CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(20)		CentroidFold
MCC	0.731	>	0.539
Average MCC ± 95% Confidence Intervals	0.737 ± 0.013	>	0.585 ± 0.017
Sensitivity	0.682	>	0.474
Positive Predictive Value	0.785	>	0.614
Total TP	39547	>	27468
Total TN	114641847	<	114647490
Total FP	14815	<	20248
Total FP CONTRA	2161	<	2570
Total FP INCONS	8697	<	14724
Total FP COMP	3957	>	2954
Total FN	18431	<	30510
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(20) and CentroidFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and CentroidFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(20) and CentroidFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and CentroidFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and CentroidFold).

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Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP	39547
Total TN	114641847
Total FP	14815
Total FP CONTRA	2161
Total FP INCONS	8697
Total FP COMP	3957
Total FN	18431

Total Scores
MCC	0.731
Average MCC ± 95% Confidence Intervals	0.737 ± 0.013
Sensitivity	0.682
Positive Predictive Value	0.785
Nr of predictions	285

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2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	18	1	13	4	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	76	57884	14	3	7	4	41
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	57	47515	17	1	13	3	36
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.87	90	59581	19	4	10	5	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	79	73818	28	5	18	5	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	91	80496	18	5	9	4	43
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	67	73839	20	7	7	6	59
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.72	76	104090	33	7	23	3	84
ASE_00022	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.85	88	82924	25	3	13	9	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.65	0.85	82	84569	23	3	12	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	87	70398	23	4	11	8	31
ASE_00037	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	90	59239	16	4	7	5	20
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	72	53546	15	3	7	5	29
ASE_00040	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.92	96	78899	12	2	6	4	37
ASE_00041	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.84	87	57527	19	2	14	3	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.79	83	89995	27	3	19	5	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.90	92	54513	13	4	6	3	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	66	45373	18	3	9	6	23
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	18	5	10	3	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	94	67792	15	4	6	5	25
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.76	78	108708	30	6	19	5	84
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	72	45067	17	5	6	6	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	71	42991	16	3	6	7	12
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.58	46	71551	38	4	30	4	77
ASE_00081	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	70	49693	11	1	6	4	27
ASE_00082	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	64	70421	23	3	12	8	52
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	71	62402	11	4	4	3	39
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	65	53547	20	5	11	4	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.89	67	88335	13	1	7	5	77
ASE_00090	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	73	55530	13	3	5	5	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	65	63467	20	3	11	6	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.91	94	64517	14	3	6	5	26
ASE_00104	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	96	64154	17	4	7	6	23
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	54	64179	33	7	21	5	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	96	73047	14	4	6	4	31
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	65	60648	18	4	9	5	37
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	62765	16	5	8	3	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	14	4	7	3	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	54	39277	16	2	7	7	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	69	40392	16	4	5	7	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	72	53222	11	2	5	4	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	73	62754	12	4	4	4	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	53	39279	15	3	5	7	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	69	50320	18	4	10	4	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	5	19	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	70	48126	13	4	5	4	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	68	48445	7	2	1	4	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	64	40397	14	2	7	5	17
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.83	69	70793	20	7	7	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	93	67059	15	3	6	6	29
ASE_00146	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	90	70775	16	4	7	5	34
ASE_00153	RNaseP_nuc links to Rfam database...	0.40	0.37	0.44	27	57569	41	7	27	7	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	53219	15	4	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	68	52902	10	2	3	5	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	62	48748	24	5	13	6	31
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.90	71	48437	14	3	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	70	58916	14	5	5	4	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	60	60999	19	2	14	3	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	68	59950	17	2	11	4	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	44174	18	5	7	6	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	16	4	8	4	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	63	57553	20	5	9	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	14	4	6	4	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.89	73	61343	12	3	6	3	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	69	54535	14	4	7	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.91	68	73461	12	3	4	5	60
