CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(20)		UNAFold
MCC	0.730	>	0.459
Average MCC ± 95% Confidence Intervals	0.736 ± 0.013	>	0.503 ± 0.019
Sensitivity	0.681	>	0.454
Positive Predictive Value	0.783	>	0.465
Total TP	39824	>	26557
Total TN	116768373	>	116762035
Total FP	15028	<	33958
Total FP CONTRA	2186	<	4801
Total FP INCONS	8822	<	25812
Total FP COMP	4020	>	3345
Total FN	18688	<	31955
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(20) and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(20) and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and UNAFold).

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Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP	39824
Total TN	116768373
Total FP	15028
Total FP CONTRA	2186
Total FP INCONS	8822
Total FP COMP	4020
Total FN	18688

Total Scores
MCC	0.730
Average MCC ± 95% Confidence Intervals	0.736 ± 0.013
Sensitivity	0.681
Positive Predictive Value	0.783
Nr of predictions	286

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2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	18	1	13	4	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	76	57884	14	3	7	4	41
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	57	47515	17	1	13	3	36
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.87	90	59581	19	4	10	5	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	79	73818	28	5	18	5	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	91	80496	18	5	9	4	43
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	67	73839	20	7	7	6	59
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.72	76	104090	33	7	23	3	84
ASE_00022	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.85	88	82924	25	3	13	9	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.65	0.85	82	84569	23	3	12	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	87	70398	23	4	11	8	31
ASE_00037	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	90	59239	16	4	7	5	20
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	72	53546	15	3	7	5	29
ASE_00040	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.92	96	78899	12	2	6	4	37
ASE_00041	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.84	87	57527	19	2	14	3	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.79	83	89995	27	3	19	5	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.90	92	54513	13	4	6	3	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	66	45373	18	3	9	6	23
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	18	5	10	3	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	94	67792	15	4	6	5	25
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.76	78	108708	30	6	19	5	84
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	72	45067	17	5	6	6	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	71	42991	16	3	6	7	12
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.58	46	71551	38	4	30	4	77
ASE_00081	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	70	49693	11	1	6	4	27
ASE_00082	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	64	70421	23	3	12	8	52
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	71	62402	11	4	4	3	39
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	65	53547	20	5	11	4	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.89	67	88335	13	1	7	5	77
ASE_00090	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	73	55530	13	3	5	5	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	65	63467	20	3	11	6	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.91	94	64517	14	3	6	5	26
ASE_00104	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	96	64154	17	4	7	6	23
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	54	64179	33	7	21	5	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	96	73047	14	4	6	4	31
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	65	60648	18	4	9	5	37
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	62765	16	5	8	3	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	14	4	7	3	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	54	39277	16	2	7	7	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	69	40392	16	4	5	7	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	72	53222	11	2	5	4	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	73	62754	12	4	4	4	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	53	39279	15	3	5	7	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	69	50320	18	4	10	4	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	5	19	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	70	48126	13	4	5	4	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	68	48445	7	2	1	4	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	64	40397	14	2	7	5	17
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.83	69	70793	20	7	7	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	93	67059	15	3	6	6	29
ASE_00146	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	90	70775	16	4	7	5	34
ASE_00153	RNaseP_nuc links to Rfam database...	0.40	0.37	0.44	27	57569	41	7	27	7	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	53219	15	4	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	68	52902	10	2	3	5	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	62	48748	24	5	13	6	31
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.90	71	48437	14	3	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	70	58916	14	5	5	4	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	60	60999	19	2	14	3	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	68	59950	17	2	11	4	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	44174	18	5	7	6	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	16	4	8	4	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	63	57553	20	5	9	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	14	4	6	4	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.89	73	61343	12	3	6	3	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	69	54535	14	4	7	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.91	68	73461	12	3	4	5	60
