CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		CMfinder(20)
MCC	0.587	>	0.482
Average MCC ± 95% Confidence Intervals	0.591 ± 0.021	>	0.484 ± 0.018
Sensitivity	0.565	>	0.310
Positive Predictive Value	0.611	<	0.749
Total TP	12182	>	6683
Total TN	12428806	<	12439819
Total FP	9114	>	2540
Total FP CONTRA	1228	>	195
Total FP INCONS	6523	>	2042
Total FP COMP	1363	>	303
Total FN	9366	<	14865
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and CMfinder(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and CMfinder(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	12182
Total TN	12428806
Total FP	9114
Total FP CONTRA	1228
Total FP INCONS	6523
Total FP COMP	1363
Total FN	9366

Total Scores
MCC	0.587
Average MCC ± 95% Confidence Intervals	0.591 ± 0.021
Sensitivity	0.565
Positive Predictive Value	0.611
Nr of predictions	209

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	63	40391	23	1	15	7	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	77	61318	37	3	27	7	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	77	52561	19	3	9	7	25
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
PDB_00571	tRNA links to Rfam database...	0.60	0.60	0.60	15	3296	10	6	4	0	10
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
TMR_00017	tmRNA links to Rfam database...	0.50	0.49	0.51	50	67062	55	11	38	6	52
TMR_00018	tmRNA links to Rfam database...	0.34	0.36	0.32	33	64516	76	17	54	5	59
TMR_00038	tmRNA links to Rfam database...	0.22	0.22	0.23	24	71147	87	13	69	5	86
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.33	34	62733	71	6	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.27	27	62734	81	11	63	7	69
TMR_00048	tmRNA links to Rfam database...	0.26	0.27	0.24	26	64873	87	15	66	6	69
TMR_00080	tmRNA links to Rfam database...	0.39	0.40	0.38	38	70401	62	18	43	1	58
TMR_00082	tmRNA links to Rfam database...	0.69	0.71	0.67	68	67795	38	16	17	5	28
TMR_00123	tmRNA links to Rfam database...	0.46	0.48	0.45	48	66324	63	13	45	5	53
TMR_00137	tmRNA links to Rfam database...	0.24	0.25	0.24	22	60983	79	12	58	9	67
TMR_00142	tmRNA links to Rfam database...	0.55	0.56	0.55	57	70772	62	10	37	15	45
TMR_00207	tmRNA links to Rfam database...	0.34	0.35	0.33	36	72280	79	10	64	5	67
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.13	11	67074	81	6	70	5	87
TMR_00271	tmRNA links to Rfam database...	0.59	0.56	0.61	51	64178	43	9	23	11	40
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	47	10	31	6	49
TMR_00366	tmRNA links to Rfam database...	0.57	0.55	0.59	55	67803	49	8	30	11	45
TMR_00378	tmRNA links to Rfam database...	0.26	0.28	0.25	27	67786	94	24	59	11	70
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64891	64	12	45	7	62
TMR_00404	tmRNA links to Rfam database...	0.36	0.40	0.33	37	67416	86	29	46	11	55
TMR_00427	tmRNA links to Rfam database...	0.46	0.44	0.48	43	67439	54	11	35	8	54
TMR_00443	tmRNA links to Rfam database...	0.50	0.48	0.53	50	67066	52	13	32	7	54
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63445	88	21	63	4	72
TMR_00458	tmRNA links to Rfam database...	0.46	0.44	0.47	41	63459	54	11	35	8	52
TMR_00469	tmRNA links to Rfam database...	0.51	0.53	0.50	53	64514	57	18	35	4	47
TMR_00472	tmRNA links to Rfam database...	0.46	0.45	0.46	44	64524	64	10	42	12	53
TMR_00519	tmRNA links to Rfam database...	0.40	0.38	0.42	36	63105	64	10	39	15	59
TMR_00520	tmRNA links to Rfam database...	0.51	0.49	0.52	49	63096	56	15	30	11	50
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.38	38	63091	70	16	45	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.31	28	63099	73	18	45	10	69
TMR_00540	tmRNA links to Rfam database...	0.36	0.35	0.37	36	73438	74	14	48	12	68
TMR_00568	tmRNA links to Rfam database...	0.31	0.30	0.31	30	60629	73	6	61	6	69
TMR_00571	tmRNA links to Rfam database...	0.62	0.61	0.64	60	60632	46	6	28	12	39
TMR_00580	tmRNA links to Rfam database...	0.69	0.66	0.72	66	60634	37	3	23	11	34
TMR_00584	tmRNA links to Rfam database...	0.58	0.57	0.59	55	60982	53	5	33	15	42
TMR_00586	tmRNA links to Rfam database...	0.52	0.51	0.54	49	60984	52	8	34	10	48
TMR_00616	tmRNA links to Rfam database...	0.39	0.40	0.38	40	67057	69	13	51	5	59
TMR_00699	tmRNA links to Rfam database...	0.45	0.42	0.48	43	67072	52	7	39	6	59
TMR_00702	tmRNA links to Rfam database...	0.40	0.38	0.42	38	67071	58	13	39	6	62
TMR_00703	tmRNA links to Rfam database...	0.48	0.47	0.48	47	67430	56	11	40	5	52

