CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(seed)		RSpredict(seed)
MCC	0.760	>	0.363
Average MCC ± 95% Confidence Intervals	0.728 ± 0.014	>	0.136 ± 0.024
Sensitivity	0.700	>	0.222
Positive Predictive Value	0.826	>	0.596
Total TP	39511	>	12528
Total TN	88712720	<	88739512
Total FP	12538	>	10116
Total FP CONTRA	1901	>	1293
Total FP INCONS	6400	<	7199
Total FP COMP	4237	>	1624
Total FN	16968	<	43951
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and RSpredict(seed)).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	39511
Total TN	88712720
Total FP	12538
Total FP CONTRA	1901
Total FP INCONS	6400
Total FP COMP	4237
Total FN	16968

Total Scores
MCC	0.760
Average MCC ± 95% Confidence Intervals	0.728 ± 0.014
Sensitivity	0.700
Positive Predictive Value	0.826
Nr of predictions	354

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.68	0.57	0.80	43	34137	14	4	7	3	32
ASE_00002	RNaseP_arch links to Rfam database...	0.72	0.62	0.85	45	35458	13	3	5	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.75	0.85	50	26047	14	2	7	5	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00014	RNaseP_arch links to Rfam database...	0.71	0.60	0.84	64	54209	16	3	9	4	42
ASE_00017	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	50982	24	3	16	5	25
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00023	RNaseP_bact_a links to Rfam database...	0.44	0.38	0.52	48	84163	47	10	34	3	79
ASE_00025	RNaseP_nuc links to Rfam database...	0.56	0.51	0.62	36	78548	27	3	19	5	35
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	86	59581	24	4	14	6	24
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00029	RNaseP_bact_a links to Rfam database...	0.40	0.34	0.47	42	82939	51	6	41	4	80
ASE_00030	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	88	85383	23	5	15	3	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.51	46	86646	46	4	40	2	80
ASE_00032	RNaseP_bact_a links to Rfam database...	0.33	0.28	0.39	33	80115	55	7	45	3	85
ASE_00033	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	96	64874	16	5	5	6	25
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00036	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	84	75757	19	4	10	5	48
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00046	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.81	78	50307	23	3	15	5	25
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	84	74206	19	5	10	4	46
ASE_00052	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	61323	27	5	16	6	31
ASE_00053	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	85	79301	20	7	8	5	48
ASE_00057	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	86	82110	24	5	14	5	48
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00066	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	89	72291	14	5	5	4	41
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00069	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	89	82927	18	4	8	6	51
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	68183	20	3	11	6	50
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00079	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	63	55530	24	4	14	6	37
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00096	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	63464	24	3	15	6	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00100	RNaseP_nuc links to Rfam database...	0.59	0.51	0.67	39	82157	24	3	16	5	37
ASE_00102	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.74	78	117750	32	5	22	5	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00108	RNaseP_nuc links to Rfam database...	0.64	0.62	0.67	39	46913	24	3	16	5	24
ASE_00111	RNaseP_nuc links to Rfam database...	0.82	0.81	0.84	46	50031	13	4	5	4	11
ASE_00112	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.50	42	75382	44	4	38	2	74
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00116	RNaseP_arch links to Rfam database...	0.77	0.71	0.84	47	31570	13	3	6	4	19
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00120	RNaseP_arch links to Rfam database...	0.78	0.69	0.88	65	46897	14	3	6	5	29
ASE_00121	RNaseP_arch links to Rfam database...	0.76	0.68	0.84	63	45075	16	4	8	4	29
ASE_00122	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	43284	14	3	6	5	16
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	71	50321	16	6	5	5	24
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00139	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	67	54206	17	4	8	5	37
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00145	RNaseP_arch links to Rfam database...	0.74	0.62	0.88	69	70047	13	3	6	4	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00148	RNaseP_arch links to Rfam database...	0.59	0.42	0.84	64	112499	16	3	9	4	90
ASE_00151	RNaseP_bact_a links to Rfam database...	0.83	0.83	0.84	81	51906	21	8	8	5	17
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00154	RNaseP_arch links to Rfam database...	0.70	0.60	0.82	64	65263	18	3	11	4	43
ASE_00155	RNaseP_arch links to Rfam database...	0.66	0.49	0.88	69	93450	13	3	6	4	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00168	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	60668	24	3	16	5	25
ASE_00169	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	68	57209	19	4	10	5	39
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00176	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	66	59951	19	5	9	5	44
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00187	RNaseP_arch links to Rfam database...	0.67	0.54	0.83	62	68560	17	4	9	4	53
ASE_00189	RNaseP_bact_b links to Rfam database...	0.80	0.76	0.84	78	63097	27	2	13	12	24
