CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PPfold(20)		RNAsubopt
MCC	0.735	>	0.520
Average MCC ± 95% Confidence Intervals	0.737 ± 0.013	>	0.521 ± 0.023
Sensitivity	0.635	>	0.518
Positive Predictive Value	0.851	>	0.523
Total TP	13225	>	10783
Total TN	11998571	>	11993511
Total FP	3193	<	10809
Total FP CONTRA	578	<	1345
Total FP INCONS	1740	<	8475
Total FP COMP	875	<	989
Total FN	7595	<	10037
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PPfold(20) and RNAsubopt. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PPfold(20) and RNAsubopt).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PPfold(20) and RNAsubopt).
Comparison of average Matthews Correlation Coefficients (MCCs) for PPfold(20) and RNAsubopt. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PPfold(20) and RNAsubopt).

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Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

Total Base Pair Counts
Total TP	13225
Total TN	11998571
Total FP	3193
Total FP CONTRA	578
Total FP INCONS	1740
Total FP COMP	875
Total FN	7595

Total Scores
MCC	0.735
Average MCC ± 95% Confidence Intervals	0.737 ± 0.013
Sensitivity	0.635
Positive Predictive Value	0.851
Nr of predictions	202

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2. Individual counts for PPfold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	17	1	13	3	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	75	57885	13	3	7	3	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	56	47516	16	1	13	2	37
ASE_00007	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	89	59585	15	2	9	4	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	83	73819	24	4	14	6	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	89	80502	14	3	7	4	45
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.84	66	73841	19	6	7	6	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	70	104095	36	5	26	5	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.78	0.69	0.87	86	82929	22	1	12	9	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	81	84573	20	1	11	8	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	86	70402	19	1	11	7	32
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	89	59243	13	1	7	5	21
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	95	78900	10	3	5	2	38
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	18	2	13	3	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	82	89998	23	2	18	3	63
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	90	54517	10	2	6	2	15
ASE_00064	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45376	15	1	9	5	24
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	17	5	10	2	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	67796	12	1	6	5	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.72	72	108711	35	5	23	7	90
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	71	45069	14	5	5	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	72	42995	11	1	3	7	11
ASE_00080	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.57	43	71555	36	2	31	3	80
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	71	49693	9	2	4	3	26
ASE_00082	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	60	70426	22	1	13	8	56
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.89	68	62405	13	3	5	5	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	64	53552	16	2	10	4	35
ASE_00090	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	68	55536	11	2	5	4	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	60	63470	21	3	13	5	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	64520	11	2	5	4	27
ASE_00104	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	91	64161	15	1	8	6	28
ASE_00105	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	56	64181	29	6	18	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.75	0.92	95	73050	11	2	6	3	32
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	61	60652	17	2	11	4	41
ASE_00119	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.92	58	62772	8	2	3	3	50
ASE_00123	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	38442	14	3	8	3	35
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	53	39279	14	2	6	6	35
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	65	40398	13	2	5	6	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	70	53225	10	2	4	4	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	72	62757	9	3	3	3	39
ASE_00131	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	53	39281	12	2	4	6	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	65	50325	16	1	12	3	30
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	59	63110	24	3	18	3	50
ASE_00136	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	66	48130	12	2	7	3	26
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	65	48449	7	1	1	5	33
ASE_00138	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	63	40401	10	2	4	4	18
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	69	70796	17	7	4	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	90	67064	13	2	5	6	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	88	70780	13	1	7	5	36
ASE_00153	RNaseP_nuc links to Rfam database...	0.43	0.37	0.50	27	57576	32	4	23	5	46
ASE_00163	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	71	53222	12	1	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	52904	10	2	2	6	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	61	48752	20	2	13	5	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	70	48439	11	3	4	4	24
