CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(20)		Fold
MCC	0.566	>	0.506
Average MCC ± 95% Confidence Intervals	0.559 ± 0.021	>	0.543 ± 0.026
Sensitivity	0.445	<	0.502
Positive Predictive Value	0.722	>	0.512
Total TP	8722	<	9840
Total TN	21474826	>	21467685
Total FP	3823	<	10656
Total FP CONTRA	484	<	1376
Total FP INCONS	2876	<	8007
Total FP COMP	463	<	1273
Total FN	10890	>	9772
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(20) and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(20) and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(20) and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(20) and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(20) and Fold).

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Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	8722
Total TN	21474826
Total FP	3823
Total FP CONTRA	484
Total FP INCONS	2876
Total FP COMP	463
Total FN	10890

Total Scores
MCC	0.566
Average MCC ± 95% Confidence Intervals	0.559 ± 0.021
Sensitivity	0.445
Positive Predictive Value	0.722
Nr of predictions	159

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.34	0.76	55	108739	19	1	16	2	107
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00294	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.83	63	114405	14	4	9	1	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.75	0.70	0.81	330	1178473	93	14	63	16	143
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	325	1198537	73	14	50	9	153
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.83	302	1129893	75	12	49	14	148
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.85	328	1117874	75	11	47	17	125
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.39	0.31	0.49	160	1988690	189	26	139	24	357
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.31	0.25	0.40	122	1615195	206	23	163	20	374
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.36	146	1665818	288	38	223	27	349
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	318	1137416	79	8	44	27	129
PDB_00571	tRNA links to Rfam database...	0.59	0.52	0.68	13	3302	7	0	6	1	12
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.82	0.67	1.00	16	2262	0	0	0	0	8
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01073	SAM links to Rfam database...	0.66	0.44	1.00	15	4356	1	0	0	1	19
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.73	0.62	0.86	337	1433581	81	3	50	28	203
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.34	0.58	38	101409	33	1	27	5	73
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00602	Telomerase-vert links to Rfam database...	0.24	0.16	0.35	19	101421	41	2	33	6	97
TMR_00017	tmRNA links to Rfam database...	0.72	0.60	0.87	61	67091	13	0	9	4	41
TMR_00018	tmRNA links to Rfam database...	0.56	0.49	0.65	45	64551	29	6	18	5	47
TMR_00038	tmRNA links to Rfam database...	0.67	0.53	0.84	58	71184	13	5	6	2	52
