CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(seed)		CentroidAlifold(20)
MCC	0.758	>	0.723
Average MCC ± 95% Confidence Intervals	0.758 ± 0.011	>	0.720 ± 0.013
Sensitivity	0.709	>	0.595
Positive Predictive Value	0.810	<	0.879
Total TP	41509	>	34794
Total TN	116767940	<	116779608
Total FP	15030	>	6873
Total FP CONTRA	2050	>	878
Total FP INCONS	7706	>	3925
Total FP COMP	5274	>	2070
Total FN	17003	<	23718
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and CentroidAlifold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidAlifold(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidAlifold(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and CentroidAlifold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and CentroidAlifold(20)).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	41509
Total TN	116767940
Total FP	15030
Total FP CONTRA	2050
Total FP INCONS	7706
Total FP COMP	5274
Total FN	17003

Total Scores
MCC	0.758
Average MCC ± 95% Confidence Intervals	0.758 ± 0.011
Sensitivity	0.709
Positive Predictive Value	0.810
Nr of predictions	286

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	405	1085153	80	10	33	37	53
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.80	0.78	0.83	369	1141870	113	17	60	36	105
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	395	1170759	96	18	43	35	75
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	390	1107367	95	16	43	36	66
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	392	1172293	95	17	44	34	81
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	388	1181504	96	16	45	35	88
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	394	1108851	94	17	43	34	63
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	392	1178434	98	11	43	44	73
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	387	1135829	97	15	47	35	76
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	392	1201573	98	16	44	38	84
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	385	1152477	92	16	43	33	81
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1179969	96	16	45	35	85
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	393	1190749	97	11	43	43	75
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.79	0.81	353	1082222	118	17	64	37	92
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1178430	105	17	47	41	87
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	384	1207786	102	15	50	37	91
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	392	1198473	97	16	45	36	86
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	388	1105880	95	18	42	35	65
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.86	388	1218691	98	16	46	36	96
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	391	1198474	97	16	45	36	87
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	386	1192295	93	16	43	34	82
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	391	1111838	94	15	42	37	64
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	378	1122307	105	14	52	39	84
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.86	380	1085161	98	14	46	38	66
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	390	1114823	98	15	43	40	67
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1110354	101	16	48	37	76
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	369	1129823	106	15	49	42	81
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.86	385	1179970	103	16	45	42	79
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1117815	109	16	52	41	76
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	388	1144894	97	16	43	38	76
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.84	372	1131319	111	16	53	42	84
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	377	1117816	104	17	50	37	81
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.84	382	1189200	109	16	55	38	94
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.66	0.63	0.69	310	1620452	212	16	122	74	184
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.67	307	1762046	213	15	135	63	212
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.68	0.66	0.70	305	1445417	186	15	113	58	157
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.68	305	1805503	209	14	128	67	216
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.66	0.63	0.69	315	1627654	205	15	126	64	187
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.64	0.59	0.69	307	1988567	210	13	128	69	210
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.60	0.56	0.63	269	1769595	236	16	141	79	208
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.58	0.52	0.64	269	1892065	217	19	132	66	245
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	305	1586418	211	15	133	63	193
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.65	0.61	0.69	308	1584644	204	15	123	66	193
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	312	1615046	210	15	130	65	191
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.67	306	1674911	213	16	132	65	201
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	300	1579311	211	15	127	69	182