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	69	58920	10	3	4	3	37
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	59	61001	18	3	12	3	50
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.85	68	59951	17	3	9	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	44176	15	5	5	5	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	69	51282	12	3	6	3	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.83	63	57554	18	4	9	5	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	72	84175	11	3	5	3	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	73	61344	12	2	6	4	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	69	54536	13	2	8	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.90	66	73463	12	3	4	5	62
ASE_00186	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	79	78904	24	3	17	4	53
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	58	45384	12	1	8	3	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	80	89154	24	2	17	5	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	71	52573	9	1	5	3	31
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	46588	13	3	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	78	93867	20	2	14	4	70
ASE_00214	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	68	56205	11	3	4	4	35
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.82	46	48460	13	2	8	3	53
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	69	39270	5	1	0	4	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.91	69	40394	11	2	5	4	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	91	64522	10	1	6	3	26
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.79	0.97	69	42415	5	2	0	3	18
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	1	15	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.89	0.82	0.97	69	38432	6	1	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	68	75384	20	6	8	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	64181	22	5	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.87	68	43878	14	1	9	4	19
ASE_00242	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	92	60973	15	1	9	5	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.91	92	62380	13	1	8	4	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.94	63	36789	8	2	2	4	19
ASE_00255	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	72	74589	32	4	26	2	58
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	63	50963	17	4	10	3	34
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	68	70422	14	3	7	4	52
ASE_00267	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	68	45075	13	2	5	6	20
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.79	55	72320	19	2	13	4	73
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	21	5	13	3	41
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	11	3	5	3	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	65	51924	17	3	11	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	66	44475	12	3	7	2	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	69	77738	12	2	6	4	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.86	67	61698	14	2	9	3	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	71	58233	11	4	3	4	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.91	67	68932	11	2	5	4	55
ASE_00286	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	67	46590	12	2	6	4	25
ASE_00287	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	62	54868	20	1	15	4	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	86	81707	20	2	15	3	52
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	97	114375	13	2	7	4	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	88	91704	18	4	10	4	57
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.79	57	52903	19	4	11	4	41
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00318	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.85	78	80108	21	1	13	7	40
ASE_00328	RNaseP_bact_b links to Rfam database...	0.81	0.75	0.88	84	72675	19	1	11	7	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	92	81709	12	3	6	3	46
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.70	0.85	81	75371	25	1	13	11	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	57	45989	17	1	9	7	28
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	95	62382	9	1	3	5	20
ASE_00353	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	68	57893	14	2	7	5	39
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	67	75391	13	3	5	5	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	65	48132	14	2	6	6	26
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	64	51284	17	2	10	5	30
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	15	3	7	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	66	58577	13	3	7	3	32
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	68	42996	11	2	5	4	18
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	74	55863	13	1	7	5	33
ASE_00372	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	65	51929	15	1	8	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.93	70	44775	8	2	3	3	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	66	56875	15	1	11	3	39
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	41828	16	2	8	6	17
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	13	1	7	5	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	68	48440	13	2	6	5	24
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	68	50326	12	2	7	3	28
