CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		RSpredict(20)
MCC	0.473	>	0.425
Average MCC ± 95% Confidence Intervals	0.542 ± 0.019	>	0.364 ± 0.029
Sensitivity	0.463	>	0.345
Positive Predictive Value	0.483	<	0.524
Total TP	27085	>	20204
Total TN	116763130	<	116780654
Total FP	33280	>	20927
Total FP CONTRA	4836	>	2980
Total FP INCONS	24154	>	15367
Total FP COMP	4290	>	2580
Total FN	31427	<	38308
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and RSpredict(20)).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	27085
Total TN	116763130
Total FP	33280
Total FP CONTRA	4836
Total FP INCONS	24154
Total FP COMP	4290
Total FN	31427

Total Scores
MCC	0.473
Average MCC ± 95% Confidence Intervals	0.542 ± 0.019
Sensitivity	0.463
Positive Predictive Value	0.483
Nr of predictions	286

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	63	40391	23	1	15	7	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	77	61318	37	3	27	7	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	77	52561	19	3	9	7	25
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	305	1141852	193	33	126	34	169
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	162	1129847	266	32	215	19	288
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	243	1179987	211	33	153	25	221
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.37	0.35	0.40	159	1131362	267	28	211	28	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	244	1117827	214	31	158	25	214
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	119	1620359	466	89	333	44	375
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	177	1761960	439	71	295	73	342
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	160	1805396	450	77	317	56	361
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.41	0.40	207	1627588	371	65	250	56	295
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.31	178	1988449	473	80	308	85	339
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.17	90	1769489	491	93	349	49	387
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	157	1891971	430	72	285	73	357
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	173	1586376	380	60	262	58	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	368	66	255	47	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	149	1615021	383	63	270	50	354
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1674852	365	59	252	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1640234	427	81	301	45	356
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.27	0.27	0.26	136	1625786	435	79	305	51	362
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750696	459	82	340	37	377
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	143	1606064	418	64	257	97	321
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.35	186	1665698	397	77	264	56	305
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	155	1640275	399	64	272	63	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	146	1638444	427	68	297	62	340
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	90	945593	335	34	283	18	314
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	182	1693209	381	68	261	52	333
PDB_00571	tRNA links to Rfam database...	0.60	0.60	0.60	15	3296	10	6	4	0	10
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
TMR_00017	tmRNA links to Rfam database...	0.50	0.49	0.51	50	67062	55	11	38	6	52
TMR_00018	tmRNA links to Rfam database...	0.34	0.36	0.32	33	64516	76	17	54	5	59
TMR_00038	tmRNA links to Rfam database...	0.22	0.22	0.23	24	71147	87	13	69	5	86
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.33	34	62733	71	6	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.27	27	62734	81	11	63	7	69
TMR_00048	tmRNA links to Rfam database...	0.26	0.27	0.24	26	64873	87	15	66	6	69
TMR_00080	tmRNA links to Rfam database...	0.39	0.40	0.38	38	70401	62	18	43	1	58
TMR_00082	tmRNA links to Rfam database...	0.69	0.71	0.67	68	67795	38	16	17	5	28
TMR_00123	tmRNA links to Rfam database...	0.46	0.48	0.45	48	66324	63	13	45	5	53
TMR_00137	tmRNA links to Rfam database...	0.24	0.25	0.24	22	60983	79	12	58	9	67
TMR_00142	tmRNA links to Rfam database...	0.55	0.56	0.55	57	70772	62	10	37	15	45
TMR_00207	tmRNA links to Rfam database...	0.34	0.35	0.33	36	72280	79	10	64	5	67
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.13	11	67074	81	6	70	5	87
TMR_00271	tmRNA links to Rfam database...	0.59	0.56	0.61	51	64178	43	9	23	11	40
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	47	10	31	6	49
TMR_00366	tmRNA links to Rfam database...	0.57	0.55	0.59	55	67803	49	8	30	11	45
TMR_00378	tmRNA links to Rfam database...	0.26	0.28	0.25	27	67786	94	24	59	11	70
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64891	64	12	45	7	62
TMR_00404	tmRNA links to Rfam database...	0.36	0.40	0.33	37	67416	86	29	46	11	55
TMR_00427	tmRNA links to Rfam database...	0.46	0.44	0.48	43	67439	54	11	35	8	54
TMR_00443	tmRNA links to Rfam database...	0.50	0.48	0.53	50	67066	52	13	32	7	54
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63445	88	21	63	4	72
TMR_00458	tmRNA links to Rfam database...	0.46	0.44	0.47	41	63459	54	11	35	8	52
