CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(seed)		Sfold
MCC	0.628	>	0.536
Average MCC ± 95% Confidence Intervals	0.593 ± 0.019	>	0.562 ± 0.016
Sensitivity	0.533	>	0.475
Positive Predictive Value	0.741	>	0.606
Total TP	31861	>	28393
Total TN	96911251	>	96907450
Total FP	14955	<	21745
Total FP CONTRA	1596	<	2547
Total FP INCONS	9565	<	15883
Total FP COMP	3794	>	3315
Total FN	27970	<	31438
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(seed) and Sfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(seed) and Sfold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(seed) and Sfold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(seed) and Sfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(seed) and Sfold).

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Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

Total Base Pair Counts
Total TP	31861
Total TN	96911251
Total FP	14955
Total FP CONTRA	1596
Total FP INCONS	9565
Total FP COMP	3794
Total FN	27970

Total Scores
MCC	0.628
Average MCC ± 95% Confidence Intervals	0.593 ± 0.019
Sensitivity	0.533
Positive Predictive Value	0.741
Nr of predictions	363

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2. Individual counts for MXScarna(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.67	0.51	0.88	38	34148	6	0	5	1	37
ASE_00002	RNaseP_arch links to Rfam database...	0.68	0.53	0.87	39	35466	7	1	5	1	34
ASE_00004	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.65	40	47833	24	4	18	2	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	67	57897	8	2	4	2	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.51	0.41	0.63	38	47526	25	3	19	3	55
ASE_00007	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	83	59593	12	4	5	3	27
ASE_00009	RNaseP_arch links to Rfam database...	0.68	0.57	0.81	38	26059	10	1	8	1	29
ASE_00012	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	68	73829	26	4	19	3	55
ASE_00014	RNaseP_arch links to Rfam database...	0.67	0.52	0.87	55	54222	9	0	8	1	51
ASE_00017	RNaseP_nuc links to Rfam database...	0.49	0.41	0.59	26	50996	36	2	16	18	38
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.91	86	80507	11	2	6	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.71	45	73857	21	6	12	3	81
ASE_00021	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.66	57	104110	34	4	25	5	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.66	0.58	0.75	72	82932	31	5	19	7	52
ASE_00023	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	25	84188	47	2	40	5	102
ASE_00025	RNaseP_nuc links to Rfam database...	0.53	0.42	0.67	30	78561	28	0	15	13	41
ASE_00026	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	72	59600	18	5	8	5	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.60	0.78	76	84569	29	5	16	8	50
ASE_00029	RNaseP_bact_a links to Rfam database...	0.24	0.18	0.32	22	82960	50	6	40	4	100
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.46	0.91	67	85417	9	3	4	2	78
ASE_00031	RNaseP_bact_a links to Rfam database...	0.31	0.23	0.43	29	86668	41	3	36	2	97
ASE_00032	RNaseP_bact_a links to Rfam database...	0.20	0.15	0.28	18	80135	55	0	47	8	100
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	81	64889	14	3	7	4	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.86	78	70409	18	3	10	5	40
ASE_00036	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.73	66	75764	28	3	22	3	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.94	87	59247	9	2	4	3	23
ASE_00038	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	57	53560	14	1	10	3	44
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	78	78906	22	4	15	3	55
ASE_00041	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	78	57543	12	2	7	3	30
ASE_00042	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.87	76	90013	14	1	10	3	69
ASE_00044	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	82	54527	9	3	3	3	23
ASE_00046	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	68	50325	13	1	9	3	35
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.92	78	74220	8	2	5	1	52
ASE_00052	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	62	61342	24	3	18	3	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	63	79318	24	4	16	4	70
ASE_00057	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	77	82127	14	4	7	3	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	63	45384	7	1	3	3	26
ASE_00066	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	74	72306	11	3	7	1	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.88	44	37625	8	1	5	2	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	69	82941	22	3	15	4	71
ASE_00074	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	83	67808	9	2	3	4	36
ASE_00075	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	56	108730	31	3	22	6	106
ASE_00076	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.55	38	68196	33	2	29	2	80
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	60	45079	14	4	7	3	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	60	43002	13	2	7	4	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.41	0.33	0.52	33	55548	32	1	29	2	67
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.30	0.47	37	71552	44	6	36	2	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	65	49695	13	2	8	3	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.50	28	70444	31	1	27	3	88
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.89	62	62411	11	1	7	3	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.71	0.59	0.85	58	53560	14	1	9	4	41
ASE_00087	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	30	88345	36	0	35	1	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	55	55543	16	2	11	3	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.73	49	63479	21	2	16	3	64
ASE_00096	RNaseP_bact_a links to Rfam database...	0.41	0.30	0.55	35	63482	31	1	28	2	80
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.96	87	64529	7	2	2	3	33
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.41	0.70	31	82171	27	1	12	14	45
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.63	57	117765	36	5	28	3	109
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.93	87	64167	10	2	5	3	32
ASE_00105	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.70	42	64201	21	5	13	3	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.91	86	73058	12	2	7	3	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.43	0.68	27	46931	25	0	13	12	36
ASE_00111	RNaseP_nuc links to Rfam database...	0.68	0.54	0.86	31	50050	23	0	5	18	26
ASE_00112	RNaseP_bact_a links to Rfam database...	0.32	0.25	0.42	29	75397	42	7	33	2	87
ASE_00115	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	43	54552	23	1	19	3	58
ASE_00116	RNaseP_arch links to Rfam database...	0.35	0.27	0.46	18	31587	22	1	20	1	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.30	0.50	31	60664	34	3	28	3	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.30	0.24	0.38	26	62767	43	2	40	1	82
ASE_00120	RNaseP_arch links to Rfam database...	0.72	0.57	0.92	54	46912	7	0	5	2	40
ASE_00121	RNaseP_arch links to Rfam database...	0.77	0.63	0.94	58	45088	5	0	4	1	34
ASE_00122	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.75	51	43297	20	1	16	3	37
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	45	38450	10	2	6	2	40
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	45	39290	7	1	4	2	43
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	54	53235	15	1	11	3	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	59	62768	11	1	7	3	52
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	40	39292	10	1	7	2	45
ASE_00132	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	38	50336	31	4	25	2	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	59	50334	13	1	9	3	36
