CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	MXScarna(seed)		RSpredict(seed)
MCC	0.627	>	0.364
Average MCC ± 95% Confidence Intervals	0.591 ± 0.020	>	0.136 ± 0.024
Sensitivity	0.531	>	0.222
Positive Predictive Value	0.741	>	0.596
Total TP	29930	>	12528
Total TN	88679684	<	88699044
Total FP	13946	>	10114
Total FP CONTRA	1499	>	1293
Total FP INCONS	8949	>	7197
Total FP COMP	3498	>	1624
Total FN	26467	<	43869
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of MXScarna(seed) and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(seed) and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(seed) and RSpredict(seed)).

^top

Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

Total Base Pair Counts
Total TP	29930
Total TN	88679684
Total FP	13946
Total FP CONTRA	1499
Total FP INCONS	8949
Total FP COMP	3498
Total FN	26467

Total Scores
MCC	0.627
Average MCC ± 95% Confidence Intervals	0.591 ± 0.020
Sensitivity	0.531
Positive Predictive Value	0.741
Nr of predictions	353

^top

2. Individual counts for MXScarna(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.67	0.51	0.88	38	34148	6	0	5	1	37
ASE_00002	RNaseP_arch links to Rfam database...	0.68	0.53	0.87	39	35466	7	1	5	1	34
ASE_00004	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.65	40	47833	24	4	18	2	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	67	57897	8	2	4	2	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.51	0.41	0.63	38	47526	25	3	19	3	55
ASE_00007	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	83	59593	12	4	5	3	27
ASE_00009	RNaseP_arch links to Rfam database...	0.68	0.57	0.81	38	26059	10	1	8	1	29
ASE_00012	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	68	73829	26	4	19	3	55
ASE_00014	RNaseP_arch links to Rfam database...	0.67	0.52	0.87	55	54222	9	0	8	1	51
ASE_00017	RNaseP_nuc links to Rfam database...	0.49	0.41	0.59	26	50996	36	2	16	18	38
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.91	86	80507	11	2	6	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.71	45	73857	21	6	12	3	81
ASE_00021	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.66	57	104110	34	4	25	5	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.66	0.58	0.75	72	82932	31	5	19	7	52
ASE_00023	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	25	84188	47	2	40	5	102
ASE_00025	RNaseP_nuc links to Rfam database...	0.53	0.42	0.67	30	78561	28	0	15	13	41
ASE_00026	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	72	59600	18	5	8	5	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.60	0.78	76	84569	29	5	16	8	50
ASE_00029	RNaseP_bact_a links to Rfam database...	0.24	0.18	0.32	22	82960	50	6	40	4	100
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.46	0.91	67	85417	9	3	4	2	78
ASE_00031	RNaseP_bact_a links to Rfam database...	0.31	0.23	0.43	29	86668	41	3	36	2	97
ASE_00032	RNaseP_bact_a links to Rfam database...	0.20	0.15	0.28	18	80135	55	0	47	8	100
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	81	64889	14	3	7	4	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.86	78	70409	18	3	10	5	40
ASE_00036	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.73	66	75764	28	3	22	3	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.94	87	59247	9	2	4	3	23
ASE_00038	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	57	53560	14	1	10	3	44
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	78	78906	22	4	15	3	55
ASE_00041	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	78	57543	12	2	7	3	30
ASE_00042	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.87	76	90013	14	1	10	3	69
ASE_00044	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	82	54527	9	3	3	3	23
ASE_00046	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	68	50325	13	1	9	3	35
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.92	78	74220	8	2	5	1	52
ASE_00052	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	62	61342	24	3	18	3	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	63	79318	24	4	16	4	70
ASE_00057	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	77	82127	14	4	7	3	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	63	45384	7	1	3	3	26
ASE_00066	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	74	72306	11	3	7	1	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.88	44	37625	8	1	5	2	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	69	82941	22	3	15	4	71
ASE_00074	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	83	67808	9	2	3	4	36
ASE_00075	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	56	108730	31	3	22	6	106
ASE_00076	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.55	38	68196	33	2	29	2	80
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	60	45079	14	4	7	3	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	60	43002	13	2	7	4	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.41	0.33	0.52	33	55548	32	1	29	2	67
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.30	0.47	37	71552	44	6	36	2	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	65	49695	13	2	8	3	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.50	28	70444	31	1	27	3	88
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.89	62	62411	11	1	7	3	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.71	0.59	0.85	58	53560	14	1	9	4	41
ASE_00087	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	30	88345	36	0	35	1	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	55	55543	16	2	11	3	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.73	49	63479	21	2	16	3	64
ASE_00096	RNaseP_bact_a links to Rfam database...	0.41	0.30	0.55	35	63482	31	1	28	2	80
