CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Multilign(20)		Contrafold
MCC	0.651	>	0.603
Average MCC ± 95% Confidence Intervals	0.656 ± 0.017	>	0.607 ± 0.021
Sensitivity	0.591	>	0.577
Positive Predictive Value	0.718	>	0.630
Total TP	11862	>	11599
Total TN	11495758	>	11493865
Total FP	5464	<	7884
Total FP CONTRA	615	<	992
Total FP INCONS	4034	<	5813
Total FP COMP	815	<	1079
Total FN	8223	<	8486
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Multilign(20) and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Multilign(20) and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Multilign(20) and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Multilign(20) and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Multilign(20) and Contrafold).

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Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

Total Base Pair Counts
Total TP	11862
Total TN	11495758
Total FP	5464
Total FP CONTRA	615
Total FP INCONS	4034
Total FP COMP	815
Total FN	8223

Total Scores
MCC	0.651
Average MCC ± 95% Confidence Intervals	0.656 ± 0.017
Sensitivity	0.591
Positive Predictive Value	0.718
Nr of predictions	196

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2. Individual counts for Multilign(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	77	57876	23	0	17	6	40
ASE_00006	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.81	71	47498	22	1	16	5	22
ASE_00007	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	69	59596	25	0	20	5	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	69	73820	36	3	28	5	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	90	80494	19	1	16	2	44
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.56	54	73823	43	4	39	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.75	82	104086	30	5	23	2	78
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	67	70402	35	3	28	4	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	54	59255	31	4	27	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	54	53540	37	3	31	3	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.75	83	78893	28	0	27	1	50
ASE_00041	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	72	57538	21	1	19	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.61	60	90002	41	2	36	3	85
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	81	54524	12	0	10	2	24
ASE_00064	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	60	45381	21	0	10	11	29
ASE_00068	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	60	37602	17	0	13	4	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	93	67789	14	1	13	0	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	104	108691	24	3	13	8	58
ASE_00077	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	47	45080	33	5	18	10	39
ASE_00078	RNaseP_bact_a links to Rfam database...	0.81	0.77	0.84	64	42995	18	0	12	6	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	59	71528	44	5	39	0	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	73	49685	13	0	12	1	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	62	70402	47	3	33	11	54
ASE_00083	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	81	62392	10	0	8	2	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	54	53547	27	1	26	0	45
ASE_00087	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.57	57	88310	43	2	41	0	87
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	46	55534	36	5	26	5	55
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	71	63452	24	0	23	1	42
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	91	64514	16	2	13	1	29
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	90	64160	16	1	10	5	29
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	54	64168	41	6	33	2	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.73	72	73055	28	1	25	2	55
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	62	54541	12	1	11	0	39
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	50	60645	33	1	30	2	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	54	62747	36	1	33	2	54
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	43	38431	33	1	28	4	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.71	57	40390	30	3	20	7	25
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	53230	13	1	8	4	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	70	62742	23	2	21	0	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.54	36	39273	36	2	29	5	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	64	50317	23	3	19	1	31
ASE_00135	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	53	63102	40	6	29	5	56
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	48124	16	0	9	7	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	47	48432	42	0	37	5	51
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.87	59	40402	12	3	6	3	22
ASE_00140	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.55	48	70789	40	3	36	1	77
ASE_00142	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	82	67056	25	3	20	2	40
ASE_00146	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	67	70788	22	1	20	1	57
ASE_00153	RNaseP_nuc links to Rfam database...	0.38	0.37	0.39	27	57560	76	9	34	33	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	62	53214	27	7	18	2	31
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	49	52893	35	6	27	2	52
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	72	48748	10	2	6	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	75	48438	8	0	3	5	19