TMR_00469	tmRNA links to Rfam database...	0.51	0.53	0.50	53	64514	57	18	35	4	47
TMR_00472	tmRNA links to Rfam database...	0.46	0.45	0.46	44	64524	64	10	42	12	53
TMR_00519	tmRNA links to Rfam database...	0.40	0.38	0.42	36	63105	64	10	39	15	59
TMR_00520	tmRNA links to Rfam database...	0.51	0.49	0.52	49	63096	56	15	30	11	50
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.38	38	63091	70	16	45	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.31	28	63099	73	18	45	10	69
TMR_00540	tmRNA links to Rfam database...	0.36	0.35	0.37	36	73438	74	14	48	12	68
TMR_00568	tmRNA links to Rfam database...	0.31	0.30	0.31	30	60629	73	6	61	6	69
TMR_00571	tmRNA links to Rfam database...	0.62	0.61	0.64	60	60632	46	6	28	12	39
TMR_00580	tmRNA links to Rfam database...	0.69	0.66	0.72	66	60634	37	3	23	11	34
TMR_00584	tmRNA links to Rfam database...	0.58	0.57	0.59	55	60982	53	5	33	15	42
TMR_00586	tmRNA links to Rfam database...	0.52	0.51	0.54	49	60984	52	8	34	10	48
TMR_00616	tmRNA links to Rfam database...	0.39	0.40	0.38	40	67057	69	13	51	5	59
TMR_00699	tmRNA links to Rfam database...	0.45	0.42	0.48	43	67072	52	7	39	6	59
TMR_00702	tmRNA links to Rfam database...	0.40	0.38	0.42	38	67071	58	13	39	6	62
TMR_00703	tmRNA links to Rfam database...	0.48	0.47	0.48	47	67430	56	11	40	5	52

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	20204
Total TN	116780654
Total FP	20927
Total FP CONTRA	2980
Total FP INCONS	15367
Total FP COMP	2580
Total FN	38308

Total Scores
MCC	0.425
Average MCC ± 95% Confidence Intervals	0.364 ± 0.029
Sensitivity	0.345
Positive Predictive Value	0.524
Nr of predictions	286

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	48	47841	10	0	6	4	49
ASE_00005	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	22	57937	11	0	11	0	95
ASE_00006	RNaseP_bact_a links to Rfam database...	0.28	0.13	0.60	12	47566	8	0	8	0	81
ASE_00007	RNaseP_bact_a links to Rfam database...	0.25	0.10	0.65	11	59668	6	0	6	0	99
ASE_00012	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.42	8	73901	14	0	11	3	115
ASE_00018	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.30	10	80568	23	0	23	0	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.32	0.21	0.50	26	73868	28	6	20	2	100
ASE_00021	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.32	12	104159	28	0	25	3	148
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.44	0.61	54	82939	41	5	30	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.80	74	84573	27	1	18	8	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	44	70435	26	3	18	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.17	0.43	19	59296	27	1	24	2	91
ASE_00038	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	5	53602	21	3	18	0	96
ASE_00040	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.46	12	78977	14	0	14	0	121
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57611	19	1	18	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.47	17	90064	20	1	18	1	128
ASE_00044	RNaseP_bact_a links to Rfam database...	0.21	0.08	0.57	8	54601	9	0	6	3	97
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.11	0.33	10	45421	22	3	17	2	79
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.25	0.57	21	37638	21	1	15	5	64
ASE_00074	RNaseP_bact_a links to Rfam database...	0.23	0.13	0.41	15	67859	24	0	22	2	104
ASE_00075	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	8	108771	32	1	31	0	154
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.21	3	45136	14	1	10	3	83
ASE_00078	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.84	32	43033	8	1	5	2	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71612	21	2	17	2	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.33	6	49752	13	1	11	1	91
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70476	25	3	21	1	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.32	7	62459	17	0	15	2	103
ASE_00084	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	6	53603	21	0	19	2	93
ASE_00087	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.59	37	88347	28	1	25	2	107
ASE_00090	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	55563	23	3	18	2	74
ASE_00092	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.31	8	63520	19	2	16	1	105
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.76	32	64578	12	1	9	2	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.50	13	64235	14	0	13	1	106
ASE_00105	RNaseP_bact_a links to Rfam database...	0.15	0.06	0.35	7	64241	17	0	13	4	104
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	78	73065	15	3	7	5	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	54567	23	0	21	2	74
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60705	22	0	21	1	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.22	4	62817	17	1	13	3	104
ASE_00123	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.38	3	38495	7	0	5	2	82
ASE_00125	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.82	14	39323	4	0	3	1	74
ASE_00126	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.57	12	40449	11	1	8	2	70
ASE_00128	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.43	12	53273	17	1	15	1	88
ASE_00129	RNaseP_bact_a links to Rfam database...	0.17	0.07	0.40	8	62815	14	1	11	2	103
