	107	1	92
ASE_00429	-	0.08	0.09	0.07	6	28114	84	14	69	1	60
ASE_00430	RNaseP_bact_a links to Rfam database...	0.16	0.18	0.14	17	46852	102	10	92	0	80
ASE_00434	RNaseP_bact_b links to Rfam database...	0.29	0.34	0.25	37	68116	122	20	92	10	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79238	164	12	151	1	135
ASE_00451	RNaseP_bact_a links to Rfam database...	0.20	0.22	0.19	27	70731	118	8	110	0	98
CRW_00654	-	0.41	0.47	0.36	58	78049	105	18	85	2	66
CRW_00658	-	0.21	0.26	0.16	27	74527	137	28	109	0	75
CRW_00663	-	0.08	0.10	0.07	6	26014	90	17	69	4	55
CRW_00664	-	0.14	0.19	0.11	15	53486	134	42	85	7	63
CRW_00671	Intron_gpI links to Rfam database...	0.18	0.21	0.16	24	62682	130	23	106	1	93
CRW_00672	Intron_gpI links to Rfam database...	0.36	0.43	0.31	48	72233	114	35	74	5	63
CRW_00674	Intron_gpI links to Rfam database...	0.16	0.19	0.14	23	83274	142	19	120	3	101
CRW_00676	Intron_gpI links to Rfam database...	0.11	0.14	0.09	16	93347	169	29	136	4	99
CRW_00688	-	0.33	0.40	0.27	23	21859	64	21	42	1	34
CRW_00721	-	0.22	0.31	0.15	21	58515	133	46	71	16	47
PDB_00078	-	0.00	0.00	0.00	0	49644	126	10	116	0	115
PDB_00278	-	0.04	0.06	0.04	4	24875	98	13	84	1	68
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3286	36	6	29	1	25
PDB_00701	-	0.04	0.05	0.04	5	45319	127	14	113	0	104
PDB_00828	Purine links to Rfam database...	0.30	0.33	0.28	9	2453	23	0	23	0	18
PDB_00851	-	0.16	0.17	0.17	7	4711	35	3	32	0	34
PDB_00917	-	0.31	0.34	0.29	32	35136	81	10	67	4	63
PDB_01009	tRNA links to Rfam database...	0.27	0.33	0.23	7	2455	25	3	20	2	14
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1996	24	0	20	4	18
RFA_00773	Corona_pk3 links to Rfam database...	0.93	1.00	0.86	18	1932	9	3	0	6	0
RFA_00808	RydC links to Rfam database...	0.83	1.00	0.70	16	1993	7	7	0	0	0
TMR_00036	tmRNA links to Rfam database...	0.22	0.29	0.17	29	90359	153	37	100	16	72
TMR_00123	tmRNA links to Rfam database...	0.19	0.23	0.16	23	66283	126	20	104	2	78
TMR_00180	tmRNA links to Rfam database...	0.12	0.16	0.10	16	66999	149	35	111	3	83
TMR_00240	tmRNA links to Rfam database...	0.23	0.31	0.17	26	63041	128	39	84	5	59
TMR_00352	tmRNA links to Rfam database...	0.07	0.09	0.05	7	95133	171	39	87	45	68
TMR_00353	tmRNA links to Rfam database...	0.41	0.51	0.32	54	84087	127	49	65	13	51
TMR_00357	tmRNA links to Rfam database...	0.26	0.34	0.19	31	82869	146	44	84	18	61
TMR_00361	-	0.06	0.10	0.04	7	93368	174	64	89	21	65
TMR_00374	tmRNA links to Rfam database...	0.09	0.13	0.07	12	81631	174	44	123	7	80
TMR_00384	tmRNA links to Rfam database...	0.17	0.20	0.14	22	65550	133	26	105	2	86
TMR_00395	tmRNA links to Rfam database...	0.27	0.31	0.24	34	64478	115	10	98	7	75
TMR_00398	tmRNA links to Rfam database...	0.05	0.07	0.05	7	65197	139	24	113	2	99
TMR_00399	tmRNA links to Rfam database...	0.20	0.26	0.16	24	64833	130	38	85	7	70
TMR_00430	tmRNA links to Rfam database...	0.18	0.23	0.15	25	82450	148	34	112	2	84
TMR_00431	tmRNA links to Rfam database...	0.24	0.33	0.17	18	51899	127	26	60	41	37
TMR_00443	tmRNA links to Rfam database...	0.17	0.20	0.15	21	67018	126	24	98	4	83
TMR_00457	tmRNA links to Rfam database...	0.19	0.25	0.15	25	78443	141	39	99	3	77
TMR_00469	tmRNA links to Rfam database...	0.10	0.12	0.08	12	64469	145	27	112	6	88
TMR_00502	tmRNA links to Rfam database...	0.14	0.19	0.11	18	75303	150	45	100	5	75
TMR_00503	tmRNA links to Rfam database...	0.11	0.14	0.10	15	67741	141	20	120	1	96
TMR_00519	tmRNA links to Rfam database...	0.04	0.05	0.03	5	63046	141	33	106	2	90
TMR_00528	tmRNA links to Rfam database...	0.13	0.15	0.11	15	63051	131	20	104	7	82
TMR_00541	tmRNA links to Rfam database...	0.12	0.14	0.10	15	61630	139	22	109	8	90
TMR_00547	tmRNA links to Rfam database...	0.28	0.35	0.23	35	65188	122	37	81	4	65
TMR_00562	tmRNA links to Rfam database...	0.09	0.12	0.08	12	72617	147	27	115	5	90
TMR_00566	tmRNA links to Rfam database...	0.13	0.16	0.11	16	60582	132	22	106	4	84
TMR_00571	tmRNA links to Rfam database...	0.05	0.06	0.04	6	60577	149	19	124	6	93
TMR_00584	tmRNA links to Rfam database...	0.01	0.01	0.01	1	60922	159	33	119	7	96
TMR_00594	tmRNA links to Rfam database...	0.08	0.10	0.06	10	79238	156	30	123	3	94
TMR_00605	tmRNA links to Rfam database...	0.28	0.35	0.23	38	74141	129	36	90	3	70
TMR_00609	tmRNA links to Rfam database...	0.53	0.62	0.45	70	63391	89	28	57	4	43
TMR_00624	tmRNA links to Rfam database...	0.36	0.44	0.30	47	62325	111	27	82	2	61
TMR_00683	tmRNA links to Rfam database...	0.01	0.02	0.01	2	82854	176	50	122	4	98
TMR_00698	tmRNA links to Rfam database...	0.20	0.24	0.17	25	63042	124	27	96	1	79
TMR_00703	tmRNA links to Rfam database...	0.10	0.12	0.08	12	67376	140	26	114	0	87
TMR_00706	tmRNA links to Rfam database...	0.14	0.17	0.11	17	66281	133	29	103	1	86
TMR_00711	tmRNA links to Rfam database...	0.18	0.22	0.14	22	67740	137	41	93	3	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

2. Individual counts for NanoFolder [ download as .csv ]