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.69	313	1640313	205	15	125	65	193
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.68	0.65	0.71	322	1611455	199	13	120	66	174
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	306	1625847	221	14	139	68	192
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.60	0.54	0.66	286	2126521	223	18	128	77	248
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.61	0.58	0.65	297	1750802	227	16	141	70	218
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.68	0.66	0.70	306	1606090	215	15	117	83	158
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.67	0.64	0.71	318	1615053	200	15	117	68	178
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	303	1665770	223	20	132	71	192
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	391	1116315	99	14	45	40	67
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	376	1094037	99	6	41	52	69
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119327	104	6	42	56	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.89	382	1098473	103	6	42	55	64
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.63	0.60	0.66	294	1665777	224	19	135	70	197
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	294	1640327	224	15	130	79	189
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	297	1636709	218	15	124	79	184
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.63	0.59	0.66	287	1638522	227	17	129	81	199
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.81	309	945618	130	6	67	57	95
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	362	1137365	112	11	48	53	85
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	299	1152557	159	6	59	94	95
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.81	359	1117819	116	16	66	34	111
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	395	1135823	93	17	43	33	69
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.61	0.58	0.64	294	1606070	223	18	146	59	209
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.63	0.60	0.67	304	1593548	214	15	138	61	202
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.62	0.59	0.66	302	1693261	218	17	140	61	213
PDB_00571	tRNA links to Rfam database...	0.85	0.80	0.91	20	3299	2	2	0	0	5
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.86	361	1073423	107	9	52	46	134
PDB_00828	Purine links to Rfam database...	0.84	0.78	0.91	21	2462	3	2	0	1	6
PDB_00829	Purine links to Rfam database...	0.87	0.83	0.91	20	2256	3	2	0	1	4
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.76	0.68	0.86	364	1500354	120	9	51	60	171
PDB_01020	Purine links to Rfam database...	0.86	0.83	0.90	19	2257	4	2	0	2	4
PDB_01073	SAM links to Rfam database...	0.77	0.68	0.88	23	4345	4	2	1	1	11
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.85	365	1471040	119	5	60	54	182
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.76	0.67	0.86	376	1606090	108	8	54	46	186
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.77	0.70	0.86	376	1433534	108	3	58	47	164
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.73	0.86	387	1204680	102	10	51	41	140
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.86	368	1117832	112	8	52	52	123
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
TMR_00017	tmRNA links to Rfam database...	0.72	0.62	0.84	63	67086	20	6	6	8	39
TMR_00018	tmRNA links to Rfam database...	0.65	0.59	0.72	54	64545	29	8	13	8	38
TMR_00038	tmRNA links to Rfam database...	0.64	0.52	0.79	57	71181	21	6	9	6	53
TMR_00042	tmRNA links to Rfam database...	0.68	0.60	0.78	59	62759	23	7	10	6	39
TMR_00046	tmRNA links to Rfam database...	0.47	0.42	0.53	40	62760	41	6	29	6	56
TMR_00048	tmRNA links to Rfam database...	0.68	0.61	0.76	58	64904	24	7	11	6	37
TMR_00080	tmRNA links to Rfam database...	0.55	0.49	0.63	47	70425	35	10	18	7	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.51	0.68	49	67824	32	9	14	9	47
TMR_00123	tmRNA links to Rfam database...	0.72	0.61	0.84	62	66356	21	7	5	9	39
TMR_00137	tmRNA links to Rfam database...	0.63	0.56	0.71	50	61005	32	8	12	12	39
TMR_00142	tmRNA links to Rfam database...	0.63	0.54	0.74	55	70802	27	4	15	8	47
TMR_00207	tmRNA links to Rfam database...	0.68	0.57	0.80	59	72316	24	7	8	9	44
TMR_00257	tmRNA links to Rfam database...	0.72	0.62	0.82	61	67087	22	7	6	9	37
TMR_00271	tmRNA links to Rfam database...	0.62	0.54	0.71	49	64192	32	7	13	12	42
TMR_00332	tmRNA links to Rfam database...	0.69	0.60	0.80	59	67087	25	6	9	10	40
TMR_00366	tmRNA links to Rfam database...	0.63	0.54	0.74	54	67823	28	3	16	9	46
TMR_00378	tmRNA links to Rfam database...	0.65	0.55	0.77	53	67827	26	3	13	10	44
TMR_00399	tmRNA links to Rfam database...	0.66	0.59	0.74	55	64906	26	9	10	7	39
TMR_00404	tmRNA links to Rfam database...	0.58	0.51	0.66	47	67457	35	6	18	11	45
TMR_00427	tmRNA links to Rfam database...	0.68	0.60	0.76	58	67452	26	11	7	8	39
TMR_00443	tmRNA links to Rfam database...	0.72	0.62	0.84	64	67085	19	6	6	7	40
TMR_00451	tmRNA links to Rfam database...	0.56	0.51	0.63	45	63474	37	13	14	10	44