ASE_00131	RNaseP_bact_a links to Rfam database...	0.34	0.22	0.51	19	39303	24	0	18	6	66
ASE_00134	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	32	50355	17	3	13	1	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.36	0.24	0.53	26	63141	25	1	22	2	83
ASE_00136	RNaseP_bact_a links to Rfam database...	0.34	0.20	0.60	18	48175	15	0	12	3	74
ASE_00137	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	2	48491	24	2	21	1	96
ASE_00138	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	48	40409	18	2	11	5	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.65	53	70795	33	3	25	5	72
ASE_00142	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.59	22	67124	17	1	14	2	100
ASE_00146	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.43	10	70853	14	2	11	1	114
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57614	24	5	11	8	73
ASE_00163	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.09	1	53290	14	1	9	4	92
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.09	0.35	9	52949	18	4	13	1	92
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.67	31	48782	17	1	14	2	62
ASE_00171	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.47	8	48499	12	2	7	3	86
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.73	24	58963	11	1	8	2	82
ASE_00174	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.35	8	61052	16	1	14	1	101
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.68	27	59991	15	1	12	2	80
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44238	16	2	13	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.21	0.09	0.50	9	51342	13	1	8	4	91
ASE_00181	RNaseP_bact_a links to Rfam database...	0.32	0.16	0.63	17	57603	10	0	10	0	89
ASE_00182	RNaseP_bact_a links to Rfam database...	0.15	0.09	0.27	12	84210	35	3	30	2	124
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61405	20	0	20	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.17	0.06	0.50	6	54603	8	0	6	2	96
ASE_00185	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.26	9	73501	29	0	26	3	119
ASE_00186	RNaseP_bact_a links to Rfam database...	0.24	0.13	0.46	17	78966	22	1	19	2	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45434	18	4	13	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.10	3	89222	28	0	28	0	142
ASE_00198	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.18	2	52639	10	0	9	1	100
ASE_00203	RNaseP_bact_a links to Rfam database...	0.16	0.06	0.43	6	46651	8	0	8	0	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.21	0.11	0.40	17	93918	26	4	22	0	131
ASE_00214	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.38	9	56256	18	0	15	3	94
ASE_00215	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.31	15	48468	34	1	32	1	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.19	0.09	0.41	7	39323	10	0	10	0	75
ASE_00217	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.27	4	40455	11	0	11	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.26	0.13	0.54	15	64592	14	0	13	1	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	54	46905	18	3	9	6	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.81	34	42444	9	2	6	1	53
ASE_00231	RNaseP_bact_a links to Rfam database...	0.18	0.08	0.40	8	47875	15	0	12	3	88
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	38439	9	1	3	5	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.30	0.19	0.47	24	75415	28	4	23	1	105
ASE_00238	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.04	1	64236	27	1	23	3	113
ASE_00241	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	52	43887	22	2	15	5	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.29	0.14	0.57	16	61047	14	0	12	2	96
ASE_00248	RNaseP_bact_a links to Rfam database...	0.30	0.16	0.58	18	62450	16	0	13	3	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.71	10	36842	6	0	4	2	72
ASE_00255	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.59	19	74659	16	1	12	3	111
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51014	29	3	23	3	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.33	0.23	0.46	28	70439	34	2	31	1	92
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.32	0.65	28	45107	17	1	14	2	60
ASE_00270	RNaseP_bact_a links to Rfam database...	0.24	0.14	0.42	18	72347	26	1	24	1	110
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.07	0.47	7	55596	11	1	7	3	96
ASE_00277	RNaseP_bact_a links to Rfam database...	0.11	0.05	0.24	5	48184	18	4	12	2	86
ASE_00279	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.79	48	53240	18	2	11	5	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	53	51931	23	0	19	4	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.23	0.09	0.57	8	44537	8	0	6	2	80
ASE_00282	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.31	8	77789	20	2	16	2	119
ASE_00283	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.86	54	61713	13	0	9	4	53
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.14	0.54	15	58283	16	0	13	3	93
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.25	0.60	31	68954	22	3	18	1	91
ASE_00286	RNaseP_bact_a links to Rfam database...	0.24	0.11	0.53	10	46646	12	0	9	3	82
ASE_00287	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.33	8	54922	16	4	12	0	95