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00192	RNaseP_bact_b links to Rfam database...	0.53	0.44	0.64	59	84574	40	3	30	7	74
ASE_00194	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.86	78	73445	25	2	11	12	41
ASE_00196	RNaseP_arch links to Rfam database...	0.74	0.69	0.80	52	31561	18	2	11	5	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00204	RNaseP_bact_b links to Rfam database...	0.77	0.69	0.86	77	67806	26	3	10	13	35
ASE_00205	RNaseP_arch links to Rfam database...	0.79	0.70	0.89	63	45985	13	4	4	5	27
ASE_00209	RNaseP_arch links to Rfam database...	0.81	0.75	0.88	66	42996	13	3	6	4	22
ASE_00210	RNaseP_arch links to Rfam database...	0.68	0.65	0.71	42	27202	24	2	15	7	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00213	RNaseP_arch links to Rfam database...	0.78	0.74	0.83	49	27202	17	2	8	7	17
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00222	RNaseP_arch links to Rfam database...	0.62	0.44	0.88	69	112023	13	3	6	4	88
ASE_00227	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	67	78906	33	3	27	3	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.82	0.84	46	45698	13	4	5	4	10
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00240	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	59	46586	25	3	17	5	34
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00246	RNaseP_nuc links to Rfam database...	0.64	0.60	0.69	40	48147	23	3	15	5	27
ASE_00247	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	54227	24	3	16	5	25
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00250	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	92	78896	20	5	10	5	39
ASE_00252	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	86	115340	23	5	9	9	82
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00259	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	75	73050	33	2	26	5	46
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00264	RNaseP_nuc links to Rfam database...	0.62	0.47	0.81	47	49083	15	2	9	4	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00288	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	72	45973	16	5	6	5	21
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	85	100921	24	5	14	5	72
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00295	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.87	91	73815	19	4	10	5	40
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00299	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	52	49370	34	5	28	1	48
ASE_00313	RNaseP_nuc links to Rfam database...	0.59	0.45	0.77	40	62429	19	4	8	7	49
ASE_00316	RNaseP_nuc links to Rfam database...	0.50	0.33	0.78	32	107839	16	2	7	7	66
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00327	RNaseP_nuc links to Rfam database...	0.65	0.51	0.83	45	57237	17	2	7	8	44
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00330	RNaseP_nuc links to Rfam database...	0.68	0.54	0.84	49	56222	13	3	6	4	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00337	RNaseP_nuc links to Rfam database...	0.66	0.56	0.77	40	39288	23	2	10	11	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.59	0.43	0.81	42	66378	13	4	6	3	56
ASE_00339	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.57	56	80101	45	15	28	2	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00343	RNaseP_bact_a links to Rfam database...	0.31	0.27	0.36	31	83349	63	6	50	7	82
ASE_00346	RNaseP_arch links to Rfam database...	0.60	0.53	0.68	51	48130	29	3	21	5	46
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00359	RNaseP_arch links to Rfam database...	0.68	0.56	0.82	45	42723	15	3	7	5	35
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.72	0.84	47	29347	13	3	6	4	18
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00375	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.89	73	60296	15	3	6	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00380	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	68	54865	18	4	9	5	31
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00385	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.75	58	41828	24	4	15	5	23
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00414	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	52	46282	27	8	18	1	43
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00417	RNaseP_arch links to Rfam database...	0.77	0.68	0.87	68	54537	14	3	7	4	32
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.61	0.82	46	38725	14	3	7	4	29
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00426	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	50	60984	42	9	32	1	58
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00431	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	52	46276	33	12	20	1	43
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.71	0.78	78	68165	36	2	20	14	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00438	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.71	58	65984	27	5	19	3	58
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00447	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.91	98	60270	15	4	6	5	18
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
CRW_00013	Intron_gpI links to Rfam database...	0.41	0.25	0.66	29	103696	18	0	15	3	86
CRW_00016	Intron_gpI links to Rfam database...	0.40	0.24	0.66	29	77377	17	0	15	2	91
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	405	1085153	80	10	33	37	53
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	395	1170759	96	18	43	35	75
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	390	1107367	95	16	43	36	66
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	392	1172293	95	17	44	34	81
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	388	1181504	96	16	45	35	88