TMR_00458	tmRNA links to Rfam database...	0.66	0.58	0.75	54	63474	29	8	10	11	39
TMR_00469	tmRNA links to Rfam database...	0.71	0.61	0.84	61	64547	20	6	6	8	39
TMR_00472	tmRNA links to Rfam database...	0.68	0.59	0.79	57	64548	23	7	8	8	40
TMR_00519	tmRNA links to Rfam database...	0.64	0.57	0.72	54	63115	29	9	12	8	41
TMR_00520	tmRNA links to Rfam database...	0.68	0.60	0.79	59	63115	25	7	9	9	40
TMR_00522	tmRNA links to Rfam database...	0.65	0.56	0.75	54	63118	28	6	12	10	43
TMR_00528	tmRNA links to Rfam database...	0.64	0.56	0.74	54	63117	28	6	13	9	43
TMR_00540	tmRNA links to Rfam database...	0.65	0.56	0.75	58	73459	25	9	10	6	46
TMR_00568	tmRNA links to Rfam database...	0.76	0.65	0.89	64	60654	17	1	7	9	35
TMR_00571	tmRNA links to Rfam database...	0.78	0.67	0.92	66	60654	16	1	5	10	33
TMR_00580	tmRNA links to Rfam database...	0.74	0.61	0.90	61	60658	17	2	5	10	39
TMR_00584	tmRNA links to Rfam database...	0.77	0.65	0.91	63	61006	14	2	4	8	34
TMR_00586	tmRNA links to Rfam database...	0.74	0.64	0.85	62	61002	19	5	6	8	35
TMR_00616	tmRNA links to Rfam database...	0.65	0.56	0.75	55	67088	24	8	10	6	44
TMR_00699	tmRNA links to Rfam database...	0.68	0.58	0.80	59	67087	23	6	9	8	43
TMR_00702	tmRNA links to Rfam database...	0.64	0.55	0.74	55	67087	27	3	16	8	45
TMR_00703	tmRNA links to Rfam database...	0.68	0.60	0.79	59	67453	23	7	9	7	40

^top

Performance of CentroidAlifold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(20)

Total Base Pair Counts
Total TP	34794
Total TN	116779608
Total FP	6873
Total FP CONTRA	878
Total FP INCONS	3925
Total FP COMP	2070
Total FN	23718

Total Scores
MCC	0.723
Average MCC ± 95% Confidence Intervals	0.720 ± 0.013
Sensitivity	0.595
Positive Predictive Value	0.879
Nr of predictions	286

^top

2. Individual counts for CentroidAlifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	40	47842	13	0	13	0	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.97	66	57902	2	0	2	0	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	46	47534	6	0	6	0	47
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.73	0.96	80	59602	3	0	3	0	30
ASE_00012	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	69	73843	11	2	6	3	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.95	81	80516	4	1	3	0	53
ASE_00020	RNaseP_bact_a links to Rfam database...	0.60	0.41	0.87	52	73860	8	5	3	0	74
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.36	0.86	57	104130	12	2	7	3	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.79	0.63	1.00	78	82950	4	0	0	4	46
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.55	1.00	69	84597	3	0	0	3	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.93	65	70430	8	0	5	3	53
ASE_00037	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	71	59269	1	0	0	1	39
ASE_00038	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	59	53569	0	0	0	0	42
ASE_00040	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	88	78912	5	0	3	2	45
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	71	57551	8	0	8	0	37
ASE_00042	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.81	64	90021	15	0	15	0	81
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	74	54540	1	0	1	0	31
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	58	45391	2	0	2	0	31
ASE_00068	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	35	37634	6	0	6	0	50
ASE_00074	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	75	67821	1	0	0	1	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.56	0.35	0.89	57	108747	12	1	6	5	105
ASE_00077	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	45090	4	1	3	0	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	59	43012	0	0	0	0	24
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.67	39	71573	19	1	18	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	58	49711	1	0	1	0	39
ASE_00082	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.98	57	70442	7	0	1	6	59
ASE_00083	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	60	62420	1	0	1	0	50
ASE_00084	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.97	60	53566	2	1	1	0	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.61	0.39	0.97	56	88352	2	0	2	0	88
ASE_00090	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	59	55552	0	0	0	0	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.97	59	63485	2	1	1	0	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.68	1.00	82	64538	0	0	0	0	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	76	64183	2	0	2	0	43
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.37	0.76	41	64207	13	2	11	0	70
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.95	82	73067	4	0	4	0	45
ASE_00115	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	61	54553	1	0	1	0	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.96	46	62787	2	1	1	0	62
ASE_00123	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	51	38449	3	1	2	0	34
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	44	39296	0	0	0	0	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	53	40417	1	0	0	1	29
