CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	RNAalifold(seed)		Fold
MCC	0.629	>	0.475
Average MCC ± 95% Confidence Intervals	0.523 ± 0.018	>	0.521 ± 0.017
Sensitivity	0.485	>	0.472
Positive Predictive Value	0.816	>	0.478
Total TP	29837	>	29034
Total TN	103362867	>	103338742
Total FP	7936	<	36107
Total FP CONTRA	1378	<	4389
Total FP INCONS	5350	<	27267
Total FP COMP	1208	<	4451
Total FN	31656	<	32459
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of RNAalifold(seed) and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(seed) and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(seed) and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(seed) and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(seed) and Fold).

^top

Performance of RNAalifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(seed)

Total Base Pair Counts
Total TP	29837
Total TN	103362867
Total FP	7936
Total FP CONTRA	1378
Total FP INCONS	5350
Total FP COMP	1208
Total FN	31656

Total Scores
MCC	0.629
Average MCC ± 95% Confidence Intervals	0.523 ± 0.018
Sensitivity	0.485
Positive Predictive Value	0.816
Nr of predictions	363

^top

2. Individual counts for RNAalifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.77	0.59	1.00	44	34147	0	0	0	0	31
ASE_00002	RNaseP_arch links to Rfam database...	0.78	0.60	1.00	44	35467	0	0	0	0	29
ASE_00004	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.88	22	47870	3	0	3	0	75
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	30	57932	8	1	7	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.83	20	47562	4	0	4	0	73
ASE_00007	RNaseP_bact_a links to Rfam database...	0.52	0.33	0.82	36	59641	8	1	7	0	74
ASE_00009	RNaseP_arch links to Rfam database...	0.74	0.60	0.93	40	26063	3	0	3	0	27
ASE_00012	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.80	32	73880	11	1	7	3	91
ASE_00014	RNaseP_arch links to Rfam database...	0.70	0.52	0.95	55	54227	3	0	3	0	51
ASE_00017	RNaseP_nuc links to Rfam database...	0.51	0.31	0.83	20	51016	5	0	4	1	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	80557	8	1	7	0	98
ASE_00020	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.73	22	73890	8	3	5	0	104
ASE_00021	RNaseP_bact_a links to Rfam database...	0.39	0.18	0.83	29	104161	6	1	5	0	131
ASE_00022	RNaseP_bact_b links to Rfam database...	0.65	0.48	0.89	59	82962	13	1	6	6	65
ASE_00023	RNaseP_bact_a links to Rfam database...	0.39	0.21	0.71	27	84217	13	1	10	2	100
ASE_00025	RNaseP_nuc links to Rfam database...	0.48	0.28	0.83	20	78582	5	0	4	1	51
ASE_00026	RNaseP_bact_a links to Rfam database...	0.49	0.31	0.77	34	59641	10	1	9	0	76
ASE_00028	RNaseP_bact_b links to Rfam database...	0.65	0.48	0.90	60	84599	12	1	6	5	66
ASE_00029	RNaseP_bact_a links to Rfam database...	0.30	0.14	0.65	17	83002	10	1	8	1	105
ASE_00030	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	36	85449	6	1	5	0	109
ASE_00031	RNaseP_bact_a links to Rfam database...	0.37	0.20	0.68	25	86699	12	1	11	0	101
ASE_00032	RNaseP_bact_a links to Rfam database...	0.22	0.09	0.50	11	80178	12	1	10	1	107
ASE_00033	RNaseP_bact_a links to Rfam database...	0.48	0.29	0.81	35	64937	8	1	7	0	86
ASE_00035	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	33	70459	11	1	7	3	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.78	29	75818	8	1	7	0	103
ASE_00037	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.81	35	59297	8	1	7	0	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	53599	6	1	5	0	78
ASE_00040	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	78959	8	1	7	0	97
ASE_00041	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.88	30	57596	4	0	4	0	78
ASE_00042	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.75	33	90056	11	1	10	0	112
ASE_00044	RNaseP_bact_a links to Rfam database...	0.52	0.33	0.81	35	54572	8	1	7	0	70
ASE_00046	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.81	35	50360	8	1	7	0	68
ASE_00047	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	26	74266	13	1	12	0	104
ASE_00052	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.79	34	61382	9	1	8	0	78
ASE_00053	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	30	79363	8	1	7	0	103
ASE_00057	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	82171	8	1	7	0	98
ASE_00064	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	22	45423	6	1	5	0	67
ASE_00066	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	31	72351	8	1	7	0	99
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.20	0.68	17	37650	8	1	7	0	68
ASE_00069	RNaseP_bact_a links to Rfam database...	0.45	0.25	0.81	35	82985	9	1	7	1	105
ASE_00074	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	36	67852	8	1	7	0	83
ASE_00075	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.79	30	108773	13	1	7	5	132
ASE_00076	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.79	23	68236	6	1	5	0	95