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.96	87	64529	7	2	2	3	33
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.41	0.70	31	82171	27	1	12	14	45
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.63	57	117765	36	5	28	3	109
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.93	87	64167	10	2	5	3	32
ASE_00105	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.70	42	64201	21	5	13	3	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.91	86	73058	12	2	7	3	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.43	0.68	27	46931	25	0	13	12	36
ASE_00111	RNaseP_nuc links to Rfam database...	0.68	0.54	0.86	31	50050	23	0	5	18	26
ASE_00112	RNaseP_bact_a links to Rfam database...	0.32	0.25	0.42	29	75397	42	7	33	2	87
ASE_00115	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	43	54552	23	1	19	3	58
ASE_00116	RNaseP_arch links to Rfam database...	0.35	0.27	0.46	18	31587	22	1	20	1	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.30	0.50	31	60664	34	3	28	3	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.30	0.24	0.38	26	62767	43	2	40	1	82
ASE_00120	RNaseP_arch links to Rfam database...	0.72	0.57	0.92	54	46912	7	0	5	2	40
ASE_00121	RNaseP_arch links to Rfam database...	0.77	0.63	0.94	58	45088	5	0	4	1	34
ASE_00122	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.75	51	43297	20	1	16	3	37
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	45	38450	10	2	6	2	40
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	45	39290	7	1	4	2	43
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	54	53235	15	1	11	3	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	59	62768	11	1	7	3	52
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	40	39292	10	1	7	2	45
ASE_00132	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	38	50336	31	4	25	2	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	59	50334	13	1	9	3	36
ASE_00135	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.51	35	63121	35	4	30	1	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	62	48137	9	1	5	3	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.66	42	48452	25	2	20	3	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	51	40410	13	3	6	4	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	36	54231	19	0	18	1	68
ASE_00140	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	42	70811	26	3	20	3	83
ASE_00142	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	86	67064	14	3	8	3	36
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.40	0.85	44	70073	9	0	8	1	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	82	70787	10	2	5	3	42
ASE_00148	RNaseP_arch links to Rfam database...	0.47	0.28	0.80	43	112521	12	0	11	1	111
ASE_00151	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	70	51923	13	7	3	3	28
ASE_00153	RNaseP_nuc links to Rfam database...	0.60	0.48	0.76	35	57584	26	0	11	15	38
ASE_00154	RNaseP_arch links to Rfam database...	0.61	0.50	0.76	53	65271	18	4	13	1	54
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.35	0.83	50	93468	12	0	10	2	92
ASE_00163	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	65	53228	11	2	6	3	28
ASE_00165	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.74	43	52917	19	1	14	4	58
ASE_00168	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	60683	27	0	12	15	33
ASE_00169	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	36	57236	22	1	18	3	71
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	58	48757	16	2	11	3	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	46	48451	22	1	18	3	48
ASE_00172	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	49	58931	19	4	12	3	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.69	46	61008	24	3	18	3	63
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	59	59966	9	1	5	3	48
ASE_00176	RNaseP_bact_a links to Rfam database...	0.46	0.35	0.60	38	59968	27	1	24	2	72
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	41	44191	24	4	17	3	43
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	61	51288	14	2	9	3	39
ASE_00181	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.76	48	57567	19	3	12	4	58
ASE_00182	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.51	33	84190	33	3	29	1	103
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	56	54550	12	0	9	3	46
ASE_00185	RNaseP_bact_a links to Rfam database...	0.23	0.16	0.32	21	73470	46	8	37	1	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	82	78905	21	2	14	5	50
ASE_00187	RNaseP_arch links to Rfam database...	0.58	0.43	0.78	49	68572	17	1	13	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	58	63107	35	5	20	10	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.42	0.67	38	45394	23	5	14	4	52
ASE_00192	RNaseP_bact_b links to Rfam database...	0.29	0.23	0.38	30	84588	51	6	42	3	103
ASE_00194	RNaseP_bact_b links to Rfam database...	0.60	0.50	0.71	60	73452	32	5	19	8	59
ASE_00196	RNaseP_arch links to Rfam database...	0.66	0.52	0.85	39	31580	9	0	7	2	36
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	80	89156	20	2	15	3	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	62	52583	8	1	4	3	40
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.68	45	46599	24	1	20	3	51
ASE_00204	RNaseP_bact_b links to Rfam database...	0.62	0.53	0.72	59	67814	30	6	17	7	53
ASE_00205	RNaseP_arch links to Rfam database...	0.71	0.59	0.85	53	45994	12	0	9	3	37
ASE_00209	RNaseP_arch links to Rfam database...	0.77	0.65	0.92	57	43009	7	0	5	2	31
ASE_00210	RNaseP_arch links to Rfam database...	0.69	0.54	0.90	35	27222	5	0	4	1	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.82	80	93864	20	2	15	3	68