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	394	1108851	94	17	43	34	63
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	392	1178434	98	11	43	44	73
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	387	1135829	97	15	47	35	76
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	392	1201573	98	16	44	38	84
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	385	1152477	92	16	43	33	81
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1179969	96	16	45	35	85
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.84	0.88	393	1190749	97	11	43	43	75
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.79	0.81	353	1082222	118	17	64	37	92
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	386	1178430	105	17	47	41	87
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	384	1207786	102	15	50	37	91
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	392	1198473	97	16	45	36	86
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	388	1105880	95	18	42	35	65
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.86	388	1218691	98	16	46	36	96
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	391	1198474	97	16	45	36	87
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	386	1192295	93	16	43	34	82
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	391	1111838	94	15	42	37	64
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	378	1122307	105	14	52	39	84
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.86	380	1085161	98	14	46	38	66
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	390	1114823	98	15	43	40	67
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1110354	101	16	48	37	76
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	377	1117815	109	16	52	41	76
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.87	388	1144894	97	16	43	38	76
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.78	0.77	0.80	331	1015610	118	18	66	34	101
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.84	382	1189200	109	16	55	38	94
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.74	0.72	0.77	332	1123817	133	22	79	32	129
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.68	0.66	0.70	305	1445417	186	15	113	58	157
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	300	1579311	211	15	127	69	182
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.68	0.65	0.71	322	1611455	199	13	120	66	174
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.60	0.54	0.66	286	2126521	223	18	128	77	248
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.67	0.64	0.71	318	1615053	200	15	117	68	178
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.64	0.61	0.67	303	1665770	223	20	132	71	192
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	391	1116315	99	14	45	40	67
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	376	1094037	99	6	41	52	69
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119327	104	6	42	56	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.89	382	1098473	103	6	42	55	64
CRW_00610	Intron_gpI links to Rfam database...	0.54	0.38	0.76	31	36274	12	1	9	2	50
CRW_00613	Intron_gpI links to Rfam database...	0.40	0.29	0.55	23	34938	22	1	18	3	55
CRW_00614	Intron_gpI links to Rfam database...	0.49	0.39	0.63	22	121736	16	2	11	3	35
CRW_00618	Intron_gpI links to Rfam database...	0.38	0.28	0.52	17	56247	16	2	14	0	44
CRW_00619	Intron_gpI links to Rfam database...	0.46	0.29	0.72	21	164996	11	1	7	3	52
CRW_00620	Intron_gpI links to Rfam database...	0.36	0.25	0.52	16	150944	27	0	15	12	47
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.25	0.49	18	153144	20	3	16	1	53
CRW_00623	Intron_gpI links to Rfam database...	0.43	0.28	0.68	23	129761	14	2	9	3	60
CRW_00633	Intron_gpI links to Rfam database...	0.38	0.24	0.61	25	63505	16	2	14	0	81
CRW_00634	Intron_gpI links to Rfam database...	0.31	0.19	0.50	18	64584	24	1	17	6	76
CRW_00670	Intron_gpI links to Rfam database...	0.51	0.31	0.84	37	70081	8	0	7	1	83
CRW_00671	Intron_gpI links to Rfam database...	0.52	0.32	0.84	37	62791	8	0	7	1	80
CRW_00672	Intron_gpI links to Rfam database...	0.52	0.32	0.84	36	72347	10	0	7	3	75
CRW_00674	Intron_gpI links to Rfam database...	0.25	0.15	0.45	18	83396	25	6	16	3	106
CRW_00676	Intron_gpI links to Rfam database...	0.29	0.16	0.53	18	93494	24	0	16	8	97
CRW_00692	Intron_gpI links to Rfam database...	0.32	0.20	0.53	18	68601	24	0	16	8	72
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.65	0.62	0.68	297	1636709	218	15	124	79	184
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.87	357	1215610	110	5	48	57	89
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.85	317	1201654	139	6	48	85	67
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	362	1137365	112	11	48	53	85
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	299	1152557	159	6	59	94	95
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.81	359	1117819	116	16	66	34	111
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	395	1135823	93	17	43	33	69
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.61	0.58	0.64	294	1606070	223	18	146	59	209
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.63	0.60	0.67	304	1593548	214	15	138	61	202
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.87	0.85	0.89	367	977489	81	8	37	36	67
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.86	361	1073423	107	9	52	46	134
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.57	0.81	13	2685	3	0	3	0	10
PDB_00827	Intron_gpI links to Rfam database...	0.50	0.37	0.68	30	26984	14	2	12	0	51
PDB_00828	Purine links to Rfam database...	0.84	0.78	0.91	21	2462	3	2	0	1	6
PDB_00829	Purine links to Rfam database...	0.87	0.83	0.91	20	2256	3	2	0	1	4