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	58	53243	0	0	0	0	42
ASE_00129	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	63	62772	0	0	0	0	48
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	45	39295	0	0	0	0	40
ASE_00134	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	58	50338	7	0	7	0	37
ASE_00135	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	47	63130	13	0	13	0	62
ASE_00136	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.95	57	48145	3	0	3	0	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.91	50	48461	6	0	5	1	48
ASE_00138	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	56	40413	1	1	0	0	25
ASE_00140	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.91	50	70821	5	3	2	0	75
ASE_00142	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.97	84	67074	5	0	3	2	38
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	84	70789	3	0	3	0	40
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.26	0.45	19	57588	23	4	19	0	54
ASE_00163	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.97	59	53240	2	1	1	0	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	52919	2	0	1	1	46
ASE_00170	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	58	48764	6	1	5	0	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	59	48456	2	0	1	1	35
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.95	54	58939	3	2	1	0	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	48	61017	10	1	9	0	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	55	59967	9	1	8	0	52
ASE_00179	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.93	50	44199	5	2	2	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	57	51301	2	1	1	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.93	57	57569	6	1	3	2	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.93	56	84195	4	1	3	0	80
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	58	61365	2	1	1	0	55
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	60	54554	1	0	1	0	42
ASE_00185	RNaseP_bact_a links to Rfam database...	0.63	0.41	0.96	53	73481	2	1	1	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	73	78923	10	0	7	3	59
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.56	1.00	50	45401	2	0	0	2	40
ASE_00197	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	72	89170	12	0	11	1	73
ASE_00198	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.97	61	52587	2	0	2	0	41
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.58	0.98	56	46608	1	0	1	0	40
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.88	67	93885	10	0	9	1	81
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	56	56222	3	1	1	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.37	0.84	37	48472	7	0	7	0	62
ASE_00216	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	55	39285	0	0	0	0	27
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	62	40407	2	0	1	1	28
ASE_00221	RNaseP_bact_a links to Rfam database...	0.84	0.73	0.97	85	64532	3	0	3	0	32
ASE_00228	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.88	53	46911	8	3	4	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	52	42433	3	0	1	2	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.87	46	47842	7	0	7	0	50
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	57	38444	2	2	0	0	27
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.82	54	75400	12	5	7	0	75
ASE_00238	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	46	64200	15	3	12	0	68
ASE_00241	RNaseP_bact_a links to Rfam database...	0.84	0.72	0.97	63	43891	2	0	2	0	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.77	0.99	86	60988	3	0	1	2	26
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.72	0.99	82	62398	2	0	1	1	32
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.98	57	36798	1	0	1	0	25
ASE_00255	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.79	53	74624	14	0	14	0	77
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	49	50983	8	2	6	0	48
ASE_00263	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	63	70436	1	1	0	0	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	59	45091	1	0	0	1	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.56	0.35	0.90	45	72340	6	0	5	1	83
ASE_00274	RNaseP_bact_a links to Rfam database...	0.65	0.47	0.91	48	55558	5	3	2	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.83	43	48153	9	2	7	0	48
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	64	53234	3	0	3	0	37
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.97	58	51943	2	1	1	0	40
ASE_00281	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.97	59	44490	2	0	2	0	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	64	77751	0	0	0	0	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	58	61716	2	0	2	0	49
ASE_00284	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.98	60	58250	1	0	1	0	48
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	68	68934	4	2	2	0	54
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	59	46605	1	0	1	0	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.83	55	54880	11	0	11	0	48