ASE_00213	RNaseP_arch links to Rfam database...	0.65	0.48	0.86	32	27224	6	0	5	1	34
ASE_00214	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	56205	13	2	8	3	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.26	0.54	26	48468	23	2	20	1	73
ASE_00216	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	48	39281	14	3	8	3	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	64	40401	8	2	3	3	26
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	81	64529	13	2	8	3	36
ASE_00222	RNaseP_arch links to Rfam database...	0.47	0.27	0.82	42	112050	10	0	9	1	115
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.21	0.38	28	78930	47	1	44	2	105
ASE_00228	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.76	44	46913	18	2	12	4	42
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	54	42422	13	1	9	3	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	38	47832	27	5	20	2	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.71	48	38435	23	4	16	3	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.23	0.17	0.32	22	75398	48	3	43	2	107
ASE_00237	RNaseP_nuc links to Rfam database...	0.56	0.48	0.66	27	45712	30	2	12	16	29
ASE_00238	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.76	44	64203	17	3	11	3	70
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.74	46	46603	19	1	15	3	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	63	43885	11	2	6	3	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	84	60982	12	2	7	3	28
ASE_00246	RNaseP_nuc links to Rfam database...	0.60	0.48	0.74	32	48162	25	0	11	14	35
ASE_00247	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	54242	28	0	12	16	33
ASE_00248	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	82	62392	11	2	5	4	32
ASE_00250	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.73	64	78915	25	4	20	1	67
ASE_00252	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.64	58	115350	37	4	28	5	110
ASE_00254	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	48	36794	17	1	13	3	34
ASE_00255	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	65	74603	26	5	18	3	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	56	50978	9	4	2	3	41
ASE_00259	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.73	58	73073	28	1	21	6	63
ASE_00263	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	47	70431	25	3	19	3	73
ASE_00264	RNaseP_nuc links to Rfam database...	0.28	0.14	0.56	14	49116	15	0	11	4	86
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	45084	12	2	7	3	31
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	35	72328	32	0	27	5	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.77	49	55547	18	1	14	3	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.75	44	48146	19	1	14	4	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	66	53230	8	2	3	3	35
ASE_00280	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	61	51931	14	1	10	3	37
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44485	9	2	4	3	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.65	45	77746	26	3	21	2	82
ASE_00283	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.82	60	61703	16	2	11	3	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	58	58242	14	2	9	3	50
ASE_00285	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	49	68930	30	2	25	3	73
ASE_00286	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.82	53	46600	15	1	11	3	39
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	56	54879	14	2	9	3	47
ASE_00288	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.77	50	45991	18	2	13	3	43
ASE_00289	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.70	66	100931	31	3	25	3	91
ASE_00292	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	90	81712	11	3	5	3	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.87	88	114380	16	2	11	3	83
ASE_00295	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	82	73831	10	2	5	3	49
ASE_00296	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.87	78	91716	15	3	9	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.50	0.77	49	52911	18	0	15	3	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	47	67463	21	4	14	3	66
ASE_00299	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.42	24	49398	34	1	32	1	76
ASE_00313	RNaseP_nuc links to Rfam database...	0.39	0.20	0.75	18	62457	17	0	6	11	71
ASE_00316	RNaseP_nuc links to Rfam database...	0.27	0.17	0.41	17	107839	35	3	21	11	81
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.74	64	80113	37	6	17	14	54
ASE_00327	RNaseP_nuc links to Rfam database...	0.28	0.18	0.43	16	57254	24	1	20	3	73
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	74	72679	31	5	13	13	38
ASE_00330	RNaseP_nuc links to Rfam database...	0.28	0.17	0.47	15	56248	24	0	17	7	75
ASE_00332	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	87	81711	15	2	10	3	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.72	0.66	0.78	76	75369	33	6	15	12	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.35	0.24	0.50	17	39306	24	2	15	7	54
ASE_00338	RNaseP_nuc links to Rfam database...	0.31	0.19	0.50	19	66392	21	2	17	2	79
ASE_00339	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	40	80131	37	3	26	8	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.59	38	45992	31	3	23	5	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	83	62390	11	3	5	3	32
ASE_00343	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.35	23	83371	49	4	38	7	90
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	18	2	14	2	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	60	57900	13	1	9	3	47
ASE_00359	RNaseP_arch links to Rfam database...	0.37	0.26	0.51	21	42737	24	1	19	4	59