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.83	64	55868	17	2	11	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45678	16	1	9	6	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	11	2	6	3	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.82	63	47818	19	1	13	5	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	69	46896	10	2	4	4	24
ASE_00395	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	66	41540	13	2	8	3	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	69	41539	12	3	5	4	14
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	67	54539	15	3	6	6	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	55870	13	1	9	3	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	71	57893	12	1	5	6	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.88	64	76955	13	2	7	4	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42410	12	2	6	4	17
ASE_00403	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	72	55867	12	1	5	6	35
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42995	14	4	4	6	17
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	48749	14	2	9	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.72	60	49372	27	7	16	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	57	58231	28	5	18	5	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.79	59	44476	23	4	12	7	22
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	84	77319	23	4	14	5	43
ASE_00419	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	63	54871	16	5	7	4	40
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	46895	13	1	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	77	56857	23	3	16	4	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	85	76533	21	4	14	3	40
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	64	46896	14	1	10	3	33
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	1	29	3	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	13	3	7	3	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	88	64160	15	3	10	2	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	91	70776	12	1	8	3	34
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	2	0	0	2	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.80	0.93	89	101379	16	3	4	9	22
RFA_00601	Telomerase-vert links to Rfam database...	0.77	0.68	0.89	77	99148	20	1	9	10	37
TMR_00017	tmRNA links to Rfam database...	0.71	0.55	0.92	56	67100	8	1	4	3	46
TMR_00018	tmRNA links to Rfam database...	0.63	0.52	0.76	48	64557	21	6	9	6	44
TMR_00038	tmRNA links to Rfam database...	0.61	0.52	0.73	57	71175	26	5	16	5	53
TMR_00042	tmRNA links to Rfam database...	0.62	0.49	0.79	48	62774	13	4	9	0	50
TMR_00046	tmRNA links to Rfam database...	0.46	0.36	0.58	35	62775	26	4	21	1	61
TMR_00048	tmRNA links to Rfam database...	0.63	0.52	0.77	49	64916	16	7	8	1	46
TMR_00080	tmRNA links to Rfam database...	0.64	0.51	0.80	49	70439	13	7	5	1	47
TMR_00082	tmRNA links to Rfam database...	0.57	0.45	0.73	43	67837	20	6	10	4	53
TMR_00123	tmRNA links to Rfam database...	0.68	0.52	0.88	53	66370	12	1	6	5	48
TMR_00137	tmRNA links to Rfam database...	0.69	0.60	0.79	53	61008	20	7	7	6	36
TMR_00142	tmRNA links to Rfam database...	0.50	0.40	0.61	41	70809	31	10	16	5	61
TMR_00207	tmRNA links to Rfam database...	0.60	0.45	0.81	46	72333	18	1	10	7	57
TMR_00257	tmRNA links to Rfam database...	0.71	0.58	0.88	57	67096	13	3	5	5	41
TMR_00271	tmRNA links to Rfam database...	0.59	0.48	0.72	44	64200	19	6	11	2	47
TMR_00332	tmRNA links to Rfam database...	0.70	0.56	0.89	55	67099	12	2	5	5	44
TMR_00366	tmRNA links to Rfam database...	0.48	0.41	0.57	41	67824	35	9	22	4	59
TMR_00378	tmRNA links to Rfam database...	0.50	0.41	0.62	40	67831	34	8	17	9	57
TMR_00399	tmRNA links to Rfam database...	0.70	0.61	0.81	57	64910	21	6	7	8	37
TMR_00404	tmRNA links to Rfam database...	0.54	0.45	0.66	41	67466	22	8	13	1	51
TMR_00427	tmRNA links to Rfam database...	0.56	0.43	0.74	42	67471	15	9	6	0	55
TMR_00443	tmRNA links to Rfam database...	0.76	0.63	0.93	65	67091	11	2	3	6	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	32	11	13	8	44
TMR_00458	tmRNA links to Rfam database...	0.67	0.57	0.78	53	63478	19	7	8	4	40
TMR_00469	tmRNA links to Rfam database...	0.73	0.61	0.88	61	64551	11	4	4	3	39
TMR_00472	tmRNA links to Rfam database...	0.67	0.58	0.79	56	64549	19	9	6	4	41
TMR_00519	tmRNA links to Rfam database...	0.63	0.54	0.74	51	63121	25	7	11	7	44
TMR_00520	tmRNA links to Rfam database...	0.65	0.55	0.78	54	63121	18	1	14	3	45
TMR_00522	tmRNA links to Rfam database...	0.62	0.51	0.77	49	63126	19	6	9	4	48
TMR_00528	tmRNA links to Rfam database...	0.62	0.51	0.75	49	63125	20	5	11	4	48
TMR_00540	tmRNA links to Rfam database...	0.69	0.58	0.83	60	73464	14	7	5	2	44
TMR_00568	tmRNA links to Rfam database...	0.75	0.66	0.87	65	60651	16	2	8	6	34
TMR_00571	tmRNA links to Rfam database...	0.77	0.68	0.88	67	60650	15	2	7	6	32
TMR_00580	tmRNA links to Rfam database...	0.76	0.65	0.88	65	60652	15	2	7	6	35
TMR_00584	tmRNA links to Rfam database...	0.78	0.66	0.93	64	61006	13	2	3	8	33
TMR_00586	tmRNA links to Rfam database...	0.72	0.63	0.82	61	61001	19	5	8	6	36
TMR_00616	tmRNA links to Rfam database...	0.68	0.57	0.81	56	67092	17	7	6	4	43
TMR_00699	tmRNA links to Rfam database...	0.69	0.54	0.87	55	67098	9	1	7	1	47
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	17	3	9	5	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.59	0.87	58	67461	14	3	6	5	41