ASE_00077	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	18	45126	6	1	5	0	68
ASE_00078	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.85	23	43044	6	0	4	2	60
ASE_00079	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	55582	6	1	5	0	77
ASE_00080	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.48	14	71602	15	1	14	0	109
ASE_00081	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	23	49741	6	1	5	0	74
ASE_00082	RNaseP_bact_a links to Rfam database...	0.34	0.16	0.75	18	70476	6	1	5	0	98
ASE_00083	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	62452	6	1	5	0	87
ASE_00084	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	53599	6	1	5	0	76
ASE_00087	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.79	23	88381	6	1	5	0	121
ASE_00090	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	55582	6	1	5	0	78
ASE_00092	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.79	23	63517	6	1	5	0	90
ASE_00096	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.79	23	63517	6	1	5	0	92
ASE_00099	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.82	36	64576	8	1	7	0	84
ASE_00100	RNaseP_nuc links to Rfam database...	0.47	0.26	0.83	20	82191	5	0	4	1	56
ASE_00102	RNaseP_bact_a links to Rfam database...	0.36	0.18	0.71	30	117813	12	1	11	0	136
ASE_00104	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	36	64217	8	1	7	0	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.73	22	64231	8	3	5	0	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.48	0.28	0.82	36	73109	8	1	7	0	91
ASE_00108	RNaseP_nuc links to Rfam database...	0.51	0.32	0.83	20	46947	5	0	4	1	43
ASE_00111	RNaseP_nuc links to Rfam database...	0.52	0.32	0.86	18	50065	3	0	3	0	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.33	0.19	0.58	22	75428	16	1	15	0	94
ASE_00115	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	22	54587	6	1	5	0	79
ASE_00116	RNaseP_arch links to Rfam database...	0.82	0.68	0.98	45	31580	1	0	1	0	21
ASE_00118	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	22	60698	7	1	5	1	80
ASE_00119	RNaseP_bact_a links to Rfam database...	0.31	0.12	0.81	13	62819	3	1	2	0	95
ASE_00120	RNaseP_arch links to Rfam database...	0.76	0.59	0.98	55	46915	2	0	1	1	39
ASE_00121	RNaseP_arch links to Rfam database...	0.77	0.61	0.98	56	45093	1	0	1	0	36
ASE_00122	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	43336	6	1	5	0	65
ASE_00123	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.74	17	38480	6	1	5	0	68
ASE_00125	RNaseP_bact_a links to Rfam database...	0.37	0.16	0.88	14	39324	2	0	2	0	74
ASE_00128	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.88	22	53276	3	1	2	0	78
ASE_00129	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.79	23	62806	6	1	5	0	88
ASE_00131	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.71	17	39316	7	2	5	0	68
ASE_00132	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.77	23	50373	7	2	5	0	72
ASE_00134	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	50374	6	1	5	0	72
ASE_00135	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.72	21	63161	8	1	7	0	88
ASE_00136	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48176	6	1	5	0	69
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.85	22	48490	4	0	4	0	76
ASE_00138	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.79	23	40441	6	1	5	0	58
ASE_00139	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54256	6	1	5	0	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.36	0.18	0.73	22	70846	8	3	5	0	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	36	67118	7	1	6	0	86
ASE_00145	RNaseP_arch links to Rfam database...	0.73	0.54	1.00	60	70065	0	0	0	0	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.49	0.29	0.82	36	70832	8	1	7	0	88
ASE_00148	RNaseP_arch links to Rfam database...	0.59	0.37	0.95	57	112515	3	0	3	0	97
ASE_00151	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.82	36	51959	8	1	7	0	62
ASE_00153	RNaseP_nuc links to Rfam database...	0.37	0.21	0.68	15	57608	7	0	7	0	58
ASE_00154	RNaseP_arch links to Rfam database...	0.71	0.53	0.95	57	65281	3	0	3	0	50
ASE_00155	RNaseP_arch links to Rfam database...	0.65	0.42	1.00	60	93468	0	0	0	0	82
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	53272	6	1	5	0	70
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	52950	5	1	4	0	81
ASE_00168	RNaseP_nuc links to Rfam database...	0.51	0.31	0.83	20	60702	5	0	4	1	44
ASE_00169	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	20	57261	10	2	8	0	87
ASE_00170	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48799	6	1	5	0	70
ASE_00171	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	48487	6	1	5	0	71
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	23	58967	6	1	5	0	83
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.76	22	61046	7	2	5	0	87
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	60001	7	2	5	0	84