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.63	0.98	41	29361	2	0	1	1	24
ASE_00361	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	59	75403	7	1	3	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	60	48137	12	2	6	4	31
ASE_00363	RNaseP_bact_a links to Rfam database...	0.77	0.63	0.94	59	51297	7	1	3	3	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	60	54216	12	1	8	3	45
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	47	58586	23	6	14	3	51
ASE_00367	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	61	43002	11	2	6	3	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.86	62	55873	13	1	9	3	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	60	41840	8	1	4	3	24
ASE_00372	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.71	45	51940	21	2	16	3	55
ASE_00374	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44784	9	2	4	3	28
ASE_00375	RNaseP_bact_a links to Rfam database...	0.50	0.39	0.64	43	60311	26	1	23	2	67
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	58	56877	21	2	16	3	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	62	57560	11	1	7	3	45
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	59	45988	12	2	7	3	30
ASE_00380	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.65	40	54884	24	1	21	2	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	60	41837	11	2	6	3	24
ASE_00383	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	70	54538	10	2	5	3	35
ASE_00384	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	56	48450	13	1	9	3	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	38	41846	24	3	18	3	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	59	50339	8	1	4	3	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.71	52	55872	25	2	19	4	52
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	57	45686	14	2	8	4	32
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	58	42130	10	2	5	3	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	53	47830	15	1	11	3	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	58	46904	12	1	8	3	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	41552	7	1	3	3	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	55	41551	12	2	8	2	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	64	54544	10	2	5	3	41
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.82	54	55879	15	0	12	3	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.56	39	57900	33	2	29	2	67
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	51	76961	19	0	16	3	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	63	42419	7	1	3	3	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	61	55877	10	1	6	3	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	57	43008	10	2	4	4	28
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.93	64	48759	8	2	3	3	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.72	43	49395	20	2	15	3	46
ASE_00412	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	44	58250	20	1	16	3	61
ASE_00413	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	46	44495	14	1	9	4	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.19	0.16	0.24	15	46298	48	3	44	1	80
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.31	0.48	32	54880	36	3	31	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	77326	23	3	16	4	51
ASE_00417	RNaseP_arch links to Rfam database...	0.78	0.63	0.95	63	54549	5	0	3	2	37
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.55	0.91	41	38736	6	0	4	2	34
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	50	54877	20	3	16	1	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	46	46904	24	3	18	3	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	79	56865	13	3	6	4	30
ASE_00426	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	39	60994	42	3	39	0	69
ASE_00428	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	75	76542	22	5	14	3	50
ASE_00430	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	44	46906	24	1	20	3	53
ASE_00431	RNaseP_bact_a links to Rfam database...	0.27	0.22	0.34	21	46299	40	8	32	0	74
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.55	0.71	60	68180	34	5	20	9	50
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	2	28	3	68
ASE_00438	RNaseP_bact_a links to Rfam database...	0.41	0.32	0.54	37	65997	33	6	26	1	79
ASE_00441	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.43	27	64198	40	4	32	4	85
ASE_00447	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	83	60286	12	2	7	3	33
ASE_00448	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	81	64169	14	2	9	3	31
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.88	83	70782	14	2	9	3	42
CRW_00013	Intron_gpI links to Rfam database...	0.33	0.21	0.53	24	103695	23	4	17	2	91
CRW_00016	Intron_gpI links to Rfam database...	0.31	0.19	0.51	23	77376	24	7	15	2	97
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.83	0.81	0.86	369	1085172	112	11	49	52	89
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.74	0.68	0.82	318	1170827	101	10	60	31	152
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	302	1107443	101	13	58	30	154
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	305	1172369	105	12	60	33	168
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	312	1181569	104	11	61	32	164
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	305	1108933	99	12	55	32	152
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.81	301	1178507	110	5	67	38	164
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	304	1135902	106	11	61	34	159
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.82	312	1201645	103	12	56	35	164