TMR_00042	tmRNA links to Rfam database...	0.56	0.44	0.70	43	62774	19	1	17	1	55
TMR_00046	tmRNA links to Rfam database...	0.60	0.52	0.69	50	62763	23	6	16	1	46
TMR_00048	tmRNA links to Rfam database...	0.56	0.48	0.66	46	64910	29	9	15	5	49
TMR_00080	tmRNA links to Rfam database...	0.54	0.49	0.60	47	70422	35	12	19	4	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.71	48	67828	25	7	13	5	48
TMR_00123	tmRNA links to Rfam database...	0.64	0.50	0.81	51	66367	17	3	9	5	50
TMR_00137	tmRNA links to Rfam database...	0.54	0.46	0.64	41	61011	28	5	18	5	48
TMR_00142	tmRNA links to Rfam database...	0.64	0.60	0.69	61	70788	34	12	15	7	41
TMR_00207	tmRNA links to Rfam database...	0.53	0.42	0.66	43	72325	26	4	18	4	60
TMR_00257	tmRNA links to Rfam database...	0.56	0.48	0.64	47	67088	29	4	22	3	51
TMR_00271	tmRNA links to Rfam database...	0.55	0.42	0.72	38	64208	20	1	14	5	53
TMR_00332	tmRNA links to Rfam database...	0.70	0.58	0.85	57	67094	16	0	10	6	42
TMR_00366	tmRNA links to Rfam database...	0.53	0.49	0.58	49	67811	43	8	28	7	51
TMR_00378	tmRNA links to Rfam database...	0.57	0.51	0.64	49	67820	37	9	18	10	48
TMR_00399	tmRNA links to Rfam database...	0.61	0.47	0.79	44	64924	18	2	10	6	50
TMR_00404	tmRNA links to Rfam database...	0.53	0.41	0.68	38	67472	21	8	10	3	54
TMR_00427	tmRNA links to Rfam database...	0.20	0.13	0.30	13	67485	30	4	26	0	84
TMR_00443	tmRNA links to Rfam database...	0.73	0.61	0.88	63	67089	13	0	9	4	41
TMR_00451	tmRNA links to Rfam database...	0.52	0.46	0.58	41	63475	36	8	22	6	48
TMR_00458	tmRNA links to Rfam database...	0.50	0.41	0.61	38	63484	29	4	20	5	55
TMR_00469	tmRNA links to Rfam database...	0.64	0.48	0.84	48	64563	10	3	6	1	52
TMR_00472	tmRNA links to Rfam database...	0.70	0.61	0.81	59	64547	15	8	6	1	38
TMR_00519	tmRNA links to Rfam database...	0.49	0.37	0.65	35	63136	23	2	17	4	60
TMR_00520	tmRNA links to Rfam database...	0.44	0.35	0.54	35	63125	36	5	25	6	64
TMR_00522	tmRNA links to Rfam database...	0.49	0.39	0.60	38	63127	29	8	17	4	59
TMR_00528	tmRNA links to Rfam database...	0.48	0.41	0.57	40	63120	36	7	23	6	57
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.63	47	73461	28	8	20	0	57
TMR_00568	tmRNA links to Rfam database...	0.72	0.64	0.82	63	60649	18	3	11	4	36
TMR_00571	tmRNA links to Rfam database...	0.76	0.67	0.86	66	60649	15	2	9	4	33
TMR_00580	tmRNA links to Rfam database...	0.75	0.66	0.86	66	60649	15	2	9	4	34
TMR_00584	tmRNA links to Rfam database...	0.71	0.62	0.81	60	61001	17	4	10	3	37
TMR_00586	tmRNA links to Rfam database...	0.71	0.63	0.79	61	60998	20	5	11	4	36
TMR_00616	tmRNA links to Rfam database...	0.67	0.58	0.79	57	67089	16	6	9	1	42
TMR_00699	tmRNA links to Rfam database...	0.57	0.43	0.75	44	67102	19	1	14	4	58
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	25	3	17	5	57
TMR_00703	tmRNA links to Rfam database...	0.58	0.45	0.75	45	67468	19	3	12	4	54