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	82	78902	24	2	17	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.73	0.64	0.82	58	45380	21	3	10	8	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	81	89152	26	2	18	6	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	73	52569	11	3	5	3	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	69	46589	11	2	5	4	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	79	93864	22	2	16	4	69
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	71	56201	13	3	5	5	32
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	47	48455	18	4	10	4	52
ASE_00216	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	69	39268	9	3	0	6	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	69	40391	15	4	6	5	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	93	64517	14	4	6	4	24
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	70	42413	7	2	1	4	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	0	16	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.95	69	38430	8	3	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	67	75381	22	8	10	4	62
ASE_00238	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	63	64179	25	5	14	6	51
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	73	43872	15	4	7	4	14
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.90	95	60969	17	4	7	6	17
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	92	62376	18	4	9	5	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	67	36788	6	1	0	5	15
ASE_00255	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	71	74585	35	5	30	0	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	64	50960	21	5	11	5	33
ASE_00263	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	73	70418	14	3	6	5	47
ASE_00267	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	69	45072	15	4	5	6	19
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	56	72317	21	2	15	4	72
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	22	5	13	4	41
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	61	48128	20	6	10	4	30
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	13	2	6	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	63	51923	21	4	13	4	35
ASE_00281	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44471	12	4	5	3	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	72	77735	12	4	4	4	55
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	71	61694	14	4	7	3	36
ASE_00284	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	58232	11	3	4	4	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	72	68926	12	2	6	4	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	46584	14	5	4	5	20
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	24	4	14	6	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	93	81703	18	5	9	4	45
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	99	114371	15	4	7	4	72
ASE_00296	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	93	91699	19	5	9	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	56	52901	21	4	14	3	42
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	23	3	13	7	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.79	0.76	0.83	85	72668	27	3	15	9	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.92	97	81705	13	2	6	5	41
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.83	83	75366	28	3	14	11	33
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	61	45986	16	3	6	7	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	98	62374	14	4	5	5	17
ASE_00353	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	57891	13	2	5	6	35
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	68	75390	14	2	6	6	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	67	48128	17	3	7	7	24
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	65	51283	18	1	11	6	29
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	16	2	8	6	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.85	68	58573	16	5	7	4	30
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	69	42995	12	2	5	5	17
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	55861	15	3	7	5	33
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.91	70	41828	12	2	5	5	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	69	51926	14	1	7	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	70	44774	10	2	4	4	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	67	56873	18	3	10	5	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.94	74	45977	11	1	4	6	15
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	68	41825	20	3	9	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.90	74	54533	14	3	5	6	31
ASE_00384	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	48436	14	3	6	5	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	50325	12	2	7	3	27
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	19	2	13	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	67	45673	20	3	10	7	22
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42116	13	3	6	4	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.77	62	47814	24	3	16	5	31
ASE_00394	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	70	46892	15	4	5	6	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	68	41538	14	4	6	4	16