^top

Performance of RNAsubopt - scored lower in this pairwise comparison

1. Total counts & total scores for RNAsubopt

Total Base Pair Counts
Total TP	10783
Total TN	11993511
Total FP	10809
Total FP CONTRA	1345
Total FP INCONS	8475
Total FP COMP	989
Total FN	10037

Total Scores
MCC	0.520
Average MCC ± 95% Confidence Intervals	0.521 ± 0.023
Sensitivity	0.518
Positive Predictive Value	0.523
Nr of predictions	202

^top

2. Individual counts for RNAsubopt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.78	0.78	0.78	76	47798	22	2	19	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	62	57861	51	2	45	4	55
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	52	47489	46	5	40	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.37	41	59575	71	1	68	2	69
ASE_00012	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.44	53	73800	71	10	57	4	70
ASE_00018	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	86	80479	39	1	35	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	59	73795	66	10	56	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	86	104048	66	9	53	4	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.47	0.48	0.47	59	82903	73	6	60	7	65
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.67	0.72	85	84548	42	6	27	9	41
ASE_00035	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	42	70389	76	11	58	7	76
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	44	59242	57	1	53	3	66
ASE_00040	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	47	78876	88	4	76	8	86
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.56	57	57528	50	2	43	5	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	83	89968	50	4	45	1	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.70	0.70	73	54510	36	3	29	4	32
ASE_00064	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.35	34	45353	68	8	56	4	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	37597	35	0	34	1	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	69	67777	50	6	44	0	50
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	101	108670	45	4	36	5	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	24	45065	66	8	53	5	62
ASE_00078	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	57	42988	31	5	21	5	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	51	71514	69	8	58	3	72
ASE_00081	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	53	49681	41	0	36	5	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	51	70389	70	5	55	10	65
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	81	62377	30	2	21	7	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	59	53532	45	2	35	8	40
ASE_00090	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.51	55	55503	57	4	49	4	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	63433	36	4	27	5	31
ASE_00099	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	75	64508	42	2	35	5	45
ASE_00104	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	61	64155	49	3	42	4	58
ASE_00105	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	34	64151	81	9	67	5	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.69	80	73037	39	1	35	3	47
ASE_00115	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	63	54514	45	4	34	7	38
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	56	60625	52	3	42	7	46
ASE_00119	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.70	78	62723	36	4	30	2	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	46	38425	37	2	30	5	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	55	39254	36	5	26	5	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.80	0.76	66	40383	28	4	17	7	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.70	69	53203	37	3	26	8	31
ASE_00129	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.75	82	62726	30	3	24	3	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	43	39270	37	1	26	10	42
ASE_00134	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.35	32	50311	65	4	56	5	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	49	63081	66	9	51	6	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	47	48118	49	1	39	9	45
ASE_00137	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	54	48423	45	3	36	6	44
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	44	40394	32	0	32	0	37
ASE_00140	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	66	70765	45	6	39	0	59
ASE_00142	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	59	67044	60	7	51	2	63
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	66	70766	50	1	43	6	58
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	66	2	24	40	23
ASE_00163	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.39	36	53209	65	6	50	9	57
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	65	52879	32	5	26	1	36
ASE_00170	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	61	48739	35	2	26	7	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.66	63	48420	33	5	28	0	31
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.60	67	58885	44	5	39	0	39
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	56	60967	54	6	46	2	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	68	59929	40	3	31	6	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.66	0.68	0.64	57	44164	32	7	25	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.65	64	51262	39	3	31	5	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.54	58	57523	53	4	45	4	48
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	64	84125	66	4	62	0	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	82	61313	35	3	27	5	31