ASE_00135	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.51	35	63121	35	4	30	1	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	62	48137	9	1	5	3	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.66	42	48452	25	2	20	3	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	51	40410	13	3	6	4	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	36	54231	19	0	18	1	68
ASE_00140	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	42	70811	26	3	20	3	83
ASE_00142	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	86	67064	14	3	8	3	36
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.40	0.85	44	70073	9	0	8	1	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	82	70787	10	2	5	3	42
ASE_00148	RNaseP_arch links to Rfam database...	0.47	0.28	0.80	43	112521	12	0	11	1	111
ASE_00151	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	70	51923	13	7	3	3	28
ASE_00153	RNaseP_nuc links to Rfam database...	0.60	0.48	0.76	35	57584	26	0	11	15	38
ASE_00154	RNaseP_arch links to Rfam database...	0.61	0.50	0.76	53	65271	18	4	13	1	54
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.35	0.83	50	93468	12	0	10	2	92
ASE_00163	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	65	53228	11	2	6	3	28
ASE_00165	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.74	43	52917	19	1	14	4	58
ASE_00168	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	60683	27	0	12	15	33
ASE_00169	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	36	57236	22	1	18	3	71
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	58	48757	16	2	11	3	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	46	48451	22	1	18	3	48
ASE_00172	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	49	58931	19	4	12	3	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.69	46	61008	24	3	18	3	63
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	59	59966	9	1	5	3	48
ASE_00176	RNaseP_bact_a links to Rfam database...	0.46	0.35	0.60	38	59968	27	1	24	2	72
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	41	44191	24	4	17	3	43
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	61	51288	14	2	9	3	39
ASE_00181	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.76	48	57567	19	3	12	4	58
ASE_00182	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.51	33	84190	33	3	29	1	103
ASE_00183	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	59	61352	17	0	14	3	54
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	56	54550	12	0	9	3	46
ASE_00185	RNaseP_bact_a links to Rfam database...	0.23	0.16	0.32	21	73470	46	8	37	1	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	82	78905	21	2	14	5	50
ASE_00187	RNaseP_arch links to Rfam database...	0.58	0.43	0.78	49	68572	17	1	13	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	58	63107	35	5	20	10	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.42	0.67	38	45394	23	5	14	4	52
ASE_00192	RNaseP_bact_b links to Rfam database...	0.29	0.23	0.38	30	84588	51	6	42	3	103
ASE_00194	RNaseP_bact_b links to Rfam database...	0.60	0.50	0.71	60	73452	32	5	19	8	59
ASE_00196	RNaseP_arch links to Rfam database...	0.66	0.52	0.85	39	31580	9	0	7	2	36
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	80	89156	20	2	15	3	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	62	52583	8	1	4	3	40
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.68	45	46599	24	1	20	3	51
ASE_00204	RNaseP_bact_b links to Rfam database...	0.62	0.53	0.72	59	67814	30	6	17	7	53
ASE_00205	RNaseP_arch links to Rfam database...	0.71	0.59	0.85	53	45994	12	0	9	3	37
ASE_00209	RNaseP_arch links to Rfam database...	0.77	0.65	0.92	57	43009	7	0	5	2	31
ASE_00210	RNaseP_arch links to Rfam database...	0.69	0.54	0.90	35	27222	5	0	4	1	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.82	80	93864	20	2	15	3	68
ASE_00213	RNaseP_arch links to Rfam database...	0.65	0.48	0.86	32	27224	6	0	5	1	34
ASE_00214	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	56205	13	2	8	3	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.26	0.54	26	48468	23	2	20	1	73
ASE_00216	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	48	39281	14	3	8	3	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	64	40401	8	2	3	3	26
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	81	64529	13	2	8	3	36
ASE_00222	RNaseP_arch links to Rfam database...	0.47	0.27	0.82	42	112050	10	0	9	1	115
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.21	0.38	28	78930	47	1	44	2	105
ASE_00228	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.76	44	46913	18	2	12	4	42
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	54	42422	13	1	9	3	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	38	47832	27	5	20	2	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.71	48	38435	23	4	16	3	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.23	0.17	0.32	22	75398	48	3	43	2	107
ASE_00237	RNaseP_nuc links to Rfam database...	0.56	0.48	0.66	27	45712	30	2	12	16	29
ASE_00238	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.76	44	64203	17	3	11	3	70
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.74	46	46603	19	1	15	3	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	63	43885	11	2	6	3	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	84	60982	12	2	7	3	28
ASE_00246	RNaseP_nuc links to Rfam database...	0.60	0.48	0.74	32	48162	25	0	11	14	35
ASE_00247	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	54242	28	0	12	16	33
ASE_00248	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	82	62392	11	2	5	4	32
ASE_00250	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.73	64	78915	25	4	20	1	67
ASE_00252	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.64	58	115350	37	4	28	5	110
ASE_00254	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	48	36794	17	1	13	3	34
ASE_00255	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	65	74603	26	5	18	3	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	56	50978	9	4	2	3	41
ASE_00259	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.73	58	73073	28	1	21	6	63
ASE_00263	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	47	70431	25	3	19	3	73
ASE_00264	RNaseP_nuc links to Rfam database...	0.28	0.14	0.56	14	49116	15	0	11	4	86
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	45084	12	2	7	3	31
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	35	72328	32	0	27	5	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.77	49	55547	18	1	14	3	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.75	44	48146	19	1	14	4	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	66	53230	8	2	3	3	35
ASE_00280	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	61	51931	14	1	10	3	37
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44485	9	2	4	3	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.65	45	77746	26	3	21	2	82
ASE_00283	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.82	60	61703	16	2	11	3	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	58	58242	14	2	9	3	50
ASE_00285	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	49	68930	30	2	25	3	73
ASE_00286	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.82	53	46600	15	1	11	3	39
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	56	54879	14	2	9	3	47
ASE_00288	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.77	50	45991	18	2	13	3	43
ASE_00289	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.70	66	100931	31	3	25	3	91
ASE_00292	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	90	81712	11	3	5	3	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.87	88	114380	16	2	11	3	83