ASE_00292	RNaseP_bact_a links to Rfam database...	0.20	0.11	0.37	15	81769	28	1	25	2	123
ASE_00294	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.29	14	114432	37	1	34	2	157
ASE_00296	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	9	91765	32	2	30	0	136
ASE_00297	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.45	10	52953	14	0	12	2	88
ASE_00298	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	13	67502	15	1	12	2	100
ASE_00318	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.74	57	80123	31	2	18	11	61
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.56	0.71	63	72682	35	1	25	9	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.49	17	81775	19	0	18	1	121
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.61	0.76	71	75372	32	2	21	9	45
ASE_00340	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.83	35	46014	10	2	5	3	50
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.83	45	62427	11	2	7	2	70
ASE_00353	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.68	13	57951	8	0	6	2	94
ASE_00361	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	75456	11	0	9	2	126
ASE_00362	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.37	7	48186	14	0	12	2	84
ASE_00363	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.60	24	51320	18	1	15	2	70
ASE_00364	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	54262	19	0	19	0	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	3	58624	26	4	22	0	95
ASE_00367	RNaseP_bact_a links to Rfam database...	0.27	0.15	0.50	13	43045	15	2	11	2	73
ASE_00369	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	28	55906	15	0	11	4	79
ASE_00370	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.29	5	41888	13	1	11	1	79
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	29	51960	15	2	12	1	71
ASE_00374	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	44836	19	0	13	6	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	56919	10	0	8	2	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.36	10	57602	19	1	17	1	97
ASE_00379	RNaseP_bact_a links to Rfam database...	0.47	0.29	0.74	26	46021	11	1	8	2	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.57	0.42	0.78	35	41860	12	1	9	2	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.38	8	54594	15	2	11	2	97
ASE_00384	RNaseP_bact_a links to Rfam database...	0.19	0.10	0.38	9	48492	18	1	14	3	83
ASE_00386	RNaseP_bact_a links to Rfam database...	0.13	0.05	0.33	5	50388	11	0	10	1	91
ASE_00387	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	12	55921	15	1	11	3	92
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45739	14	1	13	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	30	42153	16	1	11	4	55
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.22	0.61	20	47862	15	1	12	2	73
ASE_00394	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	56	46904	17	2	9	6	37
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41595	22	1	20	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.05	1	41597	20	0	18	2	82
ASE_00397	RNaseP_bact_a links to Rfam database...	0.31	0.17	0.55	18	54582	17	2	13	2	87
ASE_00398	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	55918	22	0	19	3	96
ASE_00400	RNaseP_bact_a links to Rfam database...	0.28	0.15	0.53	16	57940	18	1	13	4	90
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77010	20	0	18	2	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.12	0.05	0.31	4	42473	11	0	9	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.73	29	55905	13	3	8	2	78
ASE_00404	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.19	3	43055	18	1	12	5	82
ASE_00406	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.49	17	48793	19	3	15	1	77
ASE_00411	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.43	9	49434	15	1	11	3	80
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	58284	21	2	17	2	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44533	19	1	17	1	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.30	6	54926	14	2	12	0	97
ASE_00416	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.27	3	77410	8	0	8	0	124
ASE_00419	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.48	12	54921	14	2	11	1	91
ASE_00422	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.07	2	46944	27	0	25	2	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.89	25	56925	6	0	3	3	84
ASE_00428	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.13	2	76620	15	1	13	1	123
ASE_00430	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.45	9	46951	11	0	11	0	88
ASE_00437	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	55	79333	18	2	11	5	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.47	18	64223	24	1	19	4	94
ASE_00448	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	51	64192	22	2	16	4	61
ASE_00451	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.67	31	70830	17	1	14	2	94
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	349	1085166	117	16	70	31	109
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.71	239	1141980	119	16	81	22	235
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.74	0.71	0.78	332	1170788	124	21	74	29	138