ASE_00176	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	60002	6	1	5	0	87
ASE_00179	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.77	17	44231	5	1	4	0	67
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.77	23	51330	7	2	5	0	77
ASE_00181	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.77	23	57600	7	2	5	0	83
ASE_00182	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.79	23	84226	6	1	5	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	54586	6	1	5	0	79
ASE_00185	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.79	23	73507	6	1	5	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	33	78959	11	1	10	0	99
ASE_00187	RNaseP_arch links to Rfam database...	0.65	0.46	0.91	53	68577	5	1	4	0	62
ASE_00189	RNaseP_bact_b links to Rfam database...	0.66	0.52	0.84	53	63127	15	1	9	5	49
ASE_00190	RNaseP_bact_b links to Rfam database...	0.66	0.50	0.87	45	45399	12	1	6	5	45
ASE_00192	RNaseP_bact_b links to Rfam database...	0.48	0.32	0.70	43	84605	22	1	17	4	90
ASE_00194	RNaseP_bact_b links to Rfam database...	0.63	0.45	0.87	54	73474	13	1	7	5	65
ASE_00196	RNaseP_arch links to Rfam database...	0.77	0.63	0.96	47	31577	2	0	2	0	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.75	33	89209	11	1	10	0	112
ASE_00203	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.77	20	46639	6	2	4	0	76
ASE_00204	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	56	67833	13	1	6	6	56
ASE_00205	RNaseP_arch links to Rfam database...	0.77	0.60	1.00	54	46002	1	0	0	1	36
ASE_00209	RNaseP_arch links to Rfam database...	0.79	0.64	0.98	56	43014	1	0	1	0	32
ASE_00210	RNaseP_arch links to Rfam database...	0.68	0.55	0.84	36	27218	9	0	7	2	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.40	0.22	0.74	32	93918	11	1	10	0	116
ASE_00213	RNaseP_arch links to Rfam database...	0.78	0.62	0.98	41	27219	3	0	1	2	25
ASE_00214	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.72	18	56255	7	2	5	0	85
ASE_00215	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.74	17	48493	6	1	5	0	82
ASE_00216	RNaseP_bact_a links to Rfam database...	0.46	0.24	0.87	20	39317	3	0	3	0	62
ASE_00217	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	30	40432	8	1	7	0	60
ASE_00221	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.82	36	64576	8	1	7	0	81
ASE_00222	RNaseP_arch links to Rfam database...	0.62	0.38	1.00	60	112041	0	0	0	0	97
ASE_00227	RNaseP_bact_a links to Rfam database...	0.37	0.20	0.68	27	78963	13	1	12	0	106
ASE_00228	RNaseP_bact_a links to Rfam database...	0.47	0.26	0.88	22	46946	3	0	3	0	64
ASE_00229	RNaseP_bact_a links to Rfam database...	0.47	0.25	0.88	22	42461	3	0	3	0	65
ASE_00231	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.88	22	47870	3	0	3	0	74
ASE_00232	RNaseP_bact_a links to Rfam database...	0.48	0.26	0.88	22	38478	3	0	3	0	62
ASE_00234	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.73	22	75436	8	3	5	0	107
ASE_00237	RNaseP_nuc links to Rfam database...	0.52	0.32	0.86	18	45732	3	0	3	0	38
ASE_00238	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.73	22	64231	8	3	5	0	92
ASE_00240	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.59	17	46636	12	1	11	0	76
ASE_00241	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.79	23	43927	6	1	5	0	64
ASE_00242	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	36	61031	8	1	7	0	76
ASE_00246	RNaseP_nuc links to Rfam database...	0.57	0.33	1.00	22	48183	0	0	0	0	45
ASE_00247	RNaseP_nuc links to Rfam database...	0.51	0.31	0.83	20	54261	5	0	4	1	44
ASE_00248	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	36	62437	8	1	7	0	78
ASE_00250	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.81	35	78960	8	1	7	0	96
ASE_00252	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.79	31	115401	12	1	7	4	137
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.88	22	36831	3	0	3	0	60
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.81	35	74648	8	1	7	0	95
ASE_00257	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	23	51011	6	1	5	0	74
ASE_00259	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	33	73112	8	1	7	0	88
ASE_00263	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.79	23	70471	6	1	5	0	97
ASE_00264	RNaseP_nuc links to Rfam database...	0.50	0.25	1.00	25	49116	0	0	0	0	75
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	45121	6	1	5	0	65
ASE_00270	RNaseP_bact_a links to Rfam database...	0.22	0.09	0.52	12	72367	12	1	10	1	116
ASE_00274	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.73	22	55581	8	3	5	0	81
ASE_00277	RNaseP_bact_a links to Rfam database...	0.42	0.24	0.73	22	48175	8	3	5	0	69
ASE_00279	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	53272	6	1	5	0	78
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.86	18	51982	3	1	2	0	80
ASE_00281	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	44522	6	1	5	0	65
ASE_00282	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.77	23	77785	7	2	5	0	104