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	82	78902	24	2	17	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.73	0.64	0.82	58	45380	21	3	10	8	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	81	89152	26	2	18	6	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	73	52569	11	3	5	3	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	69	46589	11	2	5	4	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	79	93864	22	2	16	4	69
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	71	56201	13	3	5	5	32
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	47	48455	18	4	10	4	52
ASE_00216	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	69	39268	9	3	0	6	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	69	40391	15	4	6	5	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	93	64517	14	4	6	4	24
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	70	42413	7	2	1	4	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	0	16	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.95	69	38430	8	3	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	67	75381	22	8	10	4	62
ASE_00238	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	63	64179	25	5	14	6	51
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	73	43872	15	4	7	4	14
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.90	95	60969	17	4	7	6	17
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	92	62376	18	4	9	5	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	67	36788	6	1	0	5	15
ASE_00255	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	71	74585	35	5	30	0	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	64	50960	21	5	11	5	33
ASE_00263	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	73	70418	14	3	6	5	47
ASE_00267	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	69	45072	15	4	5	6	19
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	56	72317	21	2	15	4	72
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	22	5	13	4	41
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	61	48128	20	6	10	4	30
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	13	2	6	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	63	51923	21	4	13	4	35
ASE_00281	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44471	12	4	5	3	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	72	77735	12	4	4	4	55
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	71	61694	14	4	7	3	36
ASE_00284	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	58232	11	3	4	4	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	72	68926	12	2	6	4	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	46584	14	5	4	5	20
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	24	4	14	6	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	93	81703	18	5	9	4	45
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	99	114371	15	4	7	4	72
ASE_00296	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	93	91699	19	5	9	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	56	52901	21	4	14	3	42
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	23	3	13	7	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.79	0.76	0.83	85	72668	27	3	15	9	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.92	97	81705	13	2	6	5	41
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.83	83	75366	28	3	14	11	33
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	61	45986	16	3	6	7	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	98	62374	14	4	5	5	17
ASE_00353	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	57891	13	2	5	6	35
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	68	75390	14	2	6	6	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	67	48128	17	3	7	7	24
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	65	51283	18	1	11	6	29
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	16	2	8	6	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.85	68	58573	16	5	7	4	30
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	69	42995	12	2	5	5	17
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	55861	15	3	7	5	33
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.91	70	41828	12	2	5	5	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	69	51926	14	1	7	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	70	44774	10	2	4	4	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	67	56873	18	3	10	5	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.94	74	45977	11	1	4	6	15
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	68	41825	20	3	9	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.90	74	54533	14	3	5	6	31
ASE_00384	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	48436	14	3	6	5	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	50325	12	2	7	3	27
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	19	2	13	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	67	45673	20	3	10	7	22
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42116	13	3	6	4	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.77	62	47814	24	3	16	5	31
ASE_00394	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	70	46892	15	4	5	6	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	68	41538	14	4	6	4	16
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	70	41537	14	4	5	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	72	54535	14	3	5	6	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	18	3	12	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	3	6	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	64	76953	16	4	7	5	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	67	42405	16	4	10	2	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	71	55868	12	1	5	6	36
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42992	16	4	5	7	15
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	66	48748	18	3	11	4	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	60	49371	28	7	17	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.70	57	58229	28	5	20	3	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	62	44472	24	6	11	7	19
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	51	54872	26	2	21	3	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	85	77316	25	4	16	5	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	64	54868	18	4	10	4	39
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	69	46896	12	0	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	81	56855	22	2	15	5	28