ASE_00295	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	82	73831	10	2	5	3	49
ASE_00296	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.87	78	91716	15	3	9	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.50	0.77	49	52911	18	0	15	3	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	47	67463	21	4	14	3	66
ASE_00299	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.42	24	49398	34	1	32	1	76
ASE_00313	RNaseP_nuc links to Rfam database...	0.39	0.20	0.75	18	62457	17	0	6	11	71
ASE_00316	RNaseP_nuc links to Rfam database...	0.27	0.17	0.41	17	107839	35	3	21	11	81
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.74	64	80113	37	6	17	14	54
ASE_00327	RNaseP_nuc links to Rfam database...	0.28	0.18	0.43	16	57254	24	1	20	3	73
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	74	72679	31	5	13	13	38
ASE_00330	RNaseP_nuc links to Rfam database...	0.28	0.17	0.47	15	56248	24	0	17	7	75
ASE_00332	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	87	81711	15	2	10	3	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.72	0.66	0.78	76	75369	33	6	15	12	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.35	0.24	0.50	17	39306	24	2	15	7	54
ASE_00338	RNaseP_nuc links to Rfam database...	0.31	0.19	0.50	19	66392	21	2	17	2	79
ASE_00339	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	40	80131	37	3	26	8	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.59	38	45992	31	3	23	5	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	83	62390	11	3	5	3	32
ASE_00343	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.35	23	83371	49	4	38	7	90
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	18	2	14	2	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	60	57900	13	1	9	3	47
ASE_00359	RNaseP_arch links to Rfam database...	0.37	0.26	0.51	21	42737	24	1	19	4	59
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.63	0.98	41	29361	2	0	1	1	24
ASE_00361	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	59	75403	7	1	3	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	60	48137	12	2	6	4	31
ASE_00363	RNaseP_bact_a links to Rfam database...	0.77	0.63	0.94	59	51297	7	1	3	3	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	60	54216	12	1	8	3	45
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	47	58586	23	6	14	3	51
ASE_00367	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	61	43002	11	2	6	3	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.86	62	55873	13	1	9	3	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	60	41840	8	1	4	3	24
ASE_00372	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.71	45	51940	21	2	16	3	55
ASE_00374	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44784	9	2	4	3	28
ASE_00375	RNaseP_bact_a links to Rfam database...	0.50	0.39	0.64	43	60311	26	1	23	2	67
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	58	56877	21	2	16	3	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	62	57560	11	1	7	3	45
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	59	45988	12	2	7	3	30
ASE_00380	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.65	40	54884	24	1	21	2	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	60	41837	11	2	6	3	24
ASE_00383	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	70	54538	10	2	5	3	35
ASE_00384	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	56	48450	13	1	9	3	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	38	41846	24	3	18	3	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	59	50339	8	1	4	3	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.71	52	55872	25	2	19	4	52
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	57	45686	14	2	8	4	32
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	58	42130	10	2	5	3	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	53	47830	15	1	11	3	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	58	46904	12	1	8	3	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	41552	7	1	3	3	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	55	41551	12	2	8	2	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	64	54544	10	2	5	3	41
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.82	54	55879	15	0	12	3	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.56	39	57900	33	2	29	2	67
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	51	76961	19	0	16	3	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	63	42419	7	1	3	3	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	61	55877	10	1	6	3	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	57	43008	10	2	4	4	28
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.93	64	48759	8	2	3	3	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.72	43	49395	20	2	15	3	46
ASE_00412	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	44	58250	20	1	16	3	61
ASE_00413	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	46	44495	14	1	9	4	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.19	0.16	0.24	15	46298	48	3	44	1	80
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.31	0.48	32	54880	36	3	31	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	77326	23	3	16	4	51
ASE_00417	RNaseP_arch links to Rfam database...	0.78	0.63	0.95	63	54549	5	0	3	2	37
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.55	0.91	41	38736	6	0	4	2	34
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	50	54877	20	3	16	1	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	46	46904	24	3	18	3	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	79	56865	13	3	6	4	30
ASE_00426	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	39	60994	42	3	39	0	69
ASE_00428	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	75	76542	22	5	14	3	50
ASE_00430	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	44	46906	24	1	20	3	53
ASE_00431	RNaseP_bact_a links to Rfam database...	0.27	0.22	0.34	21	46299	40	8	32	0	74
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.55	0.71	60	68180	34	5	20	9	50
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	2	28	3	68
ASE_00438	RNaseP_bact_a links to Rfam database...	0.41	0.32	0.54	37	65997	33	6	26	1	79
ASE_00441	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.43	27	64198	40	4	32	4	85
ASE_00447	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	83	60286	12	2	7	3	33
ASE_00448	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	81	64169	14	2	9	3	31
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.88	83	70782	14	2	9	3	42
CRW_00013	Intron_gpI links to Rfam database...	0.33	0.21	0.53	24	103695	23	4	17	2	91
CRW_00016	Intron_gpI links to Rfam database...	0.31	0.19	0.51	23	77376	24	7	15	2	97
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.83	0.81	0.86	369	1085172	112	11	49	52	89
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.78	285	1141950	117	9	72	36	189
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.74	0.68	0.82	318	1170827	101	10	60	31	152
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	302	1107443	101	13	58	30	154
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	305	1172369	105	12	60	33	168
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	312	1181569	104	11	61	32	164
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	305	1108933	99	12	55	32	152
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.81	301	1178507	110	5	67	38	164
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	304	1135902	106	11	61	34	159
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.82	312	1201645	103	12	56	35	164
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	300	1152549	106	11	61	34	166
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.74	0.68	0.82	319	1180025	107	12	60	35	152