ASE_00283	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.75	18	61752	6	1	5	0	89
ASE_00284	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.77	23	58281	7	2	5	0	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.79	23	68977	6	1	5	0	99
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	22	46637	6	1	5	0	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54917	6	1	5	0	80
ASE_00288	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.77	23	46026	7	2	5	0	70
ASE_00289	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.81	35	100982	8	1	7	0	122
ASE_00292	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	36	81766	8	1	7	0	102
ASE_00294	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.82	36	114437	8	1	7	0	135
ASE_00295	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	73876	8	1	7	0	95
ASE_00296	RNaseP_bact_a links to Rfam database...	0.45	0.25	0.82	36	91762	8	1	7	0	109
ASE_00297	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	52946	6	1	5	0	75
ASE_00298	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.79	23	67499	6	1	5	0	90
ASE_00299	RNaseP_bact_a links to Rfam database...	0.39	0.23	0.66	23	49420	12	1	11	0	77
ASE_00313	RNaseP_nuc links to Rfam database...	0.32	0.15	0.68	13	62462	8	2	4	2	76
ASE_00316	RNaseP_nuc links to Rfam database...	0.22	0.07	0.70	7	107870	4	0	3	1	91
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.48	0.89	57	80136	13	1	6	6	61
ASE_00327	RNaseP_nuc links to Rfam database...	0.45	0.21	0.95	19	57271	6	0	1	5	70
ASE_00328	RNaseP_bact_b links to Rfam database...	0.69	0.54	0.90	60	72704	12	1	6	5	52
ASE_00330	RNaseP_nuc links to Rfam database...	0.53	0.28	1.00	25	56255	0	0	0	0	65
ASE_00332	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	36	81766	8	1	7	0	102
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.52	0.90	60	75399	12	1	6	5	56
ASE_00337	RNaseP_nuc links to Rfam database...	0.48	0.25	0.90	18	39320	7	0	2	5	53
ASE_00338	RNaseP_nuc links to Rfam database...	0.33	0.14	0.78	14	66412	4	0	4	0	84
ASE_00339	RNaseP_bact_a links to Rfam database...	0.48	0.29	0.81	34	80158	9	1	7	1	85
ASE_00340	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.86	18	46035	3	0	3	0	67
ASE_00342	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.82	36	62437	8	1	7	0	79
ASE_00343	RNaseP_bact_a links to Rfam database...	0.31	0.16	0.60	18	83406	12	2	10	0	95
ASE_00346	RNaseP_arch links to Rfam database...	0.57	0.44	0.74	43	48147	15	0	15	0	54
ASE_00353	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	57940	7	2	5	0	84
ASE_00359	RNaseP_arch links to Rfam database...	0.73	0.55	0.98	44	42733	2	0	1	1	36
ASE_00360	RNaseP_arch links to Rfam database...	0.82	0.69	0.98	45	29357	1	0	1	0	20
ASE_00361	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.76	22	75437	7	2	5	0	105
ASE_00362	RNaseP_bact_a links to Rfam database...	0.45	0.25	0.79	23	48176	6	1	5	0	68
ASE_00363	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	51331	6	1	5	0	71
ASE_00364	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.77	23	54255	7	2	5	0	82
ASE_00366	RNaseP_bact_a links to Rfam database...	0.36	0.18	0.72	18	58628	7	2	5	0	80
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	43042	6	1	5	0	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	55916	6	1	5	0	84
ASE_00370	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.76	22	41876	7	1	6	0	62
ASE_00372	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.76	22	51974	7	1	6	0	78
ASE_00374	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	44821	6	1	5	0	65
ASE_00375	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	60349	6	1	5	0	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	56924	6	1	5	0	82
ASE_00377	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	57600	7	2	5	0	84
ASE_00379	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	46027	6	1	5	0	66
ASE_00380	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	54917	6	1	5	0	76
ASE_00382	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.79	23	41876	6	1	5	0	61
ASE_00383	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54586	6	1	5	0	82
ASE_00384	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48487	6	1	5	0	69
ASE_00385	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	21	41876	8	1	7	0	60
ASE_00386	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	50374	6	1	5	0	73
ASE_00387	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.72	21	55916	8	1	7	0	83
ASE_00388	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	45724	6	1	5	0	66
ASE_00390	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	42166	6	1	5	0	62
ASE_00393	RNaseP_bact_a links to Rfam database...	0.40	0.23	0.72	21	47866	8	1	7	0	72
ASE_00394	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	46942	6	1	5	0	70
ASE_00395	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.79	23	41587	6	1	5	0	61