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.98	90	81718	3	0	2	1	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	89	114388	5	0	4	1	82
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	82	91717	8	1	6	1	63
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	42	52924	9	2	7	0	56
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.97	61	67465	2	1	1	0	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.79	0.63	0.99	74	80125	8	0	1	7	44
ASE_00328	RNaseP_bact_b links to Rfam database...	0.78	0.62	0.99	69	72701	6	0	1	5	43
ASE_00332	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.94	74	81731	5	0	5	0	64
ASE_00335	RNaseP_bact_b links to Rfam database...	0.74	0.59	0.92	69	75391	13	0	6	7	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	52	46000	8	0	4	4	33
ASE_00342	RNaseP_bact_a links to Rfam database...	0.86	0.75	0.99	86	62394	1	0	1	0	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	54	57915	2	1	0	1	53
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.42	1.00	53	75413	0	0	0	0	74
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.58	0.98	53	48151	2	0	1	1	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.88	53	51300	7	0	7	0	41
ASE_00364	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	56	54222	7	1	6	0	49
ASE_00366	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	57	58589	7	1	6	0	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	61	43010	1	0	0	1	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	64	55880	1	0	1	0	43
ASE_00370	RNaseP_bact_a links to Rfam database...	0.76	0.60	0.96	50	41853	2	0	2	0	34
ASE_00372	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	57	51945	1	0	1	0	43
ASE_00374	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	58	44792	0	0	0	0	30
ASE_00376	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	58	56891	4	0	4	0	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	53	57570	7	1	6	0	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.96	54	46000	3	1	1	1	35
ASE_00382	RNaseP_bact_a links to Rfam database...	0.85	0.73	0.98	61	41843	2	0	1	1	23
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	62	54553	0	0	0	0	43
ASE_00384	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.97	57	48457	2	1	1	0	35
ASE_00386	RNaseP_bact_a links to Rfam database...	0.74	0.56	0.98	54	50348	1	0	1	0	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	51	55887	7	0	7	0	53
ASE_00388	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	55	45697	2	0	1	1	34
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	55	42135	5	2	3	0	30
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	54	47835	6	0	6	0	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	59	46911	1	0	1	0	34
ASE_00395	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	53	41558	5	0	5	0	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.82	0.69	0.98	57	41558	1	0	1	0	26
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	54	55889	2	0	2	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.77	0.60	0.98	64	57905	2	0	1	1	42
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.95	56	76969	3	1	2	0	70
ASE_00402	RNaseP_bact_a links to Rfam database...	0.79	0.62	1.00	53	42433	0	0	0	0	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	61	55883	1	0	1	0	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	56	43014	2	0	1	1	29
ASE_00406	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	57	48770	1	0	1	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.65	0.54	0.77	48	49393	14	6	8	0	41
ASE_00412	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.72	42	58253	16	2	14	0	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	52	44495	5	3	1	1	29
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	40	54895	11	0	11	0	63
ASE_00416	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	74	77341	6	1	5	0	53
ASE_00419	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.88	56	54882	8	3	5	0	47
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	46908	11	0	10	1	41
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	72	56871	11	0	10	1	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	80	76547	9	1	8	0	45
ASE_00430	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	55	46914	2	0	2	0	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.56	0.46	0.68	62	79310	29	0	29	0	73
ASE_00441	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.94	46	64212	4	0	3	1	66
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	79	64177	5	0	5	0	33
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.95	82	70790	4	0	4	0	43
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.91	0.86	0.95	394	1085188	51	6	13	32	64
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	365	1141911	54	9	31	14	109
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	374	1170812	45	10	19	16	96
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	364	1107423	43	10	19	14	92
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.93	368	1172351	42	9	18	15	105