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.73	0.65	0.82	305	1190824	106	6	61	39	163
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	264	1082289	130	14	89	27	181
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.68	0.61	0.77	287	1178505	117	12	76	29	186
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.76	0.69	0.83	327	1207841	102	11	56	35	148
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.83	321	1198539	99	12	54	33	157
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	299	1105958	104	12	59	33	154
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	311	1218757	105	11	62	32	173
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.78	307	1198533	120	11	75	34	171
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	311	1192362	98	11	56	31	157
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	304	1111915	100	11	56	33	151
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.80	295	1122381	105	12	63	30	167
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	290	1085237	110	10	64	36	156
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.74	0.67	0.82	306	1114897	103	10	58	35	151
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.80	300	1110421	108	12	62	34	153
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.78	271	1129907	113	9	69	35	179
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.72	0.64	0.81	299	1180047	107	10	60	37	165
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.79	284	1117899	114	10	67	37	169
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.82	305	1144968	102	10	58	34	159
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.71	242	1015684	127	13	86	28	190
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.73	0.65	0.81	297	1131394	104	10	59	35	159
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	294	1117886	113	13	67	33	164
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	287	1189280	118	12	74	32	189
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.71	245	1123906	126	12	87	27	216
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.46	181	1445456	267	46	167	54	281
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.48	0.45	0.51	215	1579331	275	41	166	68	267
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.50	0.47	0.53	232	1611469	276	42	167	67	264
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.36	0.32	0.41	170	2126540	318	50	193	75	364
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.49	0.47	0.52	231	1615062	273	41	169	63	265
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.46	0.43	0.49	213	1665792	286	43	177	66	282
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	304	1116392	101	11	58	32	154
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.79	279	1094105	117	6	70	41	166
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.73	0.65	0.82	294	1119399	104	6	57	41	158
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.74	0.66	0.82	294	1098545	110	6	58	46	152
CRW_00610	Intron_gpI links to Rfam database...	0.16	0.09	0.32	7	36293	15	1	14	0	74
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34956	24	7	17	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121749	22	4	18	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.10	0.32	6	56261	13	1	12	0	55
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165006	19	2	17	0	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150963	16	0	12	4	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153149	34	7	25	2	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129785	17	1	9	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.27	0.74	29	63507	14	0	10	4	77
CRW_00634	Intron_gpI links to Rfam database...	0.47	0.30	0.74	28	64582	18	0	10	8	66
CRW_00670	Intron_gpI links to Rfam database...	0.47	0.26	0.86	31	70089	7	0	5	2	89
CRW_00671	Intron_gpI links to Rfam database...	0.56	0.37	0.84	43	62784	10	0	8	2	74
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.28	0.67	31	72344	17	0	15	2	80
CRW_00674	Intron_gpI links to Rfam database...	0.22	0.14	0.37	17	83390	29	5	24	0	107
CRW_00676	Intron_gpI links to Rfam database...	0.03	0.02	0.07	2	93500	31	4	22	5	113
CRW_00692	Intron_gpI links to Rfam database...	0.03	0.01	0.06	1	68619	22	0	15	7	89
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.45	0.42	0.48	201	1636722	295	39	183	73	280
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.68	0.59	0.78	262	1215683	119	6	69	44	184
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	223	945690	133	6	81	46	181
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.73	212	1201733	150	4	76	70	172
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.71	0.63	0.80	280	1137437	111	7	62	42	167
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	216	1152623	164	8	74	82	178
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.34	0.29	0.39	137	1401627	256	36	175	45	333
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	279	1117895	114	13	73	28	191
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	301	1135902	107	11	64	32	163
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.47	0.44	0.50	221	1606085	276	37	185	54	282
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	231	1593565	264	35	174	55	275
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.73	0.68	0.78	294	977526	128	10	71	47	140
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.59	0.36	1.00	5	941	0	0	0	0	9
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.66	0.56	0.77	278	1073486	114	9	72	33	217
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2681	21	1	19	1	23
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27011	17	1	16	0	81
PDB_00828	Purine links to Rfam database...	0.82	0.67	1.00	18	2467	0	0	0	0	9
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.63	0.52	0.77	280	1500414	135	2	82	51	255
PDB_00919	RNaseP_bact_a links to Rfam database...	0.27	0.21	0.35	22	44191	40	3	37	0	81
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01073	SAM links to Rfam database...	0.81	0.74	0.89	25	4343	4	1	2	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.61	0.49	0.76	269	1471116	131	6	79	46	278
PDB_01092	glmS links to Rfam database...	0.70	0.63	0.79	33	10111	12	2	7	3	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.47	0.69	263	1606145	154	8	112	34	299
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.66	0.55	0.80	299	1433595	117	1	76	40	241
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.66	0.56	0.79	296	1204752	112	8	72	32	231
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.69	0.59	0.80	290	1117898	113	9	63	41	201
RFA_00597	Telomerase-vert links to Rfam database...	0.71	0.66	0.76	72	97808	43	8	15	20	37
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.68	0.77	69	84576	40	5	16	19	32
RFA_00599	Telomerase-vert links to Rfam database...	0.54	0.51	0.57	57	101375	62	5	38	19	54
RFA_00600	Telomerase-vert links to Rfam database...	0.53	0.49	0.57	49	120209	62	10	27	25	51
RFA_00601	Telomerase-vert links to Rfam database...	0.74	0.73	0.75	83	99124	49	4	24	21	31
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.68	0.69	79	101361	50	5	30	15	37
RFA_00632	HDV_ribozyme links to Rfam database...	0.25	0.25	0.27	7	4069	19	1	18	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.35	0.36	0.36	10	3977	18	2	16	0	18
RFA_00767	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1999	7	2	5	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1936	7	2	5	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	19	2	14	3	16
RFA_00809	RydC links to Rfam database...	0.30	0.31	0.29	5	2128	12	1	11	0	11
TMR_00173	tmRNA links to Rfam database...	0.41	0.31	0.54	13	42171	18	2	9	7	29