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	9840
Total TN	21467685
Total FP	10656
Total FP CONTRA	1376
Total FP INCONS	8007
Total FP COMP	1273
Total FN	9772

Total Scores
MCC	0.506
Average MCC ± 95% Confidence Intervals	0.543 ± 0.026
Sensitivity	0.502
Positive Predictive Value	0.512
Nr of predictions	159

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	66	47799	34	9	21	4	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	57	59579	56	2	47	7	53
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	69	80478	56	1	53	2	65
ASE_00022	RNaseP_bact_b links to Rfam database...	0.28	0.27	0.29	34	82911	86	6	77	3	90
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.70	0.75	88	84548	39	6	24	9	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	28	70384	91	9	79	3	90
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78881	67	4	57	6	72
ASE_00064	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	34	45357	67	6	54	7	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	41	37598	41	2	34	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	99	108668	53	4	40	9	63
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	48	45067	41	4	31	6	38
ASE_00078	RNaseP_bact_a links to Rfam database...	0.76	0.76	0.76	63	42988	26	3	17	6	20
ASE_00080	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	66	71516	54	5	44	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.52	50	49673	49	5	42	2	47
ASE_00082	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	85	70395	32	3	17	12	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	64	62375	47	8	34	5	46
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.58	59	53527	45	6	36	3	40
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	103	88281	32	3	23	6	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	56	63434	60	12	44	4	57
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	80	64159	28	1	21	6	39
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	79	73035	44	2	37	5	48
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	69	54514	40	5	27	8	32
ASE_00119	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.82	87	62729	21	2	17	2	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	38425	39	2	33	4	42
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	52	63086	59	7	45	7	57
ASE_00138	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	39	40393	43	4	34	5	42
ASE_00142	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	80	67048	38	3	30	5	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	69	70769	42	1	37	4	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.60	0.54	44	57549	73	9	28	36	29
ASE_00163	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.34	29	53216	65	5	51	9	64
ASE_00170	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.83	71	48742	24	2	13	9	22
ASE_00174	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	60968	56	8	46	2	56
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	42	44166	45	7	38	0	42
ASE_00180	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	54	51267	46	3	36	7	46
ASE_00182	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	75	84128	55	5	47	3	61
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54514	34	2	28	4	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	94	73421	27	1	20	6	34
ASE_00186	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	88	78876	45	3	36	6	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.59	0.57	0.62	51	45369	38	3	28	7	39
ASE_00212	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	85	93820	64	3	53	8	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	76	56180	34	3	21	10	27
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	57	48424	39	5	30	4	42
ASE_00217	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	27	40388	63	4	51	8	63
ASE_00221	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	64517	46	2	40	4	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	46882	47	13	30	4	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.73	61	42403	29	1	21	7	26
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	74	64157	36	2	28	6	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.68	60	43868	31	2	26	3	27
ASE_00248	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.40	40	62382	61	4	55	2	74
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	65	74567	61	4	55	2	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.50	46	50948	50	2	44	4	51
ASE_00267	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	55	45069	36	2	24	10	33
ASE_00270	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.85	101	72271	24	1	17	6	27
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	49	7	39	3	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	49	51911	47	8	35	4	49
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	66	44471	23	0	14	9	22
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.74	73	61677	34	3	23	8	34
ASE_00285	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	93	68898	25	2	13	10	29
ASE_00292	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	58	81685	71	2	65	4	80
ASE_00294	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	96	114332	57	3	50	4	75
ASE_00297	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	49	52871	56	8	47	1	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	51	1	46	4	57
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.64	0.65	75	80084	46	11	30	5	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.72	73	72669	43	4	25	14	39
ASE_00332	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	64	81683	66	2	61	3	74
ASE_00335	RNaseP_bact_b links to Rfam database...	0.39	0.39	0.40	45	75353	75	9	59	7	71
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	27	6	14	7	22
ASE_00353	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	60	57863	51	4	43	4	47