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	300	1152549	106	11	61	34	166
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.74	0.68	0.82	319	1180025	107	12	60	35	152
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.73	0.65	0.82	305	1190824	106	6	61	39	163
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	264	1082289	130	14	89	27	181
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.68	0.61	0.77	287	1178505	117	12	76	29	186
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.76	0.69	0.83	327	1207841	102	11	56	35	148
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.83	321	1198539	99	12	54	33	157
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	299	1105958	104	12	59	33	154
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	311	1218757	105	11	62	32	173
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.78	307	1198533	120	11	75	34	171
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	311	1192362	98	11	56	31	157
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	304	1111915	100	11	56	33	151
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.80	295	1122381	105	12	63	30	167
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	290	1085237	110	10	64	36	156
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	306	1114897	103	10	58	35	151
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.80	300	1110421	108	12	62	34	153
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.79	284	1117899	114	10	67	37	169
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.82	305	1144968	102	10	58	34	159
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.71	242	1015684	127	13	86	28	190
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	287	1189280	118	12	74	32	189
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.71	245	1123906	126	12	87	27	216
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.46	181	1445456	267	46	167	54	281
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.48	0.45	0.51	215	1579331	275	41	166	68	267
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.50	0.47	0.53	232	1611469	276	42	167	67	264
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.36	0.32	0.41	170	2126540	318	50	193	75	364
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.49	0.47	0.52	231	1615062	273	41	169	63	265
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.46	0.43	0.49	213	1665792	286	43	177	66	282
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	304	1116392	101	11	58	32	154
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.79	279	1094105	117	6	70	41	166
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.73	0.65	0.82	294	1119399	104	6	57	41	158
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	294	1098545	110	6	58	46	152
CRW_00610	Intron_gpI links to Rfam database...	0.16	0.09	0.32	7	36293	15	1	14	0	74
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34956	24	7	17	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121749	22	4	18	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.10	0.32	6	56261	13	1	12	0	55
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165006	19	2	17	0	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150963	16	0	12	4	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153149	34	7	25	2	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129785	17	1	9	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.27	0.74	29	63507	14	0	10	4	77
CRW_00634	Intron_gpI links to Rfam database...	0.47	0.30	0.74	28	64582	18	0	10	8	66
CRW_00670	Intron_gpI links to Rfam database...	0.47	0.26	0.86	31	70089	7	0	5	2	89
CRW_00671	Intron_gpI links to Rfam database...	0.56	0.37	0.84	43	62784	10	0	8	2	74
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.28	0.67	31	72344	17	0	15	2	80
CRW_00674	Intron_gpI links to Rfam database...	0.22	0.14	0.37	17	83390	29	5	24	0	107
CRW_00676	Intron_gpI links to Rfam database...	0.03	0.02	0.07	2	93500	31	4	22	5	113
CRW_00692	Intron_gpI links to Rfam database...	0.03	0.01	0.06	1	68619	22	0	15	7	89
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.45	0.42	0.48	201	1636722	295	39	183	73	280
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.68	0.59	0.78	262	1215683	119	6	69	44	184
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.73	212	1201733	150	4	76	70	172
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.71	0.63	0.80	280	1137437	111	7	62	42	167
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	216	1152623	164	8	74	82	178
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	279	1117895	114	13	73	28	191
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	301	1135902	107	11	64	32	163
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.47	0.44	0.50	221	1606085	276	37	185	54	282
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	231	1593565	264	35	174	55	275
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.73	0.68	0.78	294	977526	128	10	71	47	140
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.59	0.36	1.00	5	941	0	0	0	0	9
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.66	0.56	0.77	278	1073486	114	9	72	33	217
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2681	21	1	19	1	23
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27011	17	1	16	0	81
PDB_00828	Purine links to Rfam database...	0.82	0.67	1.00	18	2467	0	0	0	0	9
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.63	0.52	0.77	280	1500414	135	2	82	51	255
PDB_00919	RNaseP_bact_a links to Rfam database...	0.27	0.21	0.35	22	44191	40	3	37	0	81