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	70	41537	14	4	5	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	72	54535	14	3	5	6	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	18	3	12	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	3	6	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	64	76953	16	4	7	5	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	67	42405	16	4	10	2	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	71	55868	12	1	5	6	36
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42992	16	4	5	7	15
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	66	48748	18	3	11	4	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	60	49371	28	7	17	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.70	57	58229	28	5	20	3	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	62	44472	24	6	11	7	19
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	51	54872	26	2	21	3	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	85	77316	25	4	16	5	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	64	54868	18	4	10	4	39
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	69	46896	12	0	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	81	56855	22	2	15	5	28
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.81	88	76528	24	6	14	4	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	67	46897	12	1	6	5	30
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	68	79300	36	3	30	3	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	14	2	8	4	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	88	64156	21	4	13	4	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.88	92	70771	17	4	9	4	33
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	404	1085151	82	10	36	36	54
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.85	374	1141875	86	17	50	19	100
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.84	390	1170753	91	18	54	19	80
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	381	1107361	95	17	57	21	75
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	390	1172289	85	17	50	18	83
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	390	1181501	85	16	46	23	86
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	383	1108851	87	16	55	16	74
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	388	1178436	81	12	44	25	77
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	388	1135827	85	15	48	22	75
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1201568	90	18	52	20	89
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	381	1152473	90	16	51	23	85
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	381	1179968	89	17	50	22	90
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.86	387	1190748	90	11	50	29	81
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.80	0.81	354	1082220	107	18	64	25	91
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	382	1178424	101	17	57	27	91
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1207780	91	16	52	23	88
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	394	1198472	81	16	44	21	84
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	390	1105881	79	17	40	22	63
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	396	1218684	87	15	46	26	88
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.85	382	1198478	88	15	51	22	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	379	1192296	87	16	49	22	89
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.86	390	1111833	85	15	48	22	65
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	375	1122302	98	14	60	24	87
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	375	1085156	94	14	56	24	71
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	391	1114821	86	15	44	27	66
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.85	379	1110348	89	16	52	21	74
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	371	1129827	85	12	46	27	79
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	377	1179965	98	18	56	24	87
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.86	384	1117811	93	15	50	28	69
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	381	1144895	89	14	51	24	83
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	376	1131317	94	16	51	27	80
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.86	380	1117816	91	17	47	27	78
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	386	1189199	95	13	55	27	90
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.63	267	1620473	212	31	129	52	227
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	240	1762048	265	37	178	50	279
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.63	263	1445430	208	26	131	51	199
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	264	1805500	238	32	154	52	257
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.68	299	1627669	193	22	120	51	203
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.60	262	1988577	231	26	150	55	255
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.51	0.48	0.56	227	1769613	237	20	161	56	250
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.48	0.43	0.53	220	1892069	260	36	160	64	294
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	262	1586434	224	28	147	49	236
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.63	278	1584648	213	32	132	49	223
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	272	1615059	225	29	143	53	231
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	269	1674914	228	29	153	46	238
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.60	0.56	0.64	269	1579331	210	25	128	57	213
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.64	288	1640315	211	20	143	48	218
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.58	0.55	0.60	275	1611455	232	17	163	52	221
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.62	275	1625865	212	23	143	46	223
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	236	1750812	258	28	180	50	279
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.53	0.52	0.54	240	1606084	283	31	173	79	224