ASE_00172	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	61	58916	25	3	16	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.63	49	60997	32	1	28	3	60
ASE_00175	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	59	59950	27	2	20	5	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	58	44184	15	1	10	4	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	15	3	9	3	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	67	57536	30	0	27	3	39
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	55	84158	42	2	40	0	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	71	61333	23	0	21	2	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	69	54534	20	0	12	8	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	48	73434	58	2	52	4	80
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.37	0.57	33	45393	28	4	21	3	57
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.50	52	89150	54	1	50	3	93
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	59	52564	30	3	24	3	43
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	50	46583	36	0	32	4	46
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	88	93842	33	1	30	2	60
ASE_00214	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	81	56187	17	3	9	5	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.18	0.15	0.23	15	48450	55	4	47	4	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	55	39266	26	2	17	7	27
ASE_00217	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	41	40395	39	1	33	5	49
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.74	66	64531	24	0	23	1	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	58	46890	26	4	19	3	28
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	42406	32	4	26	2	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	38	47819	42	3	35	4	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.81	68	38419	17	6	10	1	16
ASE_00234	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.76	78	75363	27	6	19	2	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	64169	42	6	35	1	63
ASE_00241	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	62	43884	15	1	9	5	25
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.80	74	60982	24	1	18	5	38
ASE_00254	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	38	36780	39	5	33	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.78	62	50960	25	1	17	7	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	49	70405	47	6	40	1	71
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	60	45077	21	1	12	8	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	63	72292	38	2	33	3	65
ASE_00274	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.67	53	55532	28	5	21	2	50
ASE_00277	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	68	48123	16	0	14	2	23
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.82	74	53211	20	2	14	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	65	51920	21	1	17	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	64	44479	15	1	7	7	24
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.56	53	77721	42	3	38	1	74
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	72	61686	23	0	18	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	64	58221	29	3	23	3	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.67	62	68914	32	3	27	2	60
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	68	46590	10	1	6	3	24
ASE_00287	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54861	28	0	27	1	45
ASE_00292	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.84	89	81704	22	2	15	5	49
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	108	114359	16	1	13	2	63
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	78	91704	26	1	23	2	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.72	52	52903	21	1	19	1	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.53	49	67435	46	2	42	2	64
ASE_00328	RNaseP_bact_b links to Rfam database...	0.76	0.67	0.87	75	72685	23	1	10	12	37
ASE_00332	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.55	51	81717	44	3	39	2	87
ASE_00340	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	46	45983	31	8	19	4	39
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	87	62382	12	2	10	0	28
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	66	57874	35	2	28	5	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	62	75376	29	3	25	1	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.86	59	48136	10	0	10	0	32
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	69	51283	14	1	7	6	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	59	54202	29	1	23	5	46
ASE_00366	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	56	58570	31	6	21	4	42
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	46	42995	36	1	29	6	40
ASE_00369	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.92	79	55859	7	1	6	0	28
ASE_00370	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	59	51926	19	1	17	1	41
ASE_00374	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	64	44779	8	1	6	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	64	56863	28	1	25	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	59	57544	29	3	24	2	48
ASE_00379	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.61	43	45986	38	0	27	11	46
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.85	76	54526	14	4	9	1	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	60	48436	26	4	16	6	32