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	380	1181542	47	10	21	16	96
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	365	1108906	48	11	23	14	92
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.86	0.78	0.95	363	1178497	43	4	16	23	102
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	372	1135875	46	11	20	15	91
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.93	371	1201625	47	10	19	18	105
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	372	1152515	48	10	24	14	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.91	364	1180015	52	13	24	15	107
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.78	0.94	364	1190809	45	4	19	22	104
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.86	332	1082272	67	11	41	15	113
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.83	0.75	0.92	356	1178493	48	7	24	17	117
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.94	377	1207832	45	8	18	19	98
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.94	378	1198524	39	8	16	15	100
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	367	1105932	46	9	20	17	86
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.85	0.77	0.92	375	1218735	46	11	20	15	109
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.92	370	1198524	46	11	21	14	108
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.91	360	1192345	51	10	25	16	108
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	362	1111893	46	11	20	15	93
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.91	355	1122363	48	8	25	15	107
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.92	354	1085218	46	8	21	17	92
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	371	1114870	46	9	21	16	86
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.91	354	1110408	50	12	21	17	99
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.78	0.91	351	1129869	54	7	29	18	99
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.92	357	1180030	50	8	21	21	107
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.89	357	1117860	63	9	34	20	96
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.92	357	1144951	49	9	24	16	107
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.91	350	1131377	50	7	26	17	106
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	353	1117869	56	11	27	18	105
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.82	0.75	0.91	356	1189260	53	9	28	16	120
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.72	183	1620647	90	6	64	20	311
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.47	0.34	0.64	178	1762223	133	11	91	31	341
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.73	171	1445616	97	6	57	34	291
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.49	0.37	0.66	192	1805657	126	13	88	25	329
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.40	0.80	201	1627859	78	6	44	28	301
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.51	0.37	0.71	190	1988747	113	10	68	35	327
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.48	0.34	0.67	161	1769781	123	8	71	44	316
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.43	0.30	0.61	155	1892229	131	20	81	30	359
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.51	0.36	0.72	181	1586621	96	8	61	27	317
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.53	0.38	0.74	192	1584829	102	6	63	33	309
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.54	0.40	0.72	200	1615226	107	10	67	30	303
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.53	0.39	0.73	196	1675098	99	8	63	28	311
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.71	180	1579501	100	8	64	28	302
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.58	0.41	0.83	208	1640515	64	4	39	21	298
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.55	0.40	0.75	199	1611646	93	8	57	28	297
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.50	0.37	0.69	182	1626042	112	11	71	30	316
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.33	0.72	176	2126710	109	5	62	42	358
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.51	0.35	0.73	182	1751006	96	7	61	28	333
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.52	0.39	0.70	180	1606270	126	11	67	48	284
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.51	0.38	0.68	189	1615224	117	8	82	27	307
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.48	0.34	0.67	170	1665972	109	11	72	26	325
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.93	364	1116372	45	9	20	16	94
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.86	0.78	0.94	347	1094091	45	2	20	23	98
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.93	359	1119369	53	3	25	25	93
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.92	354	1098520	55	6	23	26	92
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.49	0.34	0.70	169	1665982	103	5	69	29	322
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.52	0.38	0.72	184	1640510	108	6	66	36	299
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.51	0.38	0.69	181	1636884	113	8	72	33	300