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	269	1615064	222	21	149	52	227
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.57	0.53	0.62	263	1665801	210	25	136	49	232
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.85	388	1116310	90	13	54	23	70
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	367	1094034	98	8	51	39	78
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119329	87	4	42	41	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	373	1098469	103	7	54	42	73
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.54	0.51	0.58	250	1665793	234	28	154	52	241
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.61	263	1640333	241	27	143	71	220
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.59	254	1636715	232	18	158	56	227
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.53	0.49	0.57	239	1638533	247	16	167	64	247
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.78	0.76	0.80	306	945618	127	7	69	51	98
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.85	357	1137365	108	8	56	44	90
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	301	1152552	149	5	63	81	93
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.80	0.78	0.82	366	1117816	101	14	64	23	104
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.85	389	1135822	85	16	51	18	75
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.59	0.56	0.63	283	1606076	220	25	144	51	220
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.48	0.56	245	1593566	240	31	163	46	261
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.60	0.55	0.67	283	1693295	193	17	125	51	232
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.84	355	1073423	101	6	61	34	140
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	2	0	0	2	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	363	1500344	118	10	61	47	172
PDB_01020	Purine links to Rfam database...	0.88	0.78	1.00	18	2260	3	0	0	3	5
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.74	0.65	0.83	357	1471042	115	5	66	44	190
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.75	0.66	0.85	373	1606088	99	8	59	32	189
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	366	1433533	107	4	68	35	174
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.85	378	1204681	101	9	60	32	149
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.73	0.84	358	1117834	110	9	59	42	133
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.82	0.90	91	101374	19	3	7	9	20
RFA_00601	Telomerase-vert links to Rfam database...	0.80	0.74	0.88	84	99139	25	3	9	13	30
RFA_00602	Telomerase-vert links to Rfam database...	0.79	0.72	0.87	84	101378	22	2	11	9	32
TMR_00017	tmRNA links to Rfam database...	0.74	0.61	0.90	62	67092	15	2	5	8	40
TMR_00018	tmRNA links to Rfam database...	0.60	0.53	0.67	49	64547	31	9	15	7	43
TMR_00038	tmRNA links to Rfam database...	0.61	0.54	0.70	59	71169	31	5	20	6	51
TMR_00042	tmRNA links to Rfam database...	0.63	0.53	0.74	52	62765	19	5	13	1	46
TMR_00046	tmRNA links to Rfam database...	0.42	0.38	0.47	36	62759	42	7	33	2	60
TMR_00048	tmRNA links to Rfam database...	0.61	0.54	0.69	51	64906	30	8	15	7	44
TMR_00080	tmRNA links to Rfam database...	0.66	0.60	0.73	58	70420	26	10	12	4	38
TMR_00082	tmRNA links to Rfam database...	0.59	0.49	0.70	47	67829	27	7	13	7	49
TMR_00123	tmRNA links to Rfam database...	0.68	0.54	0.85	55	66365	18	3	7	8	46
TMR_00137	tmRNA links to Rfam database...	0.68	0.63	0.74	56	60999	29	8	12	9	33
TMR_00142	tmRNA links to Rfam database...	0.46	0.42	0.51	43	70792	44	12	29	3	59
TMR_00207	tmRNA links to Rfam database...	0.66	0.52	0.84	54	72326	22	2	8	12	49
TMR_00257	tmRNA links to Rfam database...	0.73	0.61	0.87	60	67092	18	4	5	9	38
TMR_00271	tmRNA links to Rfam database...	0.58	0.49	0.69	45	64196	23	9	11	3	46
TMR_00332	tmRNA links to Rfam database...	0.71	0.61	0.83	60	67089	21	3	9	9	39
TMR_00366	tmRNA links to Rfam database...	0.48	0.45	0.52	45	67810	45	10	31	4	55
TMR_00378	tmRNA links to Rfam database...	0.45	0.41	0.48	40	67813	48	10	33	5	57
TMR_00399	tmRNA links to Rfam database...	0.66	0.62	0.71	58	64898	36	6	18	12	36
TMR_00404	tmRNA links to Rfam database...	0.52	0.46	0.60	42	67458	32	11	17	4	50
TMR_00427	tmRNA links to Rfam database...	0.60	0.49	0.74	48	67463	20	9	8	3	49
TMR_00443	tmRNA links to Rfam database...	0.81	0.71	0.93	74	67081	13	2	4	7	30
TMR_00451	tmRNA links to Rfam database...	0.59	0.54	0.64	48	63471	38	14	13	11	41
TMR_00458	tmRNA links to Rfam database...	0.69	0.61	0.77	57	63472	24	10	7	7	36
TMR_00469	tmRNA links to Rfam database...	0.73	0.64	0.84	64	64544	18	7	5	6	36
TMR_00472	tmRNA links to Rfam database...	0.67	0.61	0.73	59	64539	31	11	11	9	38
TMR_00519	tmRNA links to Rfam database...	0.63	0.56	0.72	53	63116	33	8	13	12	42
TMR_00520	tmRNA links to Rfam database...	0.65	0.58	0.74	57	63113	28	3	17	8	42
TMR_00522	tmRNA links to Rfam database...	0.60	0.53	0.68	51	63115	31	7	17	7	46
TMR_00528	tmRNA links to Rfam database...	0.50	0.45	0.56	44	63111	40	12	23	5	53
TMR_00540	tmRNA links to Rfam database...	0.66	0.60	0.73	62	73451	28	7	16	5	42
TMR_00568	tmRNA links to Rfam database...	0.71	0.66	0.76	65	60641	29	2	18	9	34
TMR_00571	tmRNA links to Rfam database...	0.74	0.69	0.79	68	60640	27	2	16	9	31
TMR_00580	tmRNA links to Rfam database...	0.73	0.67	0.80	67	60642	26	5	12	9	33
TMR_00584	tmRNA links to Rfam database...	0.78	0.70	0.87	68	60997	19	2	8	9	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.68	0.81	66	60994	23	5	10	8	31
TMR_00616	tmRNA links to Rfam database...	0.69	0.62	0.76	61	67081	25	9	10	6	38
TMR_00699	tmRNA links to Rfam database...	0.70	0.56	0.88	57	67096	13	1	7	5	45
TMR_00702	tmRNA links to Rfam database...	0.61	0.50	0.75	50	67094	24	4	13	7	50
TMR_00703	tmRNA links to Rfam database...	0.71	0.60	0.84	59	67458	17	2	9	6	40

^top

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	27468