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01073	SAM links to Rfam database...	0.81	0.74	0.89	25	4343	4	1	2	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.61	0.49	0.76	269	1471116	131	6	79	46	278
PDB_01092	glmS links to Rfam database...	0.70	0.63	0.79	33	10111	12	2	7	3	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.47	0.69	263	1606145	154	8	112	34	299
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.66	0.55	0.80	299	1433595	117	1	76	40	241
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.66	0.56	0.79	296	1204752	112	8	72	32	231
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.69	0.59	0.80	290	1117898	113	9	63	41	201
RFA_00597	Telomerase-vert links to Rfam database...	0.71	0.66	0.76	72	97808	43	8	15	20	37
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.68	0.77	69	84576	40	5	16	19	32
RFA_00599	Telomerase-vert links to Rfam database...	0.54	0.51	0.57	57	101375	62	5	38	19	54
RFA_00600	Telomerase-vert links to Rfam database...	0.53	0.49	0.57	49	120209	62	10	27	25	51
RFA_00601	Telomerase-vert links to Rfam database...	0.74	0.73	0.75	83	99124	49	4	24	21	31
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.68	0.69	79	101361	50	5	30	15	37
RFA_00632	HDV_ribozyme links to Rfam database...	0.25	0.25	0.27	7	4069	19	1	18	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.35	0.36	0.36	10	3977	18	2	16	0	18
RFA_00767	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1999	7	2	5	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1936	7	2	5	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	19	2	14	3	16
RFA_00809	RydC links to Rfam database...	0.30	0.31	0.29	5	2128	12	1	11	0	11
TMR_00173	tmRNA links to Rfam database...	0.41	0.31	0.54	13	42171	18	2	9	7	29
TMR_00357	tmRNA links to Rfam database...	0.19	0.13	0.28	12	82985	38	4	27	7	80
TMR_00601	tmRNA links to Rfam database...	0.67	0.62	0.72	26	58960	30	1	9	20	16
TMR_00696	tmRNA links to Rfam database...	0.35	0.25	0.51	28	85023	34	3	24	7	86

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	12528
Total TN	88699044
Total FP	10114
Total FP CONTRA	1293
Total FP INCONS	7197
Total FP COMP	1624
Total FN	43869

Total Scores
MCC	0.364
Average MCC ± 95% Confidence Intervals	0.136 ± 0.024
Sensitivity	0.222
Positive Predictive Value	0.596
Nr of predictions	353

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.13	0.04	0.35	6	80584	11	0	11	0	128
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83008	21	3	17	1	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78605	1	0	1	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	59677	6	1	5	0	108
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86724	12	2	10	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70496	6	0	4	2	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	61418	2	0	2	0	107
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00057	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.17	2	82203	11	0	10	1	132
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83022	6	1	5	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.20	0.07	0.62	8	64607	5	0	5	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82213	2	1	1	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117845	10	0	10	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64254	7	0	7	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.13	0.03	0.50	4	73145	4	0	4	0	123
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46969	2	2	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00142	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.25	2	67153	6	0	6	0	120
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	54605	7	0	7	0	99
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63180	13	1	9	3	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73523	15	0	13	2	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.06	0.03	0.13	3	67873	20	6	14	0	109
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.12	0.04	0.40	4	61065	6	0	6	0	108
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	62474	4	0	4	0	111
ASE_00250	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.30	3	78993	7	0	7	0	128
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00259	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	3	73147	3	0	3	0	118
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44548	3	0	3	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80184	21	0	16	5	118
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57285	6	1	5	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75451	19	1	14	4	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80192	8	0	8	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57968	2	0	2	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57628	2	0	2	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48823	6	0	5	1	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00412	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	58305	5	1	4	0	104
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.04	0.50	4	56945	4	0	4	0	105
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	346	1085169	116	15	71	30	112
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.74	268	1170853	120	15	79	26	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.66	0.59	0.75	269	1107457	114	15	75	24	187
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1172394	120	18	77	25	216
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	258	1181594	124	19	82	23	218
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	261	1108955	113	16	73	24	196
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.66	0.57	0.75	267	1178524	119	14	75	30	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	273	1135921	112	13	71	28	190