TMR_00357	tmRNA links to Rfam database...	0.19	0.13	0.28	12	82985	38	4	27	7	80
TMR_00601	tmRNA links to Rfam database...	0.67	0.62	0.72	26	58960	30	1	9	20	16
TMR_00603	tmRNA links to Rfam database...	0.78	0.70	0.88	30	60344	30	0	4	26	13
TMR_00611	tmRNA links to Rfam database...	0.48	0.35	0.65	36	61370	19	4	15	0	66
TMR_00696	tmRNA links to Rfam database...	0.35	0.25	0.51	28	85023	34	3	24	7	86

^top

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	28393
Total TN	96907450
Total FP	21745
Total FP CONTRA	2547
Total FP INCONS	15883
Total FP COMP	3315
Total FN	31438

Total Scores
MCC	0.536
Average MCC ± 95% Confidence Intervals	0.562 ± 0.016
Sensitivity	0.475
Positive Predictive Value	0.606
Nr of predictions	363

^top

2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.64	0.61	0.67	46	34122	27	3	20	4	29
ASE_00002	RNaseP_arch links to Rfam database...	0.69	0.60	0.80	44	35456	16	2	9	5	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	64	47818	13	7	6	0	33
ASE_00005	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	57888	18	0	14	4	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	47518	12	1	9	2	35
ASE_00007	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.62	61	59587	42	1	36	5	49
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	50	26045	12	0	11	1	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	66	73838	21	2	14	5	57
ASE_00014	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	26	54184	76	8	67	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.27	0.25	0.29	16	50984	48	3	37	8	48
ASE_00018	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	98	80493	11	0	10	1	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.66	65	73822	33	6	27	0	61
ASE_00021	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	82	104101	18	0	13	5	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.50	0.46	0.54	57	82922	56	3	46	7	67
ASE_00023	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	84160	23	4	15	4	51
ASE_00025	RNaseP_nuc links to Rfam database...	0.36	0.30	0.45	21	78559	74	3	23	48	50
ASE_00026	RNaseP_bact_a links to Rfam database...	0.63	0.53	0.74	58	59607	27	0	20	7	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.55	0.67	69	84563	43	1	33	9	57
ASE_00029	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.67	60	82939	30	3	26	1	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.75	83	85381	28	3	24	1	62
ASE_00031	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.84	77	86644	21	0	15	6	49
ASE_00032	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	65	80104	34	3	28	3	53
ASE_00033	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	48	64900	34	2	30	2	73
ASE_00035	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.45	33	70426	45	8	33	4	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.66	61	75762	35	5	27	3	71
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.61	54	59252	34	0	34	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	53529	47	4	41	2	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.63	0.51	0.78	68	78916	23	1	18	4	65
ASE_00041	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.62	56	57539	37	2	33	2	52
ASE_00042	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	75	89983	43	3	39	1	70
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.78	73	54521	26	3	18	5	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.65	0.54	0.79	56	50332	16	1	14	1	47
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	49	74191	66	5	60	1	81
ASE_00052	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	53	61348	28	1	23	4	59
ASE_00053	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	64	79301	39	2	34	3	69
ASE_00057	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	80	82119	20	4	12	4	54
ASE_00064	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.61	39	45387	31	1	24	6	50
ASE_00066	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	79	72297	14	1	13	0	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.48	0.39	0.59	33	37619	24	2	21	1	52
ASE_00069	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	91	82900	41	5	32	4	49
ASE_00074	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	68	67790	38	3	35	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	103	108689	23	2	17	4	59
ASE_00076	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.74	67	68175	26	2	21	3	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	42	45086	22	6	16	0	44
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	49	43002	21	1	19	1	34
ASE_00079	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	49	55543	19	2	17	0	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	57	71521	56	5	48	3	66
ASE_00081	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	51	49696	24	0	23	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	71	70418	23	0	11	12	45
ASE_00083	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	83	62386	17	0	12	5	27
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	68	53544	19	3	13	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	86	88303	22	3	18	1	58
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.74	59	55531	22	1	20	1	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	82	63454	12	3	7	2	31
ASE_00096	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	65	63436	47	3	42	2	50
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00100	RNaseP_nuc links to Rfam database...	0.35	0.29	0.42	22	82162	73	3	28	42	54
ASE_00102	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	68	117714	76	7	66	3	98
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	67	64172	24	2	20	2	52
ASE_00105	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.52	44	64176	44	5	36	3	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	70	73067	17	0	16	1	57
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.51	0.57	32	46915	55	6	18	31	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.31	0.32	0.31	18	50028	45	15	25	5	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	85	75366	22	5	10	7	31
ASE_00115	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.80	53	54549	19	0	13	6	48
ASE_00116	RNaseP_arch links to Rfam database...	0.22	0.17	0.31	11	31590	28	0	25	3	55
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	47	60647	34	3	29	2	55
ASE_00119	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	89	62738	9	1	7	1	19
ASE_00120	RNaseP_arch links to Rfam database...	0.61	0.53	0.69	50	46899	22	4	18	0	44
ASE_00121	RNaseP_arch links to Rfam database...	0.37	0.25	0.55	23	45108	19	2	17	0	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.42	25	43306	34	0	34	0	63
ASE_00123	RNaseP_bact_a links to Rfam database...	0.34	0.28	0.41	24	38444	39	3	32	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	51	39282	7	0	7	0	37
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	65	53221	21	1	14	6	35
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	52	62742	44	2	39	3	59
ASE_00131	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	43	39290	16	0	7	9	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	60	50317	28	4	22	2	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	31	50326	46	5	41	0	64
ASE_00135	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.56	49	63103	42	0	38	4	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	56	48136	18	0	13	5	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	43	48454	22	1	18	3	55
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	42	40392	38	4	32	2	39
ASE_00139	RNaseP_bact_a links to Rfam database...	0.83	0.71	0.96	74	54208	6	0	3	3	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	71	70797	8	2	6	0	54