^top

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP	6683
Total TN	12439819
Total FP	2540
Total FP CONTRA	195
Total FP INCONS	2042
Total FP COMP	303
Total FN	14865

Total Scores
MCC	0.482
Average MCC ± 95% Confidence Intervals	0.484 ± 0.018
Sensitivity	0.310
Positive Predictive Value	0.749
Nr of predictions	209

^top

2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.29	0.88	28	47863	4	0	4	0	69
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.26	0.67	30	57925	15	0	15	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	37	47536	13	1	12	0	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	53	59623	11	1	8	2	57
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.96	22	73897	1	0	1	0	101
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	54	80529	20	1	17	2	80
ASE_00020	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.68	30	73876	16	1	13	2	96
ASE_00021	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.80	28	104161	7	1	6	0	132
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.28	0.71	35	82979	14	1	13	0	89
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.41	0.84	52	84604	11	3	7	1	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.46	0.29	0.74	34	70454	12	1	11	0	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	46	59276	18	0	18	0	64
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.73	37	53577	14	1	13	0	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.80	32	78963	9	1	7	1	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	41	57577	12	0	12	0	67
ASE_00042	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.90	26	90071	3	0	3	0	119
ASE_00044	RNaseP_bact_a links to Rfam database...	0.45	0.29	0.71	30	54573	13	0	12	1	75
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.75	27	45415	10	1	8	1	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	37	37632	6	0	6	0	48
ASE_00074	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	52	67839	6	0	5	1	67
ASE_00075	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.80	28	108776	7	1	6	0	134
ASE_00077	RNaseP_bact_a links to Rfam database...	0.59	0.36	0.97	31	45118	1	0	1	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	51	43010	11	1	9	1	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.24	0.58	30	71579	22	0	22	0	93
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.86	30	49735	6	0	5	1	67
ASE_00082	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.82	45	70445	17	0	10	7	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.91	30	62448	4	0	3	1	80
ASE_00084	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.69	34	53579	15	0	15	0	65
ASE_00087	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	30	88372	8	0	8	0	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.33	0.66	33	55561	18	0	17	1	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.81	42	63494	11	0	10	1	71
ASE_00099	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	48	64557	17	0	15	2	72
ASE_00104	RNaseP_bact_a links to Rfam database...	0.47	0.30	0.73	36	64212	14	0	13	1	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.78	25	64229	7	1	6	0	86
ASE_00107	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	57	73086	10	0	10	0	70
ASE_00115	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	54583	4	0	3	1	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	49	60670	9	1	6	2	53
ASE_00119	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	31	62789	17	3	12	2	77
ASE_00123	RNaseP_bact_a links to Rfam database...	0.45	0.28	0.71	24	38469	14	0	10	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	35	39294	12	1	10	1	53
ASE_00126	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	46	40411	14	0	13	1	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	53269	4	0	3	1	71
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.27	0.97	30	62804	1	0	1	0	81
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.83	29	39305	7	0	6	1	56
ASE_00134	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	0	10	1	49
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	37	63133	20	1	19	0	72
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.50	0.81	46	48148	13	0	11	2	46
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	49	48461	7	2	4	1	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	51	40411	9	1	7	1	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.69	22	70844	11	0	10	1	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	27	67133	3	0	1	2	95