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.79	23	41587	6	1	5	0	60
ASE_00397	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54586	6	1	5	0	82
ASE_00398	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	55916	6	1	5	0	81
ASE_00400	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	23	57941	6	1	5	0	83
ASE_00401	RNaseP_bact_a links to Rfam database...	0.33	0.14	0.75	18	77004	6	1	5	0	108
ASE_00402	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	42457	6	1	5	0	62
ASE_00403	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	55916	6	1	5	0	84
ASE_00404	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	43042	6	1	5	0	62
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	48799	6	1	5	0	71
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.69	22	49423	10	5	5	0	67
ASE_00412	RNaseP_bact_a links to Rfam database...	0.39	0.21	0.73	22	58281	8	3	5	0	83
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	22	44523	6	1	5	0	59
ASE_00414	RNaseP_bact_a links to Rfam database...	0.42	0.24	0.74	23	46329	8	3	5	0	72
ASE_00415	RNaseP_bact_a links to Rfam database...	0.33	0.17	0.68	17	54921	8	1	7	0	86
ASE_00416	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	35	77377	9	1	8	0	92
ASE_00417	RNaseP_arch links to Rfam database...	0.76	0.59	0.98	59	54555	1	0	1	0	41
ASE_00418	RNaseP_arch links to Rfam database...	0.77	0.60	0.98	45	38735	1	0	1	0	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.73	22	54916	8	2	6	0	81
ASE_00422	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.86	18	46950	3	0	3	0	76
ASE_00423	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.81	35	56910	8	1	7	0	74
ASE_00426	RNaseP_bact_a links to Rfam database...	0.25	0.13	0.48	14	61046	15	1	14	0	94
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	35	76592	9	1	8	0	90
ASE_00430	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.83	20	46947	4	0	4	0	77
ASE_00431	RNaseP_bact_a links to Rfam database...	0.38	0.23	0.63	22	46325	13	3	10	0	73
ASE_00434	RNaseP_bact_b links to Rfam database...	0.64	0.50	0.82	55	68198	17	1	11	5	55
ASE_00437	RNaseP_bact_a links to Rfam database...	0.30	0.17	0.55	23	79359	19	1	18	0	112
ASE_00438	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.77	23	66036	7	2	5	0	93
ASE_00441	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.78	21	64234	7	1	5	1	91
ASE_00447	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.82	36	60334	8	1	7	0	80
ASE_00448	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.77	34	64217	10	1	9	0	78
ASE_00451	RNaseP_bact_a links to Rfam database...	0.48	0.29	0.82	36	70832	8	1	7	0	89
CRW_00013	Intron_gpI links to Rfam database...	0.46	0.23	0.90	27	103710	3	0	3	0	88
CRW_00016	Intron_gpI links to Rfam database...	0.45	0.23	0.90	27	77391	3	0	3	0	93
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.87	0.84	0.90	385	1085175	58	7	34	17	73
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.82	0.77	0.88	363	1141905	62	14	34	14	111
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.88	372	1170793	59	16	34	9	98
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.88	369	1107397	60	16	34	10	87
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.88	367	1172327	61	16	36	9	106
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.82	0.77	0.88	367	1181535	61	16	35	10	109
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.88	370	1108886	58	15	34	9	87
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.89	368	1178465	61	12	35	14	97
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	367	1135858	62	16	37	9	96
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.88	369	1201606	61	16	34	11	107
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	368	1152515	47	13	25	9	98
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	372	1180006	46	13	25	8	99
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.88	365	1190782	64	12	37	15	103
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.84	336	1082254	76	16	50	10	109
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.82	0.77	0.87	364	1178460	66	16	40	10	109
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.82	0.77	0.87	365	1207815	63	16	39	8	110
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.88	369	1198508	59	15	34	10	109
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.88	366	1105912	60	16	34	10	87
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	369	1218720	61	16	36	9	115
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.82	0.77	0.88	369	1198505	61	16	36	9	109
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	369	1192333	48	13	25	10	99
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.88	368	1111868	59	15	35	9	87
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.90	359	1122350	51	13	29	9	103
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.87	358	1085191	60	16	36	8	88