ASE_00142	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	66	67074	23	3	18	2	56
ASE_00145	RNaseP_arch links to Rfam database...	0.47	0.42	0.53	47	70036	48	4	38	6	64
ASE_00146	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	45	70803	29	1	27	1	79
ASE_00148	RNaseP_arch links to Rfam database...	0.72	0.66	0.78	102	112445	30	1	27	2	52
ASE_00151	RNaseP_bact_a links to Rfam database...	0.33	0.28	0.40	27	51935	41	5	36	0	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.69	0.67	0.70	49	57560	61	2	19	40	24
ASE_00154	RNaseP_arch links to Rfam database...	0.67	0.63	0.72	67	65248	29	2	24	3	40
ASE_00155	RNaseP_arch links to Rfam database...	0.64	0.51	0.80	73	93437	21	3	15	3	69
ASE_00163	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	53226	43	5	29	9	52
ASE_00165	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	57	52885	34	9	24	1	44
ASE_00168	RNaseP_nuc links to Rfam database...	0.27	0.30	0.24	19	60648	76	18	41	17	45
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.80	57	57220	15	0	14	1	50
ASE_00170	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	50	48762	19	2	14	3	43
ASE_00171	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	56	48426	36	7	27	2	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	65	58924	7	2	5	0	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	48	60978	51	3	46	2	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.79	67	59946	22	3	15	4	40
ASE_00176	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	61	59944	29	4	22	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	44166	33	7	25	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	68	51269	29	2	21	6	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	57	57528	51	3	42	6	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	67	84137	51	3	48	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	61319	30	0	26	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	64	54531	21	3	17	1	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	89	73432	21	3	12	6	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	92	78884	33	3	24	6	40
ASE_00187	RNaseP_arch links to Rfam database...	0.47	0.43	0.53	49	68542	48	5	39	4	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.55	0.44	0.69	45	63125	24	2	18	4	57
ASE_00190	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	41	45407	5	0	3	2	49
ASE_00192	RNaseP_bact_b links to Rfam database...	0.33	0.27	0.40	36	84575	61	6	49	6	97
ASE_00194	RNaseP_bact_b links to Rfam database...	0.49	0.45	0.52	54	73433	53	7	42	4	65
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.77	0.81	58	31554	17	2	12	3	17
ASE_00197	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	74	89141	44	1	37	6	71
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	63	52552	35	6	29	0	39
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	59	46595	11	4	7	0	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.58	0.41	0.81	46	67839	17	0	11	6	66
ASE_00205	RNaseP_arch links to Rfam database...	0.51	0.43	0.59	39	45990	30	2	25	3	51
ASE_00209	RNaseP_arch links to Rfam database...	0.41	0.38	0.46	33	42999	39	5	34	0	55
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	27	6	21	0	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	100	93835	30	2	24	4	48
ASE_00213	RNaseP_arch links to Rfam database...	0.69	0.62	0.76	41	27207	13	1	12	0	25
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	79	56184	22	3	14	5	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	50	48432	37	4	30	3	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	53	39270	17	5	12	0	29
ASE_00217	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.57	31	40416	26	1	22	3	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.73	52	64549	22	1	18	3	65
ASE_00222	RNaseP_arch links to Rfam database...	0.69	0.59	0.79	93	111984	24	3	21	0	64
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.35	40	78890	73	6	67	0	93
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	53	46903	15	11	4	0	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	52	42407	28	8	19	1	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.66	61	47802	33	5	27	1	35
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	51	38429	25	3	20	2	33
ASE_00234	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	58	75382	30	1	25	4	71
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45703	67	18	32	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	64155	56	1	51	4	60
ASE_00240	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.76	56	46591	23	0	18	5	37
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	43	43907	7	0	6	1	44
ASE_00242	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.81	67	60992	18	0	16	2	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.20	0.12	0.33	8	48181	20	5	11	4	59
ASE_00247	RNaseP_nuc links to Rfam database...	0.32	0.28	0.36	18	54235	68	4	28	36	46
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	62	62393	30	1	25	4	52
ASE_00250	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	72	78905	31	7	19	5	59
ASE_00252	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	92	115296	57	4	48	5	76
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	54	36801	1	0	1	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	86	74581	25	3	21	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	54	50980	6	0	6	0	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	51	73076	28	4	22	2	70
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	75	70403	23	5	17	1	45
ASE_00264	RNaseP_nuc links to Rfam database...	0.55	0.51	0.59	51	49054	41	1	35	5	49
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.84	31	45113	10	0	6	4	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	6	32	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.54	49	55521	41	8	33	0	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	40	48121	44	8	36	0	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	54	53244	4	0	3	1	47
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	51928	20	2	17	1	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.94	49	44499	9	0	3	6	39
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	60	77721	35	1	33	1	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.63	45	61704	30	3	24	3	62
ASE_00284	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	66	58213	39	2	30	7	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	82	68900	32	0	24	8	40
ASE_00286	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	39	46580	52	3	43	6	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	70	54856	26	2	18	6	33
ASE_00288	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	27	45984	46	3	42	1	66
ASE_00289	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	102	100913	14	2	8	4	55
ASE_00292	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	84	81699	30	2	25	3	54
ASE_00294	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	123	114343	17	2	13	2	48
ASE_00295	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	65	73817	40	4	34	2	66
ASE_00296	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	32	91686	89	8	80	1	113
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.75	49	52910	16	1	15	0	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.70	59	67444	27	4	21	2	54
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	49373	37	5	27	5	50
ASE_00313	RNaseP_nuc links to Rfam database...	0.71	0.66	0.76	59	62403	36	4	15	17	30
ASE_00316	RNaseP_nuc links to Rfam database...	0.61	0.54	0.70	53	107804	52	4	19	29	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.56	0.74	66	80111	27	7	16	4	52