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.76	0.68	0.86	364	1500354	120	9	51	60	171
PDB_00919	RNaseP_bact_a links to Rfam database...	0.39	0.34	0.44	35	44174	47	2	42	3	68
PDB_01020	Purine links to Rfam database...	0.86	0.83	0.90	19	2257	4	2	0	2	4
PDB_01073	SAM links to Rfam database...	0.77	0.68	0.88	23	4345	4	2	1	1	11
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.85	365	1471040	119	5	60	54	182
PDB_01092	glmS links to Rfam database...	0.68	0.56	0.83	29	10118	8	0	6	2	23
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.76	0.67	0.86	376	1606090	108	8	54	46	186
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.77	0.70	0.86	376	1433534	108	3	58	47	164
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.73	0.86	387	1204680	102	10	51	41	140
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.86	368	1117832	112	8	52	52	123
RFA_00597	Telomerase-vert links to Rfam database...	0.75	0.72	0.80	78	97805	27	2	18	7	31
RFA_00598	Telomerase-vert links to Rfam database...	0.71	0.67	0.75	68	84575	39	2	21	16	33
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00600	Telomerase-vert links to Rfam database...	0.81	0.76	0.86	76	120207	25	2	10	13	24
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
RFA_00632	HDV_ribozyme links to Rfam database...	0.69	0.64	0.75	18	4071	6	2	4	0	10
RFA_00636	HDV_ribozyme links to Rfam database...	0.73	0.68	0.79	19	3981	5	2	3	0	9
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	3	1	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	3	1	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	2002	4	3	1	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00808	RydC links to Rfam database...	0.71	0.56	0.90	9	2006	1	1	0	0	7
RFA_00809	RydC links to Rfam database...	0.47	0.38	0.60	6	2135	4	0	4	0	10
TMR_00173	tmRNA links to Rfam database...	0.37	0.31	0.45	13	42166	39	2	14	23	29
TMR_00357	tmRNA links to Rfam database...	0.52	0.45	0.60	41	82960	33	9	18	6	51
TMR_00601	tmRNA links to Rfam database...	0.65	0.62	0.68	26	58958	50	2	10	38	16
TMR_00696	tmRNA links to Rfam database...	0.56	0.44	0.70	50	85007	29	1	20	8	64

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	12528
Total TN	88739512
Total FP	10116
Total FP CONTRA	1293
Total FP INCONS	7199
Total FP COMP	1624
Total FN	43951

Total Scores
MCC	0.363
Average MCC ± 95% Confidence Intervals	0.136 ± 0.024
Sensitivity	0.222
Positive Predictive Value	0.596
Nr of predictions	354

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.13	0.04	0.35	6	80584	11	0	11	0	128
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83008	21	3	17	1	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78605	1	0	1	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	59677	6	1	5	0	108
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86724	12	2	10	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70496	6	0	4	2	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	61418	2	0	2	0	107
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00057	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.17	2	82203	11	0	10	1	132
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83022	6	1	5	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.20	0.07	0.62	8	64607	5	0	5	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82213	2	1	1	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117845	10	0	10	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64254	7	0	7	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.13	0.03	0.50	4	73145	4	0	4	0	123
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46969	2	2	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40468	2	0	2	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00142	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.25	2	67153	6	0	6	0	120
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	54605	7	0	7	0	99
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63180	13	1	9	3	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73523	15	0	13	2	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.06	0.03	0.13	3	67873	20	6	14	0	109
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.12	0.04	0.40	4	61065	6	0	6	0	108
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	62474	4	0	4	0	111
ASE_00250	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.30	3	78993	7	0	7	0	128
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00259	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	3	73147	3	0	3	0	118
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44548	3	0	3	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80184	21	0	16	5	118
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57285	6	1	5	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75451	19	1	14	4	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80192	8	0	8	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57968	2	0	2	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57628	2	0	2	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48823	6	0	5	1	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00412	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	58305	5	1	4	0	104
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.04	0.50	4	56945	4	0	4	0	105
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	346	1085169	116	15	71	30	112
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.74	268	1170853	120	15	79	26	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.66	0.59	0.75	269	1107457	114	15	75	24	187
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1172394	120	18	77	25	216
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	258	1181594	124	19	82	23	218