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.81	88	76528	24	6	14	4	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	67	46897	12	1	6	5	30
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	68	79300	36	3	30	3	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	14	2	8	4	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	88	64156	21	4	13	4	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.88	92	70771	17	4	9	4	33
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	404	1085151	82	10	36	36	54
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.85	374	1141875	86	17	50	19	100
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.84	390	1170753	91	18	54	19	80
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	381	1107361	95	17	57	21	75
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	390	1172289	85	17	50	18	83
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	390	1181501	85	16	46	23	86
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	383	1108851	87	16	55	16	74
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	388	1178436	81	12	44	25	77
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	388	1135827	85	15	48	22	75
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1201568	90	18	52	20	89
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	381	1152473	90	16	51	23	85
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	381	1179968	89	17	50	22	90
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.86	387	1190748	90	11	50	29	81
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.80	0.81	354	1082220	107	18	64	25	91
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	382	1178424	101	17	57	27	91
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1207780	91	16	52	23	88
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	394	1198472	81	16	44	21	84
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	390	1105881	79	17	40	22	63
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	396	1218684	87	15	46	26	88
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.85	382	1198478	88	15	51	22	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	379	1192296	87	16	49	22	89
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.86	390	1111833	85	15	48	22	65
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	375	1122302	98	14	60	24	87
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	375	1085156	94	14	56	24	71
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	391	1114821	86	15	44	27	66
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.85	379	1110348	89	16	52	21	74
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	371	1129827	85	12	46	27	79
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	377	1179965	98	18	56	24	87
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.86	384	1117811	93	15	50	28	69
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	381	1144895	89	14	51	24	83
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	376	1131317	94	16	51	27	80
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.86	380	1117816	91	17	47	27	78
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	386	1189199	95	13	55	27	90
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.63	267	1620473	212	31	129	52	227
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	240	1762048	265	37	178	50	279
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.63	263	1445430	208	26	131	51	199
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	264	1805500	238	32	154	52	257
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.68	299	1627669	193	22	120	51	203
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.60	262	1988577	231	26	150	55	255
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.51	0.48	0.56	227	1769613	237	20	161	56	250
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.48	0.43	0.53	220	1892069	260	36	160	64	294
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	262	1586434	224	28	147	49	236
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.63	278	1584648	213	32	132	49	223
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	272	1615059	225	29	143	53	231
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	269	1674914	228	29	153	46	238
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.60	0.56	0.64	269	1579331	210	25	128	57	213
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.64	288	1640315	211	20	143	48	218
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.58	0.55	0.60	275	1611455	232	17	163	52	221
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.62	275	1625865	212	23	143	46	223
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.58	0.52	0.65	277	2126526	213	25	125	63	257
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	236	1750812	258	28	180	50	279
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.53	0.52	0.54	240	1606084	283	31	173	79	224
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	269	1615064	222	21	149	52	227
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.57	0.53	0.62	263	1665801	210	25	136	49	232
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.85	388	1116310	90	13	54	23	70
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	367	1094034	98	8	51	39	78
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119329	87	4	42	41	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	373	1098469	103	7	54	42	73
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.54	0.51	0.58	250	1665793	234	28	154	52	241
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.61	263	1640333	241	27	143	71	220
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.59	254	1636715	232	18	158	56	227
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.53	0.49	0.57	239	1638533	247	16	167	64	247
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.78	0.76	0.80	306	945618	127	7	69	51	98
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.85	357	1137365	108	8	56	44	90
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	301	1152552	149	5	63	81	93
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.80	0.78	0.82	366	1117816	101	14	64	23	104
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.85	389	1135822	85	16	51	18	75