ASE_00327	RNaseP_nuc links to Rfam database...	0.82	0.79	0.85	70	57209	27	3	9	15	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.45	0.41	0.48	46	72676	54	3	46	5	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.77	0.73	0.80	66	56198	33	0	16	17	24
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	70	81683	58	2	55	1	68
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.45	0.68	52	75390	30	3	21	6	64
ASE_00337	RNaseP_nuc links to Rfam database...	0.61	0.54	0.69	38	39285	29	0	17	12	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.64	0.59	0.69	58	66346	42	5	21	16	40
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	56	80093	63	3	48	12	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	62	45975	25	6	13	6	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.78	65	62398	19	0	18	1	50
ASE_00343	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	50	83345	56	5	36	15	63
ASE_00346	RNaseP_arch links to Rfam database...	0.36	0.33	0.40	32	48125	51	4	44	3	65
ASE_00353	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.74	51	57901	20	2	16	2	56
ASE_00359	RNaseP_arch links to Rfam database...	0.50	0.49	0.52	39	42703	43	3	33	7	41
ASE_00360	RNaseP_arch links to Rfam database...	0.35	0.29	0.41	19	29357	30	3	24	3	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	60	75353	57	6	47	4	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.71	55	48128	25	3	19	3	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	51	51275	35	1	33	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.33	0.43	35	54204	47	4	42	1	70
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.57	58	58552	45	9	34	2	40
ASE_00367	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	43004	34	4	30	0	53
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	73	55856	17	1	15	1	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	53	41833	20	1	18	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	69	51913	26	4	17	5	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.42	33	44771	46	10	36	0	55
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	59	60316	5	0	3	2	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	57	56858	43	3	35	5	48
ASE_00377	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	72	57531	33	4	23	6	35
ASE_00379	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	45996	20	2	9	9	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.53	0.40	0.69	40	54888	23	0	18	5	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	45	41833	30	6	21	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	56	54526	35	5	28	2	49
ASE_00384	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.93	40	48473	7	0	3	4	52
ASE_00385	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.65	35	41851	21	0	19	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	51	50319	38	3	30	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.79	48	55884	17	1	12	4	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	20	0	17	3	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	49	42139	15	2	5	8	36
ASE_00393	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.60	38	47832	32	1	24	7	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.84	72	46885	17	2	12	3	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	59	41553	8	0	4	4	25
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.60	31	41564	25	1	20	4	52
ASE_00397	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	43	54533	39	5	34	0	62
ASE_00398	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	67	55855	25	1	22	2	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	71	57883	17	1	15	1	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	70	76897	61	10	51	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	38	42444	7	0	4	3	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.73	48	55879	18	1	17	0	59
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	46	43006	25	0	19	6	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	63	48748	21	6	11	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	24	49379	53	6	46	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58225	33	8	25	0	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	34	44474	43	13	30	0	47
ASE_00414	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.37	25	46292	48	1	42	5	70
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	55	54865	28	4	22	2	48
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	35	3	28	4	42
ASE_00417	RNaseP_arch links to Rfam database...	0.41	0.41	0.41	41	54516	61	7	51	3	59
ASE_00418	RNaseP_arch links to Rfam database...	0.34	0.27	0.44	20	38736	27	2	23	2	55
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	75	54849	26	4	18	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	46894	25	0	18	7	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	56864	32	4	26	2	50
ASE_00426	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	43	60994	38	2	36	0	65
ASE_00428	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.94	50	76583	4	0	3	1	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	60	46882	35	5	24	6	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.60	47	46282	36	6	25	5	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.60	0.55	0.64	61	68170	42	5	29	8	49
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	52	79277	73	5	67	1	83
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	51	65970	45	0	45	0	65
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.81	83	64159	25	3	16	6	29
ASE_00447	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	68	60283	32	1	26	5	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.22	0.24	25	64155	87	6	75	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.73	65	70787	24	2	22	0	60
CRW_00013	Intron_gpI links to Rfam database...	0.36	0.27	0.48	31	103675	57	8	26	23	84
CRW_00016	Intron_gpI links to Rfam database...	0.80	0.65	0.98	78	77341	14	0	2	12	42
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.80	0.77	0.83	352	1085176	112	13	60	39	106
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	304	1141856	180	27	129	24	170
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.50	0.45	0.54	213	1170824	198	17	161	20	257
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.54	195	1107453	185	23	145	17	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	232	1172361	169	19	134	16	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.49	0.45	0.54	215	1181555	193	31	152	10	261
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.53	196	1108938	184	19	152	13	261
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.59	0.55	0.63	258	1178469	180	16	137	27	207
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.73	280	1135893	125	10	95	20	183
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.57	0.70	272	1201636	139	16	101	22	204
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	171	1152531	233	30	189	14	295
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.67	0.61	0.74	287	1180029	118	21	79	18	184
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.47	0.61	221	1190832	160	15	128	17	247
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.36	0.32	0.39	144	1082291	233	16	205	12	301
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.45	0.41	0.50	195	1178491	206	27	167	12	278
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	210	1207811	232	23	191	18	265
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	254	1198565	129	7	100	22	224
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.66	202	1106023	115	16	87	12	251
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.59	274	1218677	223	21	169	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	221	1198516	206	28	161	17	257