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.52	0.37	0.74	180	1638713	102	7	55	40	306
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.85	295	945652	81	5	48	28	109
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.83	0.76	0.91	340	1137411	63	5	30	28	107
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.80	0.72	0.88	284	1152598	97	3	36	58	110
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	357	1117854	65	10	39	16	113
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	369	1135873	50	13	23	14	95
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.50	0.36	0.69	179	1606270	108	8	71	29	324
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.49	0.36	0.67	183	1593733	116	11	78	27	323
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.55	0.40	0.76	205	1693451	88	6	58	24	310
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.81	0.70	0.92	348	1073468	55	8	21	26	147
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.77	0.65	0.90	348	1500393	73	4	33	36	187
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.62	0.90	341	1471090	76	2	37	37	206
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.77	0.64	0.92	361	1606134	59	8	25	26	201
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.78	0.66	0.92	359	1433581	59	2	29	28	181
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.79	0.68	0.92	357	1204739	53	7	25	21	170
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.69	0.91	341	1117886	62	6	27	29	150
RFA_00599	Telomerase-vert links to Rfam database...	0.89	0.83	0.96	92	101379	9	1	3	5	19
RFA_00601	Telomerase-vert links to Rfam database...	0.90	0.86	0.93	98	99130	13	1	6	6	16
RFA_00602	Telomerase-vert links to Rfam database...	0.87	0.84	0.91	97	101368	18	1	9	8	19
TMR_00017	tmRNA links to Rfam database...	0.80	0.65	0.99	66	67094	1	0	1	0	36
TMR_00018	tmRNA links to Rfam database...	0.65	0.54	0.78	50	64556	15	5	9	1	42
TMR_00038	tmRNA links to Rfam database...	0.68	0.56	0.82	62	71177	15	5	9	1	48
TMR_00042	tmRNA links to Rfam database...	0.66	0.53	0.83	52	62772	12	4	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.53	0.45	0.63	43	62767	26	4	21	1	53
TMR_00048	tmRNA links to Rfam database...	0.66	0.53	0.82	50	64919	12	7	4	1	45
TMR_00080	tmRNA links to Rfam database...	0.63	0.52	0.77	50	70435	15	8	7	0	46
TMR_00082	tmRNA links to Rfam database...	0.66	0.56	0.78	54	67827	18	7	8	3	42
TMR_00123	tmRNA links to Rfam database...	0.79	0.64	0.97	65	66363	3	1	1	1	36
TMR_00137	tmRNA links to Rfam database...	0.68	0.55	0.83	49	61016	13	6	4	3	40
TMR_00142	tmRNA links to Rfam database...	0.65	0.46	0.92	47	70825	11	0	4	7	55
TMR_00207	tmRNA links to Rfam database...	0.74	0.57	0.97	59	72329	4	1	1	2	44
TMR_00257	tmRNA links to Rfam database...	0.78	0.64	0.94	63	67094	4	4	0	0	35
TMR_00271	tmRNA links to Rfam database...	0.55	0.44	0.68	40	64202	24	6	13	5	51
TMR_00332	tmRNA links to Rfam database...	0.67	0.48	0.92	48	67109	5	1	3	1	51
TMR_00366	tmRNA links to Rfam database...	0.70	0.49	1.00	49	67847	7	0	0	7	51
TMR_00378	tmRNA links to Rfam database...	0.63	0.46	0.87	45	67844	15	1	6	8	52
TMR_00399	tmRNA links to Rfam database...	0.60	0.49	0.74	46	64918	16	6	10	0	48
TMR_00404	tmRNA links to Rfam database...	0.60	0.50	0.72	46	67464	21	3	15	3	46
TMR_00427	tmRNA links to Rfam database...	0.63	0.45	0.86	44	67477	8	7	0	1	53
TMR_00443	tmRNA links to Rfam database...	0.73	0.58	0.92	60	67096	6	0	5	1	44
TMR_00451	tmRNA links to Rfam database...	0.63	0.55	0.73	49	63479	20	10	8	2	40
TMR_00458	tmRNA links to Rfam database...	0.65	0.54	0.79	50	63483	15	6	7	2	43
TMR_00469	tmRNA links to Rfam database...	0.79	0.69	0.91	69	64544	10	6	1	3	31
TMR_00472	tmRNA links to Rfam database...	0.72	0.64	0.82	62	64544	15	7	7	1	35
TMR_00519	tmRNA links to Rfam database...	0.63	0.53	0.75	50	63123	19	5	12	2	45
TMR_00520	tmRNA links to Rfam database...	0.63	0.48	0.81	48	63131	13	3	8	2	51
TMR_00522	tmRNA links to Rfam database...	0.62	0.47	0.82	46	63134	15	4	6	5	51
TMR_00528	tmRNA links to Rfam database...	0.67	0.54	0.84	52	63128	15	4	6	5	45
TMR_00540	tmRNA links to Rfam database...	0.60	0.45	0.81	47	73478	11	4	7	0	57
TMR_00568	tmRNA links to Rfam database...	0.77	0.68	0.87	67	60649	15	1	9	5	32
TMR_00571	tmRNA links to Rfam database...	0.80	0.71	0.91	70	60649	12	1	6	5	29
TMR_00580	tmRNA links to Rfam database...	0.78	0.68	0.89	68	60650	13	2	6	5	32
TMR_00584	tmRNA links to Rfam database...	0.80	0.70	0.91	68	61000	10	3	4	3	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.66	0.83	64	60998	18	6	7	5	33
TMR_00616	tmRNA links to Rfam database...	0.74	0.65	0.85	64	67086	12	7	4	1	35
TMR_00699	tmRNA links to Rfam database...	0.66	0.49	0.89	50	67105	6	1	5	0	52
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	12	2	10	0	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.57	0.90	56	67466	6	2	4	0	43

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of CentroidAlifold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(20)

2. Individual counts for CentroidAlifold(20) [ download as .csv ]