Total TN	114647490
Total FP	20248
Total FP CONTRA	2570
Total FP INCONS	14724
Total FP COMP	2954
Total FN	30510

Total Scores
MCC	0.539
Average MCC ± 95% Confidence Intervals	0.585 ± 0.017
Sensitivity	0.474
Positive Predictive Value	0.614
Nr of predictions	285

^top

2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	61	47812	22	9	13	0	36
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	63	57892	15	0	15	0	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	45	47505	39	6	30	3	48
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	51	59612	25	0	22	3	59
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.44	0.68	54	73840	32	1	25	6	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.74	78	80495	29	0	28	1	56
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	75	73824	22	1	20	1	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	96	104077	29	2	21	6	64
ASE_00022	RNaseP_bact_b links to Rfam database...	0.32	0.27	0.38	34	82939	60	0	55	5	90
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.65	0.76	82	84558	34	4	22	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.50	38	70424	41	2	36	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	38	59283	19	0	19	0	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.65	47	53556	27	4	21	2	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	18	78895	94	5	85	4	115
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.86	57	57564	12	0	9	3	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	77	89983	43	1	39	3	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	70	54518	32	3	24	5	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	51	45385	25	1	14	10	38
ASE_00068	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	45	37623	7	0	7	0	40
ASE_00074	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	58	67789	51	4	45	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	109	108684	24	2	16	6	53
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.34	0.69	29	45108	14	3	10	1	57
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	49	43015	11	0	7	4	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	61	71549	25	1	20	4	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	56	49688	27	5	21	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	80	70412	18	1	7	10	36
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	70	62399	17	0	12	5	40
ASE_00084	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	65	53554	11	2	7	2	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	101	88287	23	2	20	1	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	60	55517	39	4	30	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	84	63455	10	1	6	3	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	56	64519	45	5	40	0	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.84	81	64164	17	2	14	1	38
ASE_00105	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.65	53	64180	31	4	24	3	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	87	73052	15	1	13	1	40
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.75	69	54523	31	4	19	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	60	60646	21	2	18	1	42
ASE_00119	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	78	62734	26	2	21	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	44	38435	28	1	23	4	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.94	58	39278	7	1	3	3	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	46	40400	31	3	21	7	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	60	53232	12	1	8	3	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	71	62748	19	0	16	3	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	54	39280	12	1	5	6	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.56	36	50339	28	2	26	0	59
ASE_00135	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	56	63110	31	1	23	7	53
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.70	49	48135	30	1	20	9	43
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	73	48431	13	3	9	1	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.77	40	40418	13	4	8	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	77	70786	14	3	10	1	48
ASE_00142	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	70	67058	37	4	29	4	52
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	59	70786	32	6	25	1	65
ASE_00153	RNaseP_nuc links to Rfam database...	0.46	0.42	0.51	31	57569	56	5	25	26	42
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.36	29	53221	60	4	47	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	70	52895	11	1	9	1	31
ASE_00170	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.78	57	48755	16	3	13	0	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	64	48436	16	3	13	0	30
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	76	58911	10	2	7	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	60	60990	26	6	19	1	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	59942	55	1	52	2	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	50	44189	15	3	11	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	62	51292	11	0	6	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	49	57541	41	2	38	1	57
ASE_00182	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	86	84144	25	1	24	0	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	77	61325	32	0	23	9	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	78	54519	20	3	15	2	24
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	82	73436	21	1	17	3	46
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	28	2	18	8	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.92	47	45400	8	0	4	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.73	84	89138	37	2	29	6	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	64	52567	20	4	15	1	38