ASE_00146	RNaseP_bact_a links to Rfam database...	0.52	0.38	0.70	47	70809	20	1	19	0	77
ASE_00153	RNaseP_nuc links to Rfam database...	0.09	0.05	0.16	4	57605	39	5	16	18	69
ASE_00163	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	50	53241	10	1	9	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.97	31	52943	1	0	1	0	70
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.83	30	48792	8	0	6	2	63
ASE_00171	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	45	48463	9	1	7	1	49
ASE_00172	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.74	40	58942	15	1	13	1	66
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.81	21	61049	5	2	3	0	88
ASE_00175	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.65	34	59979	18	0	18	0	73
ASE_00179	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.67	38	44196	19	3	16	0	46
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	57	51292	11	0	11	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	32	57591	8	0	7	1	74
ASE_00182	RNaseP_bact_a links to Rfam database...	0.40	0.26	0.64	35	84200	20	1	19	0	101
ASE_00183	RNaseP_bact_a links to Rfam database...	0.42	0.26	0.67	29	61382	14	0	14	0	84
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.86	48	54559	8	1	7	0	54
ASE_00185	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.70	23	73503	10	0	10	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.71	36	78952	15	0	15	0	96
ASE_00190	RNaseP_bact_b links to Rfam database...	0.32	0.18	0.57	16	45423	13	1	11	1	74
ASE_00197	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.78	38	89204	11	0	11	0	107
ASE_00198	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.84	47	52594	9	1	8	0	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	46636	6	2	4	0	73
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.27	0.69	40	93903	18	1	17	0	108
ASE_00214	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	48	56221	13	0	11	2	55
ASE_00215	RNaseP_bact_a links to Rfam database...	0.42	0.27	0.66	27	48475	15	0	14	1	72
ASE_00216	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.86	49	39283	8	5	3	0	33
ASE_00217	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	34	40426	12	0	10	2	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.80	45	64564	11	1	10	0	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	21	46941	10	2	7	1	65
ASE_00229	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.75	38	42435	14	0	13	1	49
ASE_00231	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	43	47843	9	2	7	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	47	38443	13	4	9	0	37
ASE_00234	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.74	35	75419	12	1	11	0	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	25	64235	1	0	1	0	89
ASE_00241	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	59	43889	8	0	8	0	28
ASE_00242	RNaseP_bact_a links to Rfam database...	0.58	0.41	0.81	46	61018	13	1	10	2	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.80	44	62426	11	1	10	0	70
ASE_00254	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	45	36797	14	3	11	0	37
ASE_00255	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.82	28	74657	6	1	5	0	102
ASE_00257	RNaseP_bact_a links to Rfam database...	0.51	0.36	0.73	35	50992	14	0	13	1	62
ASE_00263	RNaseP_bact_a links to Rfam database...	0.50	0.33	0.78	39	70450	12	0	11	1	81
ASE_00267	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.82	41	45100	10	0	9	1	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	35	72346	9	0	9	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.56	0.42	0.75	43	55554	14	1	13	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.89	25	48177	3	0	3	0	66
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.93	27	53272	2	0	2	0	74
ASE_00280	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.67	29	51960	15	0	14	1	69
ASE_00281	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.81	26	44519	6	0	6	0	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	38	77759	18	1	17	0	89
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	28	61742	8	0	6	2	79
ASE_00284	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	26	58274	11	0	11	0	82
ASE_00285	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.82	27	68973	6	0	6	0	95