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	58	50320	27	5	20	2	38
ASE_00387	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.70	66	55851	29	0	28	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	42	45678	40	2	31	7	47
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	17	0	8	9	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	59	47818	20	1	17	2	34
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	67	46895	13	4	5	4	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	58	41541	21	0	17	4	26
ASE_00396	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	41546	19	2	13	4	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	72	54524	23	1	18	4	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.76	64	55861	29	1	19	9	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	73	57879	19	1	17	1	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.63	55	76940	40	0	33	7	71
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	59	42416	15	1	10	4	26
ASE_00403	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	62	55863	25	3	17	5	45
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	62	42996	17	1	12	4	23
ASE_00406	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	48752	15	0	7	8	25
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.62	47	49379	30	10	19	1	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58226	34	3	29	2	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	46	44479	27	2	24	1	35
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	59	54853	40	2	32	6	44
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	75	77327	28	1	18	9	52
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	70	54862	16	3	11	2	33
ASE_00422	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	59	46883	30	4	25	1	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.92	84	56862	10	1	6	3	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	76522	47	4	42	1	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	46881	16	2	14	0	23
ASE_00437	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	81	79293	27	1	26	0	54
ASE_00441	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	64	64178	19	2	17	0	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	64163	39	2	30	7	46
ASE_00451	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	75	70779	24	1	21	2	50
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.71	0.71	79	101363	50	13	20	17	32
RFA_00601	Telomerase-vert links to Rfam database...	0.58	0.54	0.61	62	99134	50	10	29	11	52
TMR_00017	tmRNA links to Rfam database...	0.59	0.56	0.62	57	67069	39	8	27	4	45
TMR_00018	tmRNA links to Rfam database...	0.59	0.54	0.65	50	64543	31	7	20	4	42
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.79	73	71161	24	1	18	5	37
TMR_00042	tmRNA links to Rfam database...	0.61	0.57	0.65	56	62749	34	7	23	4	42
TMR_00046	tmRNA links to Rfam database...	0.65	0.63	0.67	60	62746	35	9	20	6	36
TMR_00048	tmRNA links to Rfam database...	0.59	0.55	0.63	52	64898	38	6	24	8	43
TMR_00080	tmRNA links to Rfam database...	0.51	0.46	0.56	44	70422	34	10	24	0	52
TMR_00082	tmRNA links to Rfam database...	0.65	0.59	0.71	57	67816	30	7	16	7	39
TMR_00123	tmRNA links to Rfam database...	0.64	0.59	0.68	60	66342	34	4	24	6	41
TMR_00137	tmRNA links to Rfam database...	0.33	0.28	0.38	25	61009	44	9	32	3	64
TMR_00142	tmRNA links to Rfam database...	0.62	0.64	0.61	65	70769	49	12	30	7	37
TMR_00207	tmRNA links to Rfam database...	0.40	0.35	0.45	36	72310	49	6	38	5	67
TMR_00257	tmRNA links to Rfam database...	0.68	0.61	0.76	60	67082	27	4	15	8	38
TMR_00271	tmRNA links to Rfam database...	0.64	0.56	0.74	51	64192	20	6	12	2	40
TMR_00366	tmRNA links to Rfam database...	0.64	0.60	0.67	60	67807	40	12	17	11	40
TMR_00378	tmRNA links to Rfam database...	0.67	0.63	0.71	61	67810	38	5	20	13	36
TMR_00399	tmRNA links to Rfam database...	0.48	0.45	0.52	42	64899	46	9	30	7	52
TMR_00404	tmRNA links to Rfam database...	0.59	0.59	0.60	54	67438	49	12	24	13	38
TMR_00427	tmRNA links to Rfam database...	0.53	0.41	0.69	40	67470	22	7	11	4	57
TMR_00443	tmRNA links to Rfam database...	0.67	0.59	0.77	61	67082	22	4	14	4	43
TMR_00451	tmRNA links to Rfam database...	0.52	0.45	0.60	40	63479	31	7	20	4	49
TMR_00458	tmRNA links to Rfam database...	0.70	0.63	0.77	59	63469	21	4	14	3	34
TMR_00469	tmRNA links to Rfam database...	0.75	0.73	0.78	73	64526	30	7	14	9	27
TMR_00472	tmRNA links to Rfam database...	0.76	0.73	0.80	71	64531	23	7	11	5	26
TMR_00519	tmRNA links to Rfam database...	0.60	0.57	0.64	54	63106	34	12	18	4	41
TMR_00520	tmRNA links to Rfam database...	0.67	0.62	0.73	61	63106	31	4	19	8	38
TMR_00522	tmRNA links to Rfam database...	0.53	0.47	0.60	46	63113	36	9	22	5	51
TMR_00528	tmRNA links to Rfam database...	0.51	0.45	0.58	44	63114	37	10	22	5	53
TMR_00568	tmRNA links to Rfam database...	0.62	0.59	0.65	58	60637	40	8	23	9	41
TMR_00571	tmRNA links to Rfam database...	0.69	0.65	0.73	64	60638	34	10	14	10	35
TMR_00580	tmRNA links to Rfam database...	0.62	0.61	0.63	61	60629	46	10	26	10	39
TMR_00584	tmRNA links to Rfam database...	0.65	0.61	0.69	59	60989	36	6	21	9	38
TMR_00586	tmRNA links to Rfam database...	0.60	0.59	0.61	57	60982	43	11	25	7	40
TMR_00616	tmRNA links to Rfam database...	0.65	0.63	0.68	62	67070	35	7	22	6	37
TMR_00699	tmRNA links to Rfam database...	0.69	0.60	0.80	61	67085	16	2	13	1	41
TMR_00702	tmRNA links to Rfam database...	0.63	0.54	0.73	54	67087	26	7	13	6	46