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	68	46583	18	4	10	4	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.79	93	93844	29	2	22	5	55
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	78	56187	20	3	12	5	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.63	49	48438	30	2	27	1	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	47	39264	29	7	22	0	35
ASE_00217	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.55	34	40408	29	2	26	1	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	67	64542	14	0	11	3	50
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	56	46901	16	7	7	2	30
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	58	42421	7	1	6	0	29
ASE_00231	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	47818	9	1	7	1	27
ASE_00232	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	54	38426	23	10	13	0	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	61	75378	30	1	26	3	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.77	60	64183	19	0	18	1	54
ASE_00241	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	55	43896	6	0	5	1	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	74	60985	19	4	12	3	38
ASE_00248	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	62401	17	1	15	1	50
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	60	36787	15	4	5	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	77	74586	29	3	25	1	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	71	50959	12	0	10	2	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	65	70389	46	3	43	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	44	45087	23	1	18	4	44
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	86	72278	27	3	23	1	42
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	43	55535	33	3	30	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	51	48126	28	5	23	0	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	53219	32	3	29	0	51
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	54	51933	18	2	14	2	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44484	18	1	11	6	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	58	77710	47	8	39	0	69
ASE_00283	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	67	61688	22	4	17	1	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	64	58222	27	5	20	2	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.88	92	68902	17	3	9	5	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	59	46594	16	1	11	4	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	62	54865	20	1	18	1	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	72	81706	34	1	31	2	66
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	111	114344	28	1	25	2	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.63	76	91686	45	4	40	1	69
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	66	52890	20	3	16	1	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	31	67435	65	7	55	3	82
ASE_00318	RNaseP_bact_b links to Rfam database...	0.58	0.51	0.67	60	80111	33	9	20	4	58
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	68	72695	13	1	7	5	44
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	72	81687	53	2	49	2	66
ASE_00335	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.72	63	75379	29	2	22	5	53
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	45984	39	4	31	4	48
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	74	62388	20	1	18	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	77	57881	14	1	11	2	30
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	63	75366	40	4	33	3	64
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	53	48127	27	1	24	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	59	51294	13	1	6	6	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	68	54204	17	0	13	4	37
ASE_00366	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.51	39	58577	37	5	32	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42993	43	6	32	5	46
ASE_00369	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	67	55865	13	1	12	0	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	56	41829	22	2	18	2	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51917	28	4	18	6	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	63	44770	17	2	15	0	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	64	56866	25	4	19	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	75	57542	19	3	10	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	50	45982	30	3	21	6	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.65	45	41836	27	5	19	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.84	73	54528	17	1	13	3	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	67	48435	18	1	13	4	25
ASE_00386	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	63	50317	29	1	22	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	66	55860	20	1	18	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.82	54	45687	13	0	12	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	47	42117	32	7	24	1	38
ASE_00393	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	61	47821	19	1	12	6	32
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	74	46885	14	3	9	2	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	56	41544	18	1	15	2	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	45	41543	29	2	26	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	73	54524	19	3	15	1	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	61	55862	25	1	21	3	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	62	57891	18	1	16	1	44
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	76	76920	33	4	28	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	53	42423	11	1	9	1	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.59	40	55877	31	0	28	3	67