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.59	0.56	0.63	283	1606076	220	25	144	51	220
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.48	0.56	245	1593566	240	31	163	46	261
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.60	0.55	0.67	283	1693295	193	17	125	51	232
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.84	355	1073423	101	6	61	34	140
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	2	0	0	2	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	363	1500344	118	10	61	47	172
PDB_01020	Purine links to Rfam database...	0.88	0.78	1.00	18	2260	3	0	0	3	5
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.74	0.65	0.83	357	1471042	115	5	66	44	190
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.75	0.66	0.85	373	1606088	99	8	59	32	189
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	366	1433533	107	4	68	35	174
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.85	378	1204681	101	9	60	32	149
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.73	0.84	358	1117834	110	9	59	42	133
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.82	0.90	91	101374	19	3	7	9	20
RFA_00601	Telomerase-vert links to Rfam database...	0.80	0.74	0.88	84	99139	25	3	9	13	30
RFA_00602	Telomerase-vert links to Rfam database...	0.79	0.72	0.87	84	101378	22	2	11	9	32
TMR_00017	tmRNA links to Rfam database...	0.74	0.61	0.90	62	67092	15	2	5	8	40
TMR_00018	tmRNA links to Rfam database...	0.60	0.53	0.67	49	64547	31	9	15	7	43
TMR_00038	tmRNA links to Rfam database...	0.61	0.54	0.70	59	71169	31	5	20	6	51
TMR_00042	tmRNA links to Rfam database...	0.63	0.53	0.74	52	62765	19	5	13	1	46
TMR_00046	tmRNA links to Rfam database...	0.42	0.38	0.47	36	62759	42	7	33	2	60
TMR_00048	tmRNA links to Rfam database...	0.61	0.54	0.69	51	64906	30	8	15	7	44
TMR_00080	tmRNA links to Rfam database...	0.66	0.60	0.73	58	70420	26	10	12	4	38
TMR_00082	tmRNA links to Rfam database...	0.59	0.49	0.70	47	67829	27	7	13	7	49
TMR_00123	tmRNA links to Rfam database...	0.68	0.54	0.85	55	66365	18	3	7	8	46
TMR_00137	tmRNA links to Rfam database...	0.68	0.63	0.74	56	60999	29	8	12	9	33
TMR_00142	tmRNA links to Rfam database...	0.46	0.42	0.51	43	70792	44	12	29	3	59
TMR_00207	tmRNA links to Rfam database...	0.66	0.52	0.84	54	72326	22	2	8	12	49
TMR_00257	tmRNA links to Rfam database...	0.73	0.61	0.87	60	67092	18	4	5	9	38
TMR_00271	tmRNA links to Rfam database...	0.58	0.49	0.69	45	64196	23	9	11	3	46
TMR_00332	tmRNA links to Rfam database...	0.71	0.61	0.83	60	67089	21	3	9	9	39
TMR_00366	tmRNA links to Rfam database...	0.48	0.45	0.52	45	67810	45	10	31	4	55
TMR_00378	tmRNA links to Rfam database...	0.45	0.41	0.48	40	67813	48	10	33	5	57
TMR_00399	tmRNA links to Rfam database...	0.66	0.62	0.71	58	64898	36	6	18	12	36
TMR_00404	tmRNA links to Rfam database...	0.52	0.46	0.60	42	67458	32	11	17	4	50
TMR_00427	tmRNA links to Rfam database...	0.60	0.49	0.74	48	67463	20	9	8	3	49
TMR_00443	tmRNA links to Rfam database...	0.81	0.71	0.93	74	67081	13	2	4	7	30
TMR_00451	tmRNA links to Rfam database...	0.59	0.54	0.64	48	63471	38	14	13	11	41
TMR_00458	tmRNA links to Rfam database...	0.69	0.61	0.77	57	63472	24	10	7	7	36
TMR_00469	tmRNA links to Rfam database...	0.73	0.64	0.84	64	64544	18	7	5	6	36
TMR_00472	tmRNA links to Rfam database...	0.67	0.61	0.73	59	64539	31	11	11	9	38
TMR_00519	tmRNA links to Rfam database...	0.63	0.56	0.72	53	63116	33	8	13	12	42
TMR_00520	tmRNA links to Rfam database...	0.65	0.58	0.74	57	63113	28	3	17	8	42
TMR_00522	tmRNA links to Rfam database...	0.60	0.53	0.68	51	63115	31	7	17	7	46
TMR_00528	tmRNA links to Rfam database...	0.50	0.45	0.56	44	63111	40	12	23	5	53
TMR_00540	tmRNA links to Rfam database...	0.66	0.60	0.73	62	73451	28	7	16	5	42
TMR_00568	tmRNA links to Rfam database...	0.71	0.66	0.76	65	60641	29	2	18	9	34
TMR_00571	tmRNA links to Rfam database...	0.74	0.69	0.79	68	60640	27	2	16	9	31
TMR_00580	tmRNA links to Rfam database...	0.73	0.67	0.80	67	60642	26	5	12	9	33
TMR_00584	tmRNA links to Rfam database...	0.78	0.70	0.87	68	60997	19	2	8	9	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.68	0.81	66	60994	23	5	10	8	31
TMR_00616	tmRNA links to Rfam database...	0.69	0.62	0.76	61	67081	25	9	10	6	38
TMR_00699	tmRNA links to Rfam database...	0.70	0.56	0.88	57	67096	13	1	7	5	45
TMR_00702	tmRNA links to Rfam database...	0.61	0.50	0.75	50	67094	24	4	13	7	50
TMR_00703	tmRNA links to Rfam database...	0.71	0.60	0.84	59	67458	17	2	9	6	40

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	26557
Total TN	116762035
Total FP	33958
Total FP CONTRA	4801
Total FP INCONS	25812
Total FP COMP	3345
Total FN	31955

Total Scores
MCC	0.459
Average MCC ± 95% Confidence Intervals	0.503 ± 0.019
Sensitivity	0.454
Positive Predictive Value	0.465
Nr of predictions	286

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	98	80484	21	4	15	2	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	86	104057	60	7	46	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.48	56	82911	67	6	55	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.57	69	84545	60	8	44	8	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	83	89971	49	2	44	3	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	47	3	40	4	72
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	78	88288	49	5	39	5	66
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	69	84130	59	6	50	3	67
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	73	89127	58	2	51	5	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	72	93827	66	5	57	4	76
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00292	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	82	81693	38	3	32	3	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	40	91676	90	9	81	0	105
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00318	RNaseP_bact_b links to Rfam database...	0.65	0.64	0.67	75	80088	41	13	24	4	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	71	81683	57	2	54	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.63	78	101352	64	17	28	19	33
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	89	21	49	19	58
RFA_00602	Telomerase-vert links to Rfam database...	0.51	0.53	0.48	62	101347	86	18	48	20	54
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]