ASE_00286	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	47	46610	9	0	8	1	45
ASE_00287	RNaseP_bact_a links to Rfam database...	0.44	0.31	0.63	32	54895	20	1	18	1	71
ASE_00292	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.72	48	81743	19	0	19	0	90
ASE_00294	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.74	32	114438	12	0	11	1	139
ASE_00296	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.67	26	91767	13	0	13	0	119
ASE_00297	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.65	24	52938	14	0	13	1	74
ASE_00298	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.75	43	67471	14	1	13	0	70
ASE_00318	RNaseP_bact_b links to Rfam database...	0.49	0.31	0.80	36	80155	10	3	6	1	82
ASE_00328	RNaseP_bact_b links to Rfam database...	0.48	0.34	0.69	38	72716	20	4	13	3	74
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.20	0.87	27	81779	4	0	4	0	111
ASE_00335	RNaseP_bact_b links to Rfam database...	0.46	0.32	0.67	37	75411	19	2	16	1	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	31	46006	19	5	14	0	54
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	47	62423	13	0	11	2	68
ASE_00353	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	42	57908	21	1	19	1	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	27	75430	10	1	8	1	100
ASE_00362	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.66	37	48149	19	0	19	0	54
ASE_00363	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.78	28	51324	9	4	4	1	66
ASE_00364	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	54251	8	0	8	0	79
ASE_00366	RNaseP_bact_a links to Rfam database...	0.43	0.33	0.56	32	58596	25	3	22	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	26	43040	5	0	5	0	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.79	41	55893	11	0	11	0	66
ASE_00370	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	48	41847	11	1	9	1	36
ASE_00372	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.84	43	51952	8	0	8	0	57
ASE_00374	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.85	28	44817	6	0	5	1	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.25	0.70	26	56916	11	0	11	0	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	27	57594	10	0	9	1	80
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	39	46009	9	0	8	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.81	43	41852	11	1	9	1	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	11	1	10	0	65
ASE_00384	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.87	26	48486	5	0	4	1	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	30	50371	3	0	2	1	66
ASE_00387	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.75	24	55913	9	0	8	1	80
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	49	45695	10	1	8	1	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	28	42165	3	0	2	1	57
ASE_00393	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.74	42	47838	15	1	14	0	51
ASE_00394	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	29	46940	3	0	2	1	64
ASE_00395	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.78	40	41565	11	0	11	0	44
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.34	0.93	28	41586	3	0	2	1	55
ASE_00397	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	12	0	11	1	65
ASE_00398	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.86	24	55917	5	0	4	1	80
ASE_00400	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	46	57911	13	1	12	0	60
ASE_00401	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.90	26	76999	4	0	3	1	100
ASE_00402	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.79	31	42447	8	0	8	0	54
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.88	45	55894	6	1	5	0	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	48	43013	10	1	9	0	37
ASE_00406	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	39	48782	9	0	7	2	55
ASE_00411	RNaseP_bact_a links to Rfam database...	0.44	0.33	0.59	29	49406	20	1	19	0	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.79	38	58263	11	0	10	1	67
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.70	30	44508	14	3	10	1	51
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.75	21	54918	8	0	7	1	82
ASE_00416	RNaseP_bact_a links to Rfam database...	0.42	0.21	0.82	27	77388	7	0	6	1	100
ASE_00419	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.75	42	54890	14	2	12	0	61