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.72	0.68	0.76	308	1107412	121	17	79	25	148
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.78	320	1172336	118	19	71	28	153
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1181590	123	18	85	20	216
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	314	1108895	119	18	78	23	143
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.78	320	1178470	123	16	74	33	145
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	316	1135876	116	15	71	30	147
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	320	1201607	124	19	79	26	156
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	315	1152520	110	20	66	24	151
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.77	308	1180015	120	17	76	27	163
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	317	1190796	115	15	68	32	151
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.68	0.63	0.74	281	1082274	126	20	81	25	164
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.74	283	1178495	122	22	80	20	190
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.71	0.67	0.76	316	1207819	125	23	77	25	159
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	319	1198513	119	20	74	25	159
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.78	285	1105963	105	14	66	25	168
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.71	0.67	0.76	322	1218719	127	19	81	27	162
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.72	0.66	0.78	317	1198517	119	19	73	27	161
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.71	0.62	0.81	292	1192380	91	18	50	23	176
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	272	1111934	101	13	67	21	183
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.70	0.65	0.75	301	1122349	125	21	80	24	161
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.76	266	1085250	106	16	69	21	180
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	315	1114864	116	18	74	24	142
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	244	1110451	120	17	83	20	209
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	231	1129930	115	14	81	20	219
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.75	308	1180005	131	20	83	28	156
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.75	300	1117861	125	19	80	26	153
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	311	1144937	123	15	78	30	153
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.77	301	1131370	113	18	71	24	155
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.73	254	1117913	115	15	78	22	204
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.70	0.66	0.76	312	1189241	126	19	81	26	164
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	3	1620508	410	63	326	21	491
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.31	0.36	161	1762053	322	46	243	33	358
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.39	158	1445446	293	34	212	47	304
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1805520	442	63	359	20	513
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.36	0.34	0.38	172	1627656	314	50	232	32	330
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1988575	477	82	350	45	509
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	3	1769654	389	59	305	25	474
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1892051	454	80	353	21	513
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1586488	384	57	318	9	490
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.39	156	1584690	293	33	211	49	345
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615104	410	69	330	11	503
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1674979	406	62	324	20	507
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	4	1579393	371	66	290	15	478
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.39	0.37	0.42	186	1640327	297	32	221	44	320
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1611495	424	63	344	17	488
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1625926	390	51	321	18	490
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126541	465	66	346	53	534
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1750835	427	65	348	14	507
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606168	385	68	292	25	464
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615135	382	74	294	14	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.31	0.36	152	1665808	305	45	220	40	343
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	258	1116413	115	15	79	21	200
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.75	244	1094136	105	9	71	25	201
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.73	249	1119415	115	6	86	23	203
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.76	283	1098533	118	13	74	31	163
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.30	0.27	0.33	134	1665821	312	37	233	42	357
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1640340	444	79	347	18	483
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	9	1636732	429	64	340	25	472
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1638553	425	77	325	23	486