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	44	43012	16	1	14	1	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	68	48742	21	5	13	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.65	41	49392	24	5	17	2	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	59	58236	19	1	15	3	46
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	39	44492	21	4	16	1	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.66	50	54870	31	2	24	5	53
ASE_00416	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	71	77317	38	4	29	5	56
ASE_00419	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	77	54857	13	8	4	1	26
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	62	46886	28	5	18	5	32
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.71	66	56860	29	5	22	2	43
ASE_00428	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	77	76539	23	2	18	3	48
ASE_00430	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	65	46886	27	4	16	7	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.64	54	79316	32	1	30	1	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.94	83	64173	9	0	5	4	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.57	41	64189	36	6	25	5	71
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	86	70771	20	1	18	1	39
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.79	0.76	0.83	347	1085183	108	8	63	37	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.66	0.71	312	1141875	159	19	110	30	162
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.75	230	1170907	91	8	70	13	240
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.64	223	1107466	140	16	111	13	233
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	241	1172408	111	9	88	14	232
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.64	0.57	0.72	269	1181581	110	23	80	7	207
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.63	225	1108945	147	19	116	12	232
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.63	228	1178519	155	15	118	22	237
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.70	226	1135957	106	11	84	11	237
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.70	268	1201642	136	16	99	21	208
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.47	0.66	217	1152591	126	17	96	13	249
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.42	0.62	200	1180095	129	14	107	8	271
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	247	1190845	120	6	98	16	221
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.39	139	1082299	226	23	195	8	306
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	213	1178522	162	17	128	17	260
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	247	1207869	131	18	101	12	228
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	250	1198552	140	19	105	16	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.65	221	1105989	128	13	105	10	232
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.66	0.61	0.71	296	1218724	154	20	101	33	188
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.57	0.50	0.66	237	1198568	130	20	101	9	241
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.35	0.57	165	1192449	145	20	106	19	303
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.67	0.57	0.79	260	1111955	83	11	60	12	195
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.41	0.55	190	1122405	171	26	130	15	272
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.43	0.60	194	1085280	142	14	113	15	252
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.70	249	1114913	130	13	96	21	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.64	165	1110536	105	15	79	11	288
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.49	0.41	0.57	186	1129931	157	13	126	18	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.64	209	1180088	132	19	100	13	255
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.67	192	1117973	105	9	86	10	261
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	265	1144950	146	18	108	20	199
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.65	162	1131511	101	11	76	14	294
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	268	1117909	98	16	67	15	190
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.68	260	1189270	143	18	105	20	216
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	109	1620517	295	50	224	21	385
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.48	0.39	0.58	203	1762152	211	28	120	63	316
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.29	0.26	0.32	120	1445480	309	50	200	59	342
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	178	1805524	303	44	204	55	343
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.48	0.67	240	1627752	163	19	99	45	262
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.30	0.25	0.36	131	1988654	302	33	197	72	386
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	104	1769656	299	47	214	38	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.24	0.36	125	1892139	288	29	192	67	389
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	186	1586456	267	40	189	38	312
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.38	0.42	189	1584645	289	48	208	33	312
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.37	0.31	0.44	157	1615148	235	27	171	37	346
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.45	200	1674917	285	39	209	37	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.34	0.31	0.38	150	1579355	289	44	204	41	332
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	167	1640375	256	43	181	32	339
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.47	0.39	0.56	194	1611562	196	29	125	42	302
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.48	0.41	0.58	202	1625955	204	26	123	55	296
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.32	0.30	0.34	156	1750800	337	47	253	37	359
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.29	0.34	135	1606132	324	52	209	63	329
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.42	0.35	0.49	173	1615153	226	27	150	49	323