ASE_00422	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.79	38	46923	11	0	10	1	56
ASE_00423	RNaseP_bact_a links to Rfam database...	0.39	0.24	0.63	26	56912	15	0	15	0	83
ASE_00428	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	50	76573	13	1	12	0	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	24	46943	4	0	4	0	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.39	0.87	53	79340	8	0	8	0	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.80	40	64211	11	1	9	1	72
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	37	64214	11	0	10	1	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	70823	10	1	8	1	81
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	0	1	0	5
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_01020	Purine links to Rfam database...	0.78	0.61	1.00	14	2264	0	0	0	0	9
PDB_01073	SAM links to Rfam database...	0.59	0.35	1.00	12	4359	1	0	0	1	22
RFA_00599	Telomerase-vert links to Rfam database...	0.06	0.04	0.10	4	101435	37	2	34	1	107
RFA_00601	Telomerase-vert links to Rfam database...	0.20	0.13	0.32	15	99188	37	2	30	5	99
RFA_00602	Telomerase-vert links to Rfam database...	0.15	0.09	0.26	10	101437	34	0	28	6	106
TMR_00017	tmRNA links to Rfam database...	0.44	0.23	0.85	23	67134	8	0	4	4	79
TMR_00018	tmRNA links to Rfam database...	0.29	0.13	0.67	12	64602	10	0	6	4	80
TMR_00038	tmRNA links to Rfam database...	0.49	0.25	0.93	28	71223	4	1	1	2	82
TMR_00042	tmRNA links to Rfam database...	0.22	0.12	0.40	12	62805	21	0	18	3	86
TMR_00046	tmRNA links to Rfam database...	0.31	0.22	0.44	21	62787	30	4	23	3	75
TMR_00048	tmRNA links to Rfam database...	0.28	0.20	0.40	19	64933	33	5	23	5	76
TMR_00080	tmRNA links to Rfam database...	0.47	0.29	0.76	28	70463	9	0	9	0	68
TMR_00082	tmRNA links to Rfam database...	0.44	0.30	0.63	29	67850	21	1	16	4	67
TMR_00123	tmRNA links to Rfam database...	0.41	0.22	0.76	22	66401	12	0	7	5	79
TMR_00137	tmRNA links to Rfam database...	0.33	0.20	0.55	18	61042	21	2	13	6	71
TMR_00142	tmRNA links to Rfam database...	0.12	0.07	0.21	7	70843	33	8	18	7	95
TMR_00207	tmRNA links to Rfam database...	0.32	0.18	0.54	19	72355	16	6	10	0	84
TMR_00257	tmRNA links to Rfam database...	0.46	0.29	0.76	28	67124	14	0	9	5	70
TMR_00271	tmRNA links to Rfam database...	0.28	0.14	0.57	13	64238	15	1	9	5	78
TMR_00332	tmRNA links to Rfam database...	0.40	0.22	0.71	22	67130	14	0	9	5	77
TMR_00366	tmRNA links to Rfam database...	0.32	0.17	0.59	17	67867	23	3	9	11	83
TMR_00378	tmRNA links to Rfam database...	0.32	0.18	0.59	17	67867	23	3	9	11	80
TMR_00399	tmRNA links to Rfam database...	0.18	0.09	0.36	8	64958	14	7	7	0	86
TMR_00404	tmRNA links to Rfam database...	0.21	0.11	0.42	10	67504	25	4	10	11	82
TMR_00427	tmRNA links to Rfam database...	0.55	0.32	0.94	31	67495	7	0	2	5	66
TMR_00443	tmRNA links to Rfam database...	0.41	0.27	0.64	28	67117	20	1	15	4	76
TMR_00451	tmRNA links to Rfam database...	0.17	0.11	0.25	10	63506	34	6	24	4	79
TMR_00458	tmRNA links to Rfam database...	0.18	0.09	0.38	8	63525	16	1	12	3	85
TMR_00469	tmRNA links to Rfam database...	0.50	0.31	0.79	31	64581	12	1	7	4	69
TMR_00472	tmRNA links to Rfam database...	0.50	0.30	0.83	29	64585	10	1	5	4	68
TMR_00519	tmRNA links to Rfam database...	0.28	0.18	0.44	17	63151	27	2	20	5	78
TMR_00520	tmRNA links to Rfam database...	0.34	0.19	0.59	19	63158	13	4	9	0	80
TMR_00522	tmRNA links to Rfam database...	0.38	0.20	0.73	19	63164	7	1	6	0	78
TMR_00528	tmRNA links to Rfam database...	0.40	0.23	0.71	22	63159	13	2	7	4	75
TMR_00540	tmRNA links to Rfam database...	0.30	0.18	0.50	19	73498	24	2	17	5	85
TMR_00568	tmRNA links to Rfam database...	0.33	0.17	0.65	17	60700	14	0	9	5	82
TMR_00571	tmRNA links to Rfam database...	0.37	0.19	0.70	19	60699	13	0	8	5	80
TMR_00580	tmRNA links to Rfam database...	0.35	0.19	0.66	19	60697	15	2	8	5	81
TMR_00584	tmRNA links to Rfam database...	0.31	0.15	0.63	15	61051	15	1	8	6	82
TMR_00586	tmRNA links to Rfam database...	0.36	0.20	0.68	19	61047	14	1	8	5	78
TMR_00616	tmRNA links to Rfam database...	0.46	0.28	0.76	28	67124	12	3	6	3	71
TMR_00699	tmRNA links to Rfam database...	0.32	0.17	0.61	17	67133	12	3	8	1	85
TMR_00702	tmRNA links to Rfam database...	0.42	0.24	0.73	24	67128	10	3	6	1	76
TMR_00703	tmRNA links to Rfam database...	0.52	0.35	0.78	35	67483	15	1	9	5	64

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

2. Individual counts for CMfinder(20) [ download as .csv ]