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1201662	126	16	87	23	216
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.74	270	1152558	117	19	74	24	196
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.74	252	1180075	110	15	74	21	219
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	258	1190849	118	11	78	29	210
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.62	0.55	0.71	243	1082316	119	17	80	22	202
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.67	0.58	0.77	274	1178524	103	15	67	21	199
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1207883	117	16	79	22	218
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	257	1198565	127	16	88	23	221
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	248	1105984	121	17	79	25	205
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	278	1218768	123	17	78	28	206
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.74	285	1198543	124	18	80	26	193
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	251	1192392	119	17	80	22	217
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	255	1111941	113	15	75	23	200
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.73	243	1122417	115	15	76	24	219
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	250	1085260	113	15	76	22	196
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.72	249	1114926	120	15	81	24	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.61	0.52	0.72	235	1110468	113	17	75	21	218
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	240	1117918	122	15	87	20	213
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.56	0.74	260	1144991	117	12	78	27	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.68	180	1015761	96	14	70	12	252
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.70	240	1189312	122	16	85	21	236
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.55	0.43	0.72	196	1123976	99	12	66	21	265
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445558	306	53	239	14	462
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1579464	301	50	239	12	482
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1611598	319	50	262	7	496
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126581	414	77	295	42	534
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615206	309	45	252	12	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1665933	312	53	239	20	495
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	252	1116423	114	13	77	24	206
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.74	236	1094141	110	9	74	27	209
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	245	1119432	103	8	71	24	207
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.76	258	1098562	118	11	72	35	188
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56279	1	0	1	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165014	28	5	6	17	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150964	27	4	7	16	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153172	32	5	4	23	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129777	25	6	12	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	1	0	0	1	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1636859	310	50	235	25	480
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.79	217	1215744	86	5	54	27	229
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.59	0.48	0.73	185	1201773	99	7	60	32	199
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	249	1137451	114	13	73	28	198
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.72	184	1152666	117	7	64	46	210
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.73	232	1117943	100	11	74	15	238
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	123	14	87	22	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606225	319	65	238	16	503
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1593701	318	50	254	14	506
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.52	0.41	0.68	177	977639	95	12	73	10	257
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.71	0.57	0.89	8	937	1	0	1	0	6
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.76	261	1073500	115	11	73	31	234
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.60	0.48	0.76	259	1500435	126	9	75	42	276
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01020	Purine links to Rfam database...	0.76	0.65	0.88	15	2261	2	2	0	0	8
PDB_01073	SAM links to Rfam database...	0.39	0.18	0.86	6	4364	1	0	1	0	28
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	259	1471129	122	8	74	40	288
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	266	1606178	119	12	72	35	296
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.76	268	1433617	119	7	79	33	272
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.53	0.78	280	1204768	120	9	71	40	247
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.65	0.55	0.76	272	1117903	116	13	72	31	219
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84655	11	0	11	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120278	17	1	16	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
TMR_00173	tmRNA links to Rfam database...	0.30	0.17	0.54	7	42182	6	2	4	0	35
TMR_00357	tmRNA links to Rfam database...	0.25	0.09	0.73	8	83017	3	0	3	0	84
TMR_00601	tmRNA links to Rfam database...	0.30	0.19	0.47	8	58979	9	2	7	0	34
TMR_00696	tmRNA links to Rfam database...	0.24	0.07	0.80	8	85068	2	0	2	0	106

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

2. Individual counts for MXScarna(seed) [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]