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	261	1108955	113	16	73	24	196
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.66	0.57	0.75	267	1178524	119	14	75	30	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	273	1135921	112	13	71	28	190
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1201662	126	16	87	23	216
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.74	270	1152558	117	19	74	24	196
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.74	252	1180075	110	15	74	21	219
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	258	1190849	118	11	78	29	210
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.62	0.55	0.71	243	1082316	119	17	80	22	202
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.67	0.58	0.77	274	1178524	103	15	67	21	199
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1207883	117	16	79	22	218
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	257	1198565	127	16	88	23	221
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	248	1105984	121	17	79	25	205
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	278	1218768	123	17	78	28	206
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.74	285	1198543	124	18	80	26	193
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	251	1192392	119	17	80	22	217
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	255	1111941	113	15	75	23	200
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.73	243	1122417	115	15	76	24	219
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	250	1085260	113	15	76	22	196
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.72	249	1114926	120	15	81	24	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.61	0.52	0.72	235	1110468	113	17	75	21	218
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	240	1117918	122	15	87	20	213
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.56	0.74	260	1144991	117	12	78	27	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.68	180	1015761	96	14	70	12	252
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.70	240	1189312	122	16	85	21	236
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.55	0.43	0.72	196	1123976	99	12	66	21	265
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445558	306	53	239	14	462
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1579464	301	50	239	12	482
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1611598	319	50	262	7	496
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126581	414	77	295	42	534
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615206	309	45	252	12	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1665933	312	53	239	20	495
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	252	1116423	114	13	77	24	206
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.74	236	1094141	110	9	74	27	209
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	245	1119432	103	8	71	24	207
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.76	258	1098562	118	11	72	35	188
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56279	1	0	1	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165014	28	5	6	17	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150964	27	4	7	16	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153172	32	5	4	23	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129777	25	6	12	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	1	0	0	1	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1636859	310	50	235	25	480
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.79	217	1215744	86	5	54	27	229
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.59	0.48	0.73	185	1201773	99	7	60	32	199
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	249	1137451	114	13	73	28	198
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.72	184	1152666	117	7	64	46	210
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.73	232	1117943	100	11	74	15	238
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	123	14	87	22	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606225	319	65	238	16	503
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1593701	318	50	254	14	506
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.52	0.41	0.68	177	977639	95	12	73	10	257
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.71	0.57	0.89	8	937	1	0	1	0	6
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.76	261	1073500	115	11	73	31	234
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.60	0.48	0.76	259	1500435	126	9	75	42	276
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01020	Purine links to Rfam database...	0.76	0.65	0.88	15	2261	2	2	0	0	8
PDB_01073	SAM links to Rfam database...	0.39	0.18	0.86	6	4364	1	0	1	0	28
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	259	1471129	122	8	74	40	288
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	266	1606178	119	12	72	35	296
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.76	268	1433617	119	7	79	33	272
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.53	0.78	280	1204768	120	9	71	40	247
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.65	0.55	0.76	272	1117903	116	13	72	31	219
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84655	11	0	11	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120278	17	1	16	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
TMR_00173	tmRNA links to Rfam database...	0.30	0.17	0.54	7	42182	6	2	4	0	35
TMR_00357	tmRNA links to Rfam database...	0.25	0.09	0.73	8	83017	3	0	3	0	84
TMR_00601	tmRNA links to Rfam database...	0.30	0.19	0.47	8	58979	9	2	7	0	34
TMR_00696	tmRNA links to Rfam database...	0.24	0.07	0.80	8	85068	2	0	2	0	106

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]