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	11599
Total TN	11493865
Total FP	7884
Total FP CONTRA	992
Total FP INCONS	5813
Total FP COMP	1079
Total FN	8486

Total Scores
MCC	0.603
Average MCC ± 95% Confidence Intervals	0.607 ± 0.021
Sensitivity	0.577
Positive Predictive Value	0.630
Nr of predictions	196

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	48	40395	34	2	25	7	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61315	40	2	29	9	34
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00198	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	70	52554	30	4	22	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	1	0	0	1	6
PDB_00829	Purine links to Rfam database...	0.84	0.75	0.95	18	2259	1	0	1	0	6
PDB_01020	Purine links to Rfam database...	0.81	0.74	0.89	17	2259	3	1	1	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
TMR_00017	tmRNA links to Rfam database...	0.49	0.44	0.54	45	67078	42	5	33	4	57
TMR_00018	tmRNA links to Rfam database...	0.38	0.37	0.40	34	64535	55	13	38	4	58
TMR_00038	tmRNA links to Rfam database...	0.26	0.25	0.26	28	71146	85	15	64	6	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	74	13	57	4	69
TMR_00046	tmRNA links to Rfam database...	0.60	0.58	0.62	56	62745	44	6	28	10	40
TMR_00048	tmRNA links to Rfam database...	0.40	0.41	0.40	39	64882	69	13	46	10	56
TMR_00080	tmRNA links to Rfam database...	0.43	0.42	0.44	40	70410	50	15	35	0	56
TMR_00082	tmRNA links to Rfam database...	0.29	0.28	0.30	27	67807	64	9	53	2	69
TMR_00123	tmRNA links to Rfam database...	0.53	0.51	0.55	52	66335	52	4	39	9	49
TMR_00137	tmRNA links to Rfam database...	0.37	0.34	0.41	30	61001	53	6	38	9	59
TMR_00142	tmRNA links to Rfam database...	0.57	0.58	0.56	59	70771	61	13	33	15	43
TMR_00207	tmRNA links to Rfam database...	0.43	0.40	0.48	41	72304	50	5	40	5	62
TMR_00257	tmRNA links to Rfam database...	0.25	0.22	0.27	22	67080	65	2	57	6	76
TMR_00271	tmRNA links to Rfam database...	0.64	0.62	0.67	56	64177	40	6	22	12	35
TMR_00366	tmRNA links to Rfam database...	0.52	0.50	0.53	50	67802	55	12	32	11	50
TMR_00378	tmRNA links to Rfam database...	0.24	0.25	0.24	24	67797	86	17	58	11	73
TMR_00399	tmRNA links to Rfam database...	0.44	0.43	0.47	40	64894	52	16	30	6	54
TMR_00404	tmRNA links to Rfam database...	0.56	0.58	0.55	53	67431	62	11	33	18	39
TMR_00427	tmRNA links to Rfam database...	0.45	0.42	0.48	41	67443	49	10	34	5	56
TMR_00443	tmRNA links to Rfam database...	0.57	0.51	0.65	53	67079	36	6	23	7	51
TMR_00451	tmRNA links to Rfam database...	0.19	0.19	0.18	17	63453	80	18	58	4	72
TMR_00458	tmRNA links to Rfam database...	0.32	0.30	0.35	28	63465	60	11	42	7	65
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.53	53	64520	51	13	34	4	47
TMR_00472	tmRNA links to Rfam database...	0.64	0.64	0.64	62	64523	43	12	23	8	35
TMR_00519	tmRNA links to Rfam database...	0.33	0.32	0.35	30	63105	69	8	47	14	65
TMR_00520	tmRNA links to Rfam database...	0.44	0.41	0.48	41	63104	56	9	36	11	58
TMR_00522	tmRNA links to Rfam database...	0.36	0.35	0.38	34	63100	65	12	44	9	63
TMR_00528	tmRNA links to Rfam database...	0.36	0.36	0.35	35	63091	75	20	44	11	62
TMR_00568	tmRNA links to Rfam database...	0.51	0.51	0.53	50	60631	51	6	39	6	49
TMR_00571	tmRNA links to Rfam database...	0.65	0.64	0.66	63	60631	44	7	25	12	36
TMR_00580	tmRNA links to Rfam database...	0.41	0.41	0.41	41	60625	63	15	45	3	59
TMR_00584	tmRNA links to Rfam database...	0.63	0.61	0.65	59	60984	45	3	29	13	38
TMR_00586	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60977	63	11	47	5	57
TMR_00616	tmRNA links to Rfam database...	0.42	0.41	0.42	41	67063	65	12	45	8	58
TMR_00699	tmRNA links to Rfam database...	0.67	0.62	0.72	63	67074	29	4	20	5	39
TMR_00702	tmRNA links to Rfam database...	0.36	0.32	0.40	32	67081	57	5	43	9	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

2. Individual counts for Multilign(20) [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]