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.88	366	1114854	59	16	35	8	91
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	359	1110382	64	17	37	10	94
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.88	349	1129861	58	13	33	12	101
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	372	1180005	54	13	26	15	92
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.89	363	1117851	59	13	33	13	90
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.91	372	1144932	48	13	24	11	92
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.85	323	1015644	67	14	44	9	109
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.89	356	1131358	59	13	33	13	100
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.86	356	1117847	66	17	40	9	102
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.80	0.75	0.86	358	1189235	67	16	44	7	118
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.77	0.71	0.84	329	1123856	76	14	51	11	132
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.45	0.39	0.52	178	1445508	175	32	132	11	284
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.44	0.37	0.53	184	1627762	174	32	132	10	318
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.44	0.36	0.53	184	1675017	173	32	132	9	323
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.42	0.36	0.51	172	1579413	180	32	136	12	310
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.36	0.52	181	1611565	175	31	133	11	315
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.44	0.37	0.53	184	1625958	174	32	132	10	314
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.32	0.50	169	2126616	180	32	136	12	365
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.44	0.35	0.55	182	1750923	164	28	123	13	333
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.45	0.38	0.55	186	1615165	163	28	124	11	310
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.45	0.37	0.54	182	1665890	171	28	125	18	313
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.86	0.82	0.91	377	1116350	49	12	26	11	81
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.92	361	1094068	53	6	25	22	84
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.92	366	1119360	52	6	24	22	86
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.92	365	1098507	56	8	23	25	81
CRW_00610	Intron_gpI links to Rfam database...	0.54	0.31	0.96	25	36289	3	0	1	2	56
CRW_00613	Intron_gpI links to Rfam database...	0.42	0.22	0.81	17	34959	6	0	4	2	61
CRW_00614	Intron_gpI links to Rfam database...	0.45	0.32	0.64	18	121743	11	2	8	1	39
CRW_00618	Intron_gpI links to Rfam database...	0.39	0.26	0.59	16	56253	11	2	9	0	45
CRW_00619	Intron_gpI links to Rfam database...	0.41	0.23	0.74	17	165002	7	0	6	1	56
CRW_00620	Intron_gpI links to Rfam database...	0.35	0.21	0.59	13	150953	16	0	9	7	50
CRW_00621	Intron_gpI links to Rfam database...	0.36	0.21	0.60	15	153156	11	2	8	1	56
CRW_00623	Intron_gpI links to Rfam database...	0.35	0.18	0.68	15	129773	9	1	6	2	68
CRW_00633	Intron_gpI links to Rfam database...	0.40	0.21	0.76	22	63517	7	2	5	0	84
CRW_00634	Intron_gpI links to Rfam database...	0.37	0.18	0.74	17	64597	12	0	6	6	77
CRW_00670	Intron_gpI links to Rfam database...	0.48	0.24	0.97	29	70095	1	0	1	0	91
CRW_00671	Intron_gpI links to Rfam database...	0.49	0.25	0.97	29	62805	1	0	1	0	88
CRW_00672	Intron_gpI links to Rfam database...	0.50	0.26	0.97	29	72360	1	0	1	0	82
CRW_00674	Intron_gpI links to Rfam database...	0.29	0.14	0.63	17	83409	10	6	4	0	107
CRW_00676	Intron_gpI links to Rfam database...	0.32	0.15	0.68	17	93503	13	0	8	5	98
CRW_00692	Intron_gpI links to Rfam database...	0.34	0.17	0.68	15	68613	13	0	7	6	75
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.41	0.34	0.49	163	1636811	183	35	136	12	318
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.92	348	1215641	59	6	25	28	98
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.81	0.75	0.88	302	945656	72	5	37	30	102
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.91	312	1201683	85	4	26	55	72
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	355	1137395	59	8	28	23	92
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.78	0.73	0.84	288	1152577	109	10	46	53	106
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.42	0.33	0.52	156	1401675	160	25	119	16	314
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	356	1117856	63	14	34	15	114
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.88	372	1135856	59	15	35	9	92
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.34	0.49	172	1606179	193	36	141	16	331
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.43	0.36	0.52	181	1593657	177	34	133	10	325
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.83	0.79	0.88	344	977508	71	5	44	22	90
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.59	0.36	1.00	5	941	0	0	0	0	9
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.69	0.87	344	1073448	73	7	46	20	151