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.37	0.33	0.42	155	1192370	232	35	180	17	313
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.48	0.39	0.59	178	1111985	137	19	104	14	277
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.43	0.57	198	1122402	170	32	119	19	264
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.55	0.50	0.61	224	1085232	162	22	123	17	222
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.73	213	1114978	98	14	66	18	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.40	0.30	0.54	136	1110544	127	18	97	12	317
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.51	0.37	0.70	166	1130018	88	6	66	16	284
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.61	0.54	0.69	252	1180052	131	20	92	19	212
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.60	0.55	0.66	250	1117881	149	21	108	20	203
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	279	1144977	109	11	74	24	185
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.31	0.24	0.40	102	1015772	167	19	132	16	330
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.42	0.33	0.53	149	1131480	147	20	111	16	307
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.77	0.71	0.83	326	1117866	94	16	52	26	132
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.59	0.51	0.68	241	1189298	141	19	95	27	235
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.36	0.31	0.41	142	1123904	219	35	169	15	319
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.21	0.19	0.24	88	1445476	332	57	229	46	374
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.36	169	1579286	334	74	224	36	313
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	171	1611504	271	50	185	36	325
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.34	0.58	183	2126636	205	17	117	71	351
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.32	0.47	157	1615171	217	28	147	42	339
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	146	1665840	278	40	199	39	349
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.61	247	1116358	185	18	142	25	211
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.26	0.36	116	1094139	220	19	186	15	329
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.58	0.40	0.84	179	1119542	50	5	30	15	273
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.65	248	1098523	153	22	110	21	198
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.49	0.52	40	36238	37	9	28	0	41
CRW_00613	Intron_gpI links to Rfam database...	0.74	0.67	0.83	52	34917	19	0	11	8	26
CRW_00614	Intron_gpI links to Rfam database...	0.19	0.19	0.19	11	121713	102	12	35	55	46
CRW_00618	Intron_gpI links to Rfam database...	0.13	0.13	0.14	8	56223	68	13	36	19	53
CRW_00619	Intron_gpI links to Rfam database...	0.41	0.30	0.56	22	164986	76	2	15	59	51
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.22	0.14	14	150874	138	30	57	51	49
CRW_00621	Intron_gpI links to Rfam database...	0.31	0.30	0.33	21	153118	131	6	36	89	50
CRW_00623	Intron_gpI links to Rfam database...	0.41	0.30	0.57	25	129751	78	2	17	59	58
CRW_00633	Intron_gpI links to Rfam database...	0.65	0.49	0.85	52	63485	11	2	7	2	54
CRW_00634	Intron_gpI links to Rfam database...	0.54	0.51	0.58	48	64537	40	6	29	5	46
CRW_00670	Intron_gpI links to Rfam database...	0.80	0.74	0.87	89	70023	15	6	7	2	31
CRW_00671	Intron_gpI links to Rfam database...	0.75	0.70	0.81	82	62734	23	5	14	4	35
CRW_00672	Intron_gpI links to Rfam database...	0.78	0.71	0.85	79	72297	20	6	8	6	32
CRW_00674	Intron_gpI links to Rfam database...	0.60	0.54	0.66	67	83335	36	6	28	2	57
CRW_00676	Intron_gpI links to Rfam database...	0.61	0.57	0.66	65	93430	48	9	24	15	50
CRW_00692	Intron_gpI links to Rfam database...	0.54	0.42	0.69	38	68580	27	6	11	10	52
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.22	0.25	105	1636722	354	42	276	36	376
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.33	0.28	0.40	124	1215709	234	16	171	47	322
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.30	0.27	0.34	108	945681	233	27	184	22	296
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.42	0.29	0.62	111	1201847	113	3	64	46	273
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.40	0.34	0.46	152	1137458	193	30	146	17	295
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.17	0.20	68	1152586	311	44	223	44	326
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.46	0.59	215	1401613	204	32	115	57	255
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	227	1117826	230	18	189	23	243
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	241	1135913	144	19	105	20	223
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.37	0.30	0.45	152	1606193	221	35	148	38	351
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	149	1593608	285	55	193	37	357
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.34	0.41	147	977541	224	31	182	11	287
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.52	0.46	0.58	229	1073451	189	12	153	24	266
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2678	24	1	22	1	23
PDB_00827	Intron_gpI links to Rfam database...	0.64	0.47	0.86	38	26984	8	0	6	2	43
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	263	1500337	220	22	156	42	272
PDB_00919	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	49	44176	30	3	25	2	54
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.47	173	1471098	222	33	166	23	374
PDB_01092	glmS links to Rfam database...	0.76	0.63	0.92	33	10117	5	0	3	2	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.50	0.63	280	1606082	191	20	146	25	282
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.53	0.67	288	1433540	169	14	129	26	252
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.55	0.44	0.70	230	1204799	110	12	87	11	297
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	227	1117836	223	19	178	26	264
RFA_00597	Telomerase-vert links to Rfam database...	0.57	0.49	0.67	53	97824	46	4	22	20	56
RFA_00598	Telomerase-vert links to Rfam database...	0.62	0.54	0.71	55	84589	43	2	20	21	46
RFA_00599	Telomerase-vert links to Rfam database...	0.69	0.68	0.70	75	101368	52	8	24	20	36
RFA_00600	Telomerase-vert links to Rfam database...	0.55	0.57	0.52	57	120186	79	15	37	27	43
RFA_00601	Telomerase-vert links to Rfam database...	0.27	0.21	0.35	24	99167	52	9	35	8	90
RFA_00602	Telomerase-vert links to Rfam database...	0.54	0.53	0.55	62	101363	68	16	34	18	54
RFA_00632	HDV_ribozyme links to Rfam database...	0.24	0.25	0.25	7	4067	21	2	19	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	3978	16	2	14	0	17
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	7	1	6	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.52	0.56	0.50	10	1933	10	4	6	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	5	0	2	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1936	7	1	6	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	1941	2	0	2	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	19	2	14	3	16
RFA_00809	RydC links to Rfam database...	0.37	0.38	0.38	6	2129	10	1	9	0	10
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.28	15	42141	56	15	24	17	27
TMR_00357	tmRNA links to Rfam database...	0.44	0.40	0.48	37	82951	54	13	27	14	55
TMR_00601	tmRNA links to Rfam database...	0.38	0.17	0.88	7	58988	33	0	1	32	35
TMR_00603	tmRNA links to Rfam database...	0.68	0.65	0.72	28	60339	61	6	5	50	15
TMR_00611	tmRNA links to Rfam database...	0.62	0.59	0.65	60	61332	36	7	26	3	42
TMR_00696	tmRNA links to Rfam database...	0.14	0.11	0.16	13	84999	75	15	51	9	101

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

2. Individual counts for MXScarna(seed) [ download as .csv ]

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]