ASE_00361	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	65	75343	61	11	47	3	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	54	48114	40	2	35	3	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	52	51266	49	3	39	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	76	54185	32	1	23	8	29
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	58550	63	10	52	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.52	0.48	45	42977	52	4	45	3	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	36	6	24	6	31
ASE_00376	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	62	56852	47	1	38	8	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.68	56	41823	31	6	20	5	28
ASE_00384	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48425	40	3	35	2	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	50307	49	7	40	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	58	55848	44	6	33	5	46
ASE_00388	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	50	45673	41	2	28	11	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	44	47808	50	2	41	7	49
ASE_00394	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	70	46882	24	2	17	5	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	41528	37	3	30	4	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	44	41533	43	4	35	4	39
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	76	54518	29	2	19	8	29
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	60	55851	43	1	33	9	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	66	57871	38	1	32	5	40
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	42406	22	2	15	5	22
ASE_00404	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	35	42991	54	1	44	9	50
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	25	1	14	10	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	41	49370	53	5	39	9	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	48	58209	57	9	45	3	57
ASE_00416	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	79	77301	49	3	38	8	48
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.75	76	54845	27	9	16	2	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.59	63	56846	44	7	37	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	93	76520	29	3	20	6	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	46877	33	5	21	7	29
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	56	79281	68	0	64	4	79
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.23	26	64147	95	8	80	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	76	70762	43	3	35	5	49
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.74	0.72	82	101361	60	10	22	28	29
RFA_00601	Telomerase-vert links to Rfam database...	0.42	0.46	0.39	52	99103	95	33	47	15	62
RFA_00602	Telomerase-vert links to Rfam database...	0.60	0.63	0.57	73	101347	77	23	32	22	43
TMR_00017	tmRNA links to Rfam database...	0.56	0.55	0.58	56	67064	45	8	33	4	46
TMR_00018	tmRNA links to Rfam database...	0.41	0.42	0.40	39	64522	63	14	45	4	53
TMR_00038	tmRNA links to Rfam database...	0.12	0.13	0.11	14	71131	112	12	96	4	96
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.34	34	62736	68	3	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.26	27	62732	80	11	65	4	69
TMR_00048	tmRNA links to Rfam database...	0.23	0.24	0.22	23	64877	85	17	63	5	72
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.67	0.67	0.68	64	67802	37	9	21	7	32
TMR_00123	tmRNA links to Rfam database...	0.44	0.45	0.44	45	66328	62	10	47	5	56
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.15	15	60978	90	11	71	8	74
TMR_00142	tmRNA links to Rfam database...	0.49	0.51	0.48	52	70767	69	13	44	12	50
TMR_00207	tmRNA links to Rfam database...	0.30	0.30	0.30	31	72287	76	8	64	4	72
TMR_00257	tmRNA links to Rfam database...	0.27	0.28	0.26	27	67058	81	14	62	5	71
TMR_00271	tmRNA links to Rfam database...	0.63	0.62	0.65	56	64175	41	6	24	11	35
TMR_00332	tmRNA links to Rfam database...	0.48	0.48	0.48	48	67061	56	14	38	4	51
TMR_00366	tmRNA links to Rfam database...	0.46	0.46	0.46	46	67796	65	14	40	11	54
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	19	56	11	68
TMR_00399	tmRNA links to Rfam database...	0.27	0.29	0.26	27	64875	85	12	66	7	67
TMR_00404	tmRNA links to Rfam database...	0.37	0.40	0.34	37	67420	82	28	43	11	55
TMR_00427	tmRNA links to Rfam database...	0.27	0.28	0.26	27	67424	82	18	59	5	70
TMR_00443	tmRNA links to Rfam database...	0.53	0.50	0.55	52	67067	49	11	31	7	52
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63444	89	19	66	4	72
TMR_00458	tmRNA links to Rfam database...	0.49	0.49	0.48	46	63451	56	10	39	7	47
TMR_00469	tmRNA links to Rfam database...	0.34	0.34	0.33	34	64518	77	10	58	9	66
TMR_00472	tmRNA links to Rfam database...	0.48	0.49	0.47	48	64518	67	11	43	13	49
TMR_00519	tmRNA links to Rfam database...	0.18	0.20	0.17	19	63079	102	18	74	10	76
TMR_00520	tmRNA links to Rfam database...	0.48	0.48	0.48	48	63091	61	15	36	10	51
TMR_00522	tmRNA links to Rfam database...	0.38	0.39	0.38	38	63089	72	15	48	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.30	28	63098	74	15	49	10	69
TMR_00540	tmRNA links to Rfam database...	0.45	0.44	0.47	46	73438	66	11	41	14	58
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.36	34	60632	66	5	55	6	65
TMR_00571	tmRNA links to Rfam database...	0.61	0.60	0.63	59	60632	48	5	30	13	40
TMR_00580	tmRNA links to Rfam database...	0.67	0.65	0.70	65	60633	40	3	25	12	35
TMR_00584	tmRNA links to Rfam database...	0.61	0.60	0.62	58	60981	48	3	33	12	39
TMR_00586	tmRNA links to Rfam database...	0.48	0.49	0.47	48	60973	63	8	46	9	49
TMR_00616	tmRNA links to Rfam database...	0.33	0.34	0.32	34	67054	78	16	57	5	65
TMR_00699	tmRNA links to Rfam database...	0.55	0.53	0.57	54	67067	45	6	34	5	48
TMR_00702	tmRNA links to Rfam database...	0.45	0.44	0.46	44	67066	55	15	36	4	56
TMR_00703	tmRNA links to Rfam database...	0.49	0.49	0.49	49	67428	56	12	39	5	50

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]