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.71	196	945723	109	10	71	28	208
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	254	1137446	113	13	73	27	193
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.75	209	1152644	114	10	58	46	185
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.61	0.51	0.72	241	1117925	111	14	80	17	229
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	319	1135862	125	18	79	28	145
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.40	155	1606145	262	44	184	34	348
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.02	0.01	0.02	7	1593610	403	61	327	15	499
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1693285	445	62	373	10	515
PDB_00571	tRNA links to Rfam database...	0.66	0.56	0.78	14	3303	5	0	4	1	11
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.75	297	1073447	132	13	88	31	198
PDB_00828	Purine links to Rfam database...	0.82	0.74	0.91	20	2463	2	2	0	0	7
PDB_00829	Purine links to Rfam database...	0.70	0.63	0.79	15	2259	4	2	2	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.62	0.50	0.76	266	1500430	124	10	72	42	269
PDB_01020	Purine links to Rfam database...	0.84	0.78	0.90	18	2258	3	2	0	1	5
PDB_01073	SAM links to Rfam database...	0.34	0.18	0.67	6	4362	3	0	3	0	28
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.77	268	1471123	123	8	71	44	279
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.49	0.80	278	1606180	104	12	58	34	284
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.75	270	1433609	124	8	84	32	270
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	282	1204758	129	8	80	41	245
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.69	0.62	0.77	305	1117865	121	14	76	31	186
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.32	0.61	36	101416	35	2	21	12	75
RFA_00601	Telomerase-vert links to Rfam database...	0.53	0.35	0.80	40	99185	20	0	10	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.44	0.29	0.65	34	101423	27	1	17	9	82
TMR_00017	tmRNA links to Rfam database...	0.39	0.35	0.42	36	67076	53	12	37	4	66
TMR_00018	tmRNA links to Rfam database...	0.57	0.54	0.60	50	64537	36	14	19	3	42
TMR_00038	tmRNA links to Rfam database...	0.47	0.30	0.73	33	71208	14	4	8	2	77
TMR_00042	tmRNA links to Rfam database...	0.58	0.46	0.74	45	62774	17	5	11	1	53
TMR_00046	tmRNA links to Rfam database...	0.54	0.50	0.59	48	62753	36	12	22	2	48
TMR_00048	tmRNA links to Rfam database...	0.49	0.44	0.54	42	64902	40	10	26	4	53
TMR_00080	tmRNA links to Rfam database...	0.39	0.34	0.44	33	70425	44	11	31	2	63
TMR_00082	tmRNA links to Rfam database...	0.59	0.55	0.64	53	67813	33	13	17	3	43
TMR_00123	tmRNA links to Rfam database...	0.67	0.61	0.73	62	66345	28	8	15	5	39
TMR_00137	tmRNA links to Rfam database...	0.48	0.38	0.60	34	61018	24	7	16	1	55
TMR_00142	tmRNA links to Rfam database...	0.45	0.39	0.51	40	70798	38	9	29	0	62
TMR_00207	tmRNA links to Rfam database...	0.51	0.47	0.56	48	72304	45	12	26	7	55
TMR_00257	tmRNA links to Rfam database...	0.61	0.53	0.69	52	67086	26	3	20	3	46
TMR_00271	tmRNA links to Rfam database...	0.30	0.22	0.40	20	64211	34	5	25	4	71
TMR_00332	tmRNA links to Rfam database...	0.66	0.61	0.71	60	67077	31	8	16	7	39
TMR_00366	tmRNA links to Rfam database...	0.41	0.41	0.41	41	67795	61	13	47	1	59
TMR_00378	tmRNA links to Rfam database...	0.40	0.40	0.40	39	67798	60	13	46	1	58
TMR_00399	tmRNA links to Rfam database...	0.27	0.16	0.47	15	64948	18	5	12	1	79
TMR_00404	tmRNA links to Rfam database...	0.44	0.37	0.52	34	67463	31	6	25	0	58
TMR_00427	tmRNA links to Rfam database...	0.60	0.53	0.69	51	67454	27	6	17	4	46
TMR_00443	tmRNA links to Rfam database...	0.68	0.64	0.73	67	67069	28	11	14	3	37
TMR_00451	tmRNA links to Rfam database...	0.37	0.34	0.42	30	63474	47	14	28	5	59
TMR_00458	tmRNA links to Rfam database...	0.55	0.47	0.64	44	63477	26	6	19	1	49
TMR_00469	tmRNA links to Rfam database...	0.52	0.40	0.69	40	64562	22	7	11	4	60
TMR_00472	tmRNA links to Rfam database...	0.64	0.58	0.71	56	64541	26	11	12	3	41
TMR_00519	tmRNA links to Rfam database...	0.22	0.15	0.34	14	63149	29	5	22	2	81
TMR_00520	tmRNA links to Rfam database...	0.54	0.51	0.57	50	63102	40	11	27	2	49
TMR_00522	tmRNA links to Rfam database...	0.43	0.39	0.48	38	63111	43	11	30	2	59
TMR_00528	tmRNA links to Rfam database...	0.42	0.38	0.46	37	63110	44	14	29	1	60
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.62	47	73460	32	10	19	3	57
TMR_00568	tmRNA links to Rfam database...	0.32	0.28	0.35	28	60647	51	10	41	0	71
TMR_00571	tmRNA links to Rfam database...	0.43	0.40	0.47	40	60640	46	10	36	0	59
TMR_00580	tmRNA links to Rfam database...	0.62	0.59	0.66	59	60636	37	8	23	6	41
TMR_00584	tmRNA links to Rfam database...	0.43	0.38	0.48	37	60998	40	11	29	0	60
TMR_00586	tmRNA links to Rfam database...	0.37	0.36	0.37	35	60981	59	20	39	0	62
TMR_00616	tmRNA links to Rfam database...	0.56	0.45	0.68	45	67095	24	4	17	3	54
TMR_00699	tmRNA links to Rfam database...	0.68	0.63	0.74	64	67074	25	8	15	2	38
TMR_00702	tmRNA links to Rfam database...	0.64	0.59	0.70	59	67077	28	7	18	3	41
TMR_00703	tmRNA links to Rfam database...	0.69	0.64	0.76	63	67445	23	4	16	3	36

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]