ASE_00184	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.61	65	54509	41	10	31	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.71	85	73416	38	7	28	3	43
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	97	78878	34	3	25	6	35
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.56	0.58	50	45365	42	7	29	6	40
ASE_00197	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	95	89120	42	3	35	4	50
ASE_00198	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	66	52549	41	6	29	6	36
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.77	72	46571	25	4	18	3	24
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	96	93822	48	4	39	5	52
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.74	73	56182	32	4	21	7	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	38	48425	53	2	51	0	61
ASE_00216	RNaseP_bact_a links to Rfam database...	0.61	0.62	0.59	51	39254	36	7	28	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	48	3	38	7	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	61	64510	53	1	48	4	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.60	0.63	0.58	54	46878	39	14	25	0	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.73	63	42400	28	5	18	5	24
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.67	0.64	64	47795	36	5	31	0	32
ASE_00232	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	52	38419	33	4	28	1	32
ASE_00234	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	44	75350	76	7	65	4	85
ASE_00238	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.42	48	64146	70	6	61	3	66
ASE_00241	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.49	46	43862	48	10	38	0	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	51	60966	60	5	53	2	61
ASE_00248	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	67	62373	45	1	40	4	47
ASE_00254	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	33	36777	50	4	42	4	49
ASE_00255	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	85	74571	41	3	32	6	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50945	50	4	37	9	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.76	92	70379	31	7	22	2	28
ASE_00267	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	45071	37	4	25	8	38
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.76	91	72271	35	1	27	7	37
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	51	55510	50	10	40	0	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	73	53202	33	3	23	7	28
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	65	51907	39	4	27	8	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	39	44462	51	5	45	1	49
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	70	4	65	1	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	84	61676	25	2	14	9	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.51	54	58206	58	6	45	7	54
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	80	68896	38	2	28	8	42
ASE_00286	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	45	46575	50	2	43	5	47
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	71	54852	32	2	21	9	32
ASE_00292	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	83	81685	47	1	41	5	55
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	104	114329	52	0	48	4	67
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	42	91664	100	6	94	0	103
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.65	65	52875	38	7	28	3	33
ASE_00298	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	51	67422	60	9	46	5	62
ASE_00318	RNaseP_bact_b links to Rfam database...	0.62	0.62	0.61	73	80081	50	14	32	4	45
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	75	5	61	9	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	71	81678	63	2	59	2	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.42	0.42	0.42	49	75348	79	12	57	10	67
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.76	64	45972	29	6	14	9	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	59	62377	48	2	43	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.49	55	57857	59	11	47	1	52
ASE_00361	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	41	75346	82	10	69	3	86
ASE_00362	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	52	48114	46	4	35	7	39
ASE_00363	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	51267	60	2	52	6	55
ASE_00364	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	57	54181	51	6	41	4	48
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.54	0.47	53	58541	60	10	49	1	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.30	27	42981	68	7	56	5	59
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	62	55835	48	3	45	0	45
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	34	5	25	4	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.65	0.66	0.64	58	44759	33	7	26	0	30
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	56850	52	4	45	3	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.81	0.80	0.81	86	57524	26	3	17	6	21
ASE_00382	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	34	41821	53	6	44	3	50
ASE_00383	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	60	54517	43	3	35	5	45
ASE_00384	RNaseP_bact_a links to Rfam database...	0.68	0.70	0.67	64	48420	37	5	27	5	28
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	54	50300	54	4	45	5	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	64	55844	43	1	36	6	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.63	0.60	56	45659	40	2	36	2	33
ASE_00390	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	39	42116	50	6	34	10	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	49	47804	48	1	41	6	44