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.42	0.36	0.48	180	1665851	239	34	160	45	315
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	292	1116394	100	14	65	21	166
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.34	0.28	0.42	125	1094162	188	16	157	15	320
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.37	0.32	0.43	143	1119420	207	36	157	14	309
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	261	1098541	124	19	82	23	185
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.40	0.37	0.45	180	1665823	270	42	180	48	311
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.40	164	1640353	298	41	208	49	319
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.42	134	1636828	232	34	149	49	347
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	167	1638559	278	50	179	49	319
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.38	0.30	0.50	120	945758	137	16	106	15	284
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.40	0.65	179	1137510	120	5	92	23	268
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.28	0.44	110	1152672	173	15	124	34	284
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.59	0.56	0.62	265	1117830	190	14	151	25	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	119	15	86	18	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	185	1606114	268	39	190	39	318
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.46	0.41	0.52	206	1593608	228	40	151	37	300
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	192	1693289	291	56	183	52	323
PDB_00571	tRNA links to Rfam database...	0.77	0.64	0.94	16	3304	1	1	0	0	9
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.61	244	1073448	180	13	140	27	251
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	264	1500316	234	15	183	36	271
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.39	0.55	215	1471076	203	25	154	24	332
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.61	297	1606045	214	20	166	28	265
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	307	1433517	177	8	139	30	233
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.42	0.59	220	1204752	177	19	137	21	307
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	229	1117849	211	14	168	29	262
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.70	0.76	78	101372	49	7	18	24	33
RFA_00601	Telomerase-vert links to Rfam database...	0.34	0.36	0.32	41	99105	97	33	56	8	73
RFA_00602	Telomerase-vert links to Rfam database...	0.67	0.71	0.64	82	101347	54	22	24	8	34
TMR_00017	tmRNA links to Rfam database...	0.55	0.41	0.74	42	67104	19	0	15	4	60
TMR_00018	tmRNA links to Rfam database...	0.45	0.38	0.52	35	64553	36	10	22	4	57
TMR_00038	tmRNA links to Rfam database...	0.27	0.25	0.28	28	71153	78	14	58	6	82
TMR_00042	tmRNA links to Rfam database...	0.38	0.34	0.42	33	62757	48	6	39	3	65
TMR_00046	tmRNA links to Rfam database...	0.60	0.56	0.64	54	62750	37	4	27	6	42
TMR_00048	tmRNA links to Rfam database...	0.48	0.46	0.49	44	64890	55	8	38	9	51
TMR_00080	tmRNA links to Rfam database...	0.42	0.36	0.49	35	70428	37	7	30	0	61
TMR_00082	tmRNA links to Rfam database...	0.29	0.26	0.32	25	67818	53	9	44	0	71
TMR_00123	tmRNA links to Rfam database...	0.56	0.50	0.63	50	66350	35	3	27	5	51
TMR_00137	tmRNA links to Rfam database...	0.34	0.27	0.43	24	61019	40	3	29	8	65
TMR_00142	tmRNA links to Rfam database...	0.61	0.58	0.64	59	70784	46	8	25	13	43
TMR_00207	tmRNA links to Rfam database...	0.46	0.38	0.55	39	72319	37	4	28	5	64
TMR_00257	tmRNA links to Rfam database...	0.26	0.20	0.33	20	67101	45	1	39	5	78
TMR_00271	tmRNA links to Rfam database...	0.62	0.57	0.68	52	64184	36	6	19	11	39
TMR_00332	tmRNA links to Rfam database...	0.43	0.35	0.53	35	67095	36	1	30	5	64
TMR_00366	tmRNA links to Rfam database...	0.52	0.45	0.59	45	67820	42	11	20	11	55
TMR_00378	tmRNA links to Rfam database...	0.36	0.30	0.44	29	67830	47	8	29	10	68
TMR_00399	tmRNA links to Rfam database...	0.41	0.35	0.47	33	64910	43	11	26	6	61
TMR_00404	tmRNA links to Rfam database...	0.60	0.58	0.62	53	67443	49	6	26	17	39
TMR_00427	tmRNA links to Rfam database...	0.44	0.34	0.56	33	67469	31	8	18	5	64
TMR_00443	tmRNA links to Rfam database...	0.62	0.50	0.76	52	67093	23	6	10	7	52
TMR_00451	tmRNA links to Rfam database...	0.23	0.19	0.27	17	63483	50	12	34	4	72
TMR_00458	tmRNA links to Rfam database...	0.35	0.29	0.42	27	63481	45	8	30	7	66
TMR_00469	tmRNA links to Rfam database...	0.57	0.52	0.63	52	64537	35	10	21	4	48
TMR_00472	tmRNA links to Rfam database...	0.52	0.42	0.63	41	64555	29	6	18	5	56
TMR_00519	tmRNA links to Rfam database...	0.40	0.31	0.54	29	63136	38	5	20	13	66
TMR_00520	tmRNA links to Rfam database...	0.50	0.42	0.60	42	63120	38	4	24	10	57
TMR_00522	tmRNA links to Rfam database...	0.41	0.35	0.47	34	63118	47	8	30	9	63
TMR_00528	tmRNA links to Rfam database...	0.41	0.36	0.46	35	63114	51	12	29	10	62
TMR_00540	tmRNA links to Rfam database...	0.37	0.34	0.40	35	73449	60	7	45	8	69
TMR_00568	tmRNA links to Rfam database...	0.53	0.49	0.56	49	60639	44	4	34	6	50
TMR_00571	tmRNA links to Rfam database...	0.61	0.53	0.70	52	60652	30	6	16	8	47
TMR_00580	tmRNA links to Rfam database...	0.44	0.41	0.47	41	60638	50	10	37	3	59
TMR_00584	tmRNA links to Rfam database...	0.67	0.61	0.75	59	60996	30	1	19	10	38
TMR_00586	tmRNA links to Rfam database...	0.42	0.41	0.43	40	60981	59	10	44	5	57
TMR_00616	tmRNA links to Rfam database...	0.45	0.41	0.49	41	67078	50	9	33	8	58
TMR_00699	tmRNA links to Rfam database...	0.54	0.46	0.63	47	67086	33	3	25	5	55
TMR_00702	tmRNA links to Rfam database...	0.35	0.27	0.46	27	67102	39	5	27	7	73
TMR_00703	tmRNA links to Rfam database...	0.56	0.48	0.64	48	67453	34	5	22	7	51

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

Performance of CentroidFold - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]