PDB_00716	HDV_ribozyme links to Rfam database...	0.60	0.43	0.83	10	2689	2	0	2	0	13
PDB_00827	Intron_gpI links to Rfam database...	0.35	0.21	0.59	17	26999	12	2	10	0	64
PDB_00828	Purine links to Rfam database...	0.70	0.59	0.84	16	2466	3	2	1	0	11
PDB_00829	Purine links to Rfam database...	0.75	0.67	0.84	16	2259	3	2	1	0	8
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.74	0.64	0.87	342	1500383	85	10	43	32	193
PDB_00919	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.58	19	44220	16	1	13	2	84
PDB_01020	Purine links to Rfam database...	0.73	0.65	0.83	15	2260	4	2	1	1	8
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.73	0.63	0.86	342	1471073	85	8	47	30	205
PDB_01092	glmS links to Rfam database...	0.70	0.54	0.90	28	10122	4	0	3	1	24
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.74	0.63	0.87	355	1606120	72	10	43	19	207
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.76	0.66	0.88	355	1433566	72	7	43	22	185
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.77	0.68	0.87	358	1204715	73	7	48	18	169
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.70	0.86	346	1117856	80	13	45	22	145
RFA_00597	Telomerase-vert links to Rfam database...	0.71	0.61	0.84	66	97824	18	0	13	5	43
RFA_00598	Telomerase-vert links to Rfam database...	0.68	0.58	0.79	59	84591	25	0	16	9	42
RFA_00599	Telomerase-vert links to Rfam database...	0.79	0.66	0.95	73	101398	7	0	4	3	38
RFA_00600	Telomerase-vert links to Rfam database...	0.76	0.63	0.91	63	120226	15	0	6	9	37
RFA_00601	Telomerase-vert links to Rfam database...	0.79	0.67	0.93	76	99153	10	0	6	4	38
RFA_00602	Telomerase-vert links to Rfam database...	0.76	0.65	0.90	75	101392	11	0	8	3	41
RFA_00632	HDV_ribozyme links to Rfam database...	0.49	0.32	0.75	9	4083	3	2	1	0	19
RFA_00636	HDV_ribozyme links to Rfam database...	0.49	0.32	0.75	9	3993	3	2	1	0	19
RFA_00767	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1878	3	0	3	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1878	3	0	3	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	0	3	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	2003	3	0	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	0	3	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	0	3	0	8
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00809	RydC links to Rfam database...	0.50	0.38	0.67	6	2136	3	0	3	0	10
TMR_00173	tmRNA links to Rfam database...	0.19	0.07	0.50	3	42189	9	0	3	6	39
TMR_00357	tmRNA links to Rfam database...	0.30	0.16	0.56	15	83001	12	3	9	0	77
TMR_00601	tmRNA links to Rfam database...	0.53	0.29	1.00	12	58984	9	0	0	9	30
TMR_00696	tmRNA links to Rfam database...	0.28	0.14	0.55	16	85049	13	0	13	0	98

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	29034
Total TN	103338742
Total FP	36107
Total FP CONTRA	4389
Total FP INCONS	27267
Total FP COMP	4451
Total FN	32459

Total Scores
MCC	0.475
Average MCC ± 95% Confidence Intervals	0.521 ± 0.017
Sensitivity	0.472
Positive Predictive Value	0.478
Nr of predictions	363

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.84	0.81	0.87	61	34121	17	2	7	8	14
ASE_00002	RNaseP_arch links to Rfam database...	0.70	0.67	0.73	49	35444	21	4	14	3	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	66	47799	34	9	21	4	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	80	57868	29	0	22	7	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.51	0.48	47	47488	55	11	40	4	46
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	57	59579	56	2	47	7	53
ASE_00009	RNaseP_arch links to Rfam database...	0.38	0.37	0.38	25	26041	42	4	36	2	42
ASE_00012	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.35	42	73801	81	7	70	4	81
ASE_00014	RNaseP_arch links to Rfam database...	0.42	0.42	0.43	44	54182	67	2	57	8	62
ASE_00017	RNaseP_nuc links to Rfam database...	0.21	0.23	0.19	15	50959	87	21	45	21	49
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	69	80478	56	1	53	2	65
ASE_00020	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	68	73803	52	8	41	3	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	94	104057	52	4	41	7	66
ASE_00022	RNaseP_bact_b links to Rfam database...	0.28	0.27	0.29	34	82911	86	6	77	3	90
ASE_00023	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.64	82	84127	49	5	41	3	45
ASE_00025	RNaseP_nuc links to Rfam database...	0.24	0.27	0.21	19	78516	120	10	61	49	52
ASE_00026	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.64	61	59590	42	3	31	8	49
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.70	0.75	88	84548	39	6	24	9	38
ASE_00029	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	64	82915	53	7	42	4	58
ASE_00030	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	88	85357	50	2	44	4	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	63	86618	58	3	52	3	63
ASE_00032	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	63	80086	57	7	44	6	55