ASE_00394	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.69	66	46875	32	3	27	2	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	46	41534	43	2	34	7	38
ASE_00396	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	30	41529	62	11	46	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	53	54510	52	7	45	0	52
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	65	55844	40	2	34	4	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	59	57865	47	10	36	1	47
ASE_00401	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	70	76892	66	13	53	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	36	42403	52	5	42	5	49
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.40	42	55839	64	3	61	0	65
ASE_00404	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.36	30	42987	62	1	53	8	55
ASE_00406	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48737	27	8	17	2	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	27	49367	66	6	55	5	62
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	47	58210	57	9	45	3	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.59	0.54	48	44462	44	11	30	3	33
ASE_00416	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.58	68	77303	56	9	41	6	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	75	54844	31	5	22	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	46	46876	55	5	44	6	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	63	56848	45	7	35	3	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	82	76519	42	3	32	7	43
ASE_00430	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	60	46874	42	7	30	5	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	57	79278	66	4	62	0	78
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	83	64158	33	4	16	13	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	56	64154	61	7	44	10	56
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	74	70761	44	1	40	3	51
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.23	5	3299	17	6	11	0	20
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
RFA_00599	Telomerase-vert links to Rfam database...	0.66	0.70	0.63	78	101351	67	17	29	21	33
RFA_00601	Telomerase-vert links to Rfam database...	0.22	0.25	0.20	28	99098	124	19	90	15	86
TMR_00017	tmRNA links to Rfam database...	0.36	0.38	0.35	39	67049	79	17	56	6	63
TMR_00018	tmRNA links to Rfam database...	0.12	0.13	0.12	12	64521	93	11	76	6	80
TMR_00038	tmRNA links to Rfam database...	0.23	0.24	0.22	26	71136	95	11	80	4	84
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.52	53	62734	54	12	36	6	43
TMR_00048	tmRNA links to Rfam database...	0.22	0.24	0.20	23	64866	96	16	75	5	72
TMR_00080	tmRNA links to Rfam database...	0.33	0.33	0.32	32	70401	67	19	48	0	64
TMR_00082	tmRNA links to Rfam database...	0.41	0.42	0.40	40	67795	65	19	42	4	56
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00137	tmRNA links to Rfam database...	0.16	0.18	0.15	16	60971	92	19	69	4	73
TMR_00142	tmRNA links to Rfam database...	0.50	0.52	0.49	53	70767	66	16	40	10	49
TMR_00207	tmRNA links to Rfam database...	0.40	0.41	0.40	42	72286	69	9	53	7	61
TMR_00257	tmRNA links to Rfam database...	0.12	0.12	0.13	12	67066	89	7	76	6	86
TMR_00271	tmRNA links to Rfam database...	0.38	0.40	0.37	36	64163	71	13	49	9	55
TMR_00332	tmRNA links to Rfam database...	0.48	0.47	0.49	47	67065	53	12	37	4	52
TMR_00366	tmRNA links to Rfam database...	0.27	0.28	0.27	28	67791	90	16	61	13	72
TMR_00378	tmRNA links to Rfam database...	0.13	0.14	0.13	14	67784	109	18	80	11	83
TMR_00399	tmRNA links to Rfam database...	0.17	0.18	0.15	17	64869	98	27	67	4	77
TMR_00404	tmRNA links to Rfam database...	0.29	0.32	0.27	29	67420	90	24	55	11	63
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67431	74	9	58	7	67
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.45	47	67056	60	15	43	2	57
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00458	tmRNA links to Rfam database...	0.36	0.37	0.37	34	63453	68	11	48	9	59
TMR_00469	tmRNA links to Rfam database...	0.48	0.51	0.46	51	64508	66	21	40	5	49
TMR_00472	tmRNA links to Rfam database...	0.59	0.58	0.60	56	64526	52	7	31	14	41
TMR_00519	tmRNA links to Rfam database...	0.20	0.21	0.19	20	63083	97	18	69	10	75
TMR_00520	tmRNA links to Rfam database...	0.33	0.35	0.32	35	63080	85	13	62	10	64
TMR_00522	tmRNA links to Rfam database...	0.46	0.47	0.45	46	63088	65	12	44	9	51
TMR_00528	tmRNA links to Rfam database...	0.34	0.34	0.34	33	63093	75	13	51	11	64
TMR_00540	tmRNA links to Rfam database...	0.24	0.24	0.24	25	73433	82	12	66	4	79
TMR_00568	tmRNA links to Rfam database...	0.26	0.27	0.25	27	60617	88	12	70	6	72
TMR_00571	tmRNA links to Rfam database...	0.28	0.29	0.28	29	60621	84	12	64	8	70
TMR_00580	tmRNA links to Rfam database...	0.31	0.31	0.30	31	60624	78	15	56	7	69
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60966	74	9	59	6	56
TMR_00586	tmRNA links to Rfam database...	0.36	0.37	0.35	36	60972	68	12	55	1	61
TMR_00616	tmRNA links to Rfam database...	0.26	0.27	0.25	27	67055	83	21	58	4	72
TMR_00699	tmRNA links to Rfam database...	0.33	0.34	0.32	35	67053	77	12	61	4	67
TMR_00702	tmRNA links to Rfam database...	0.56	0.57	0.55	57	67057	52	15	32	5	43
TMR_00703	tmRNA links to Rfam database...	0.26	0.26	0.25	26	67426	82	9	67	6	73

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

2. Individual counts for PPfold(20) [ download as .csv ]

Performance of RNAsubopt - scored lower in this pairwise comparison

1. Total counts & total scores for RNAsubopt

2. Individual counts for RNAsubopt [ download as .csv ]