ASE_00033	RNaseP_bact_a links to Rfam database...	0.28	0.26	0.30	32	64873	77	7	68	2	89
ASE_00035	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	28	70384	91	9	79	3	90
ASE_00036	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	64	75734	64	5	52	7	68
ASE_00037	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	39	59239	67	2	60	5	71
ASE_00038	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	43	53530	58	2	53	3	58
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78881	67	4	57	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	56	5	48	3	63
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	60	89970	74	3	67	4	85
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	77	54510	33	4	24	5	28
ASE_00046	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	36	50310	59	9	48	2	67
ASE_00047	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	75	74184	47	2	44	1	55
ASE_00052	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	59	61325	47	8	33	6	53
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	77	79281	50	4	39	7	56
ASE_00057	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	80	82083	56	8	44	4	54
ASE_00064	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	34	45357	67	6	54	7	55
ASE_00066	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	77	72273	42	2	38	2	53
ASE_00068	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	41	37598	41	2	34	5	44
ASE_00069	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	87	82897	47	5	39	3	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	56	67782	59	4	54	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	99	108668	53	4	40	9	63
ASE_00076	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	57	68156	55	2	50	3	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	48	45067	41	4	31	6	38
ASE_00078	RNaseP_bact_a links to Rfam database...	0.76	0.76	0.76	63	42988	26	3	17	6	20
ASE_00079	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	50	55518	44	2	41	1	50
ASE_00080	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	66	71516	54	5	44	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.52	50	49673	49	5	42	2	47
ASE_00082	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	85	70395	32	3	17	12	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	64	62375	47	8	34	5	46
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.58	59	53527	45	6	36	3	40
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	103	88281	32	3	23	6	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.65	67	55508	43	4	32	7	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	56	63434	60	12	44	4	57
ASE_00096	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	63441	54	4	49	1	63
ASE_00099	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	75	64513	38	1	31	6	45
ASE_00100	RNaseP_nuc links to Rfam database...	0.29	0.30	0.29	23	82135	117	6	51	60	53
ASE_00102	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	66	117700	94	7	82	5	100
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	80	64159	28	1	21	6	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	42	64158	69	8	53	8	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	79	73035	44	2	37	5	48
ASE_00108	RNaseP_nuc links to Rfam database...	0.43	0.44	0.42	28	46905	67	5	33	29	35
ASE_00111	RNaseP_nuc links to Rfam database...	0.38	0.46	0.31	26	50003	78	21	36	21	31
ASE_00112	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	85	75356	33	2	23	8	31
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	69	54514	40	5	27	8	32
ASE_00116	RNaseP_arch links to Rfam database...	0.20	0.20	0.20	13	31560	56	5	48	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	32	60628	70	5	61	4	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.82	87	62729	21	2	17	2	21
ASE_00120	RNaseP_arch links to Rfam database...	0.50	0.49	0.51	46	46880	45	4	41	0	48
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.25	23	45059	70	6	62	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	40	43276	50	2	47	1	48
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	38425	39	2	33	4	42
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	58	39265	27	0	17	10	30
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	64	53207	36	5	25	6	36
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.74	75	62733	34	3	24	7	36
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	49	39264	35	1	26	8	36
ASE_00132	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	56	50317	34	4	26	4	39
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	40	50305	61	8	50	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	52	63086	59	7	45	7	57
ASE_00136	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	65	48120	28	0	20	8	27
ASE_00137	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.77	73	48421	28	4	18	6	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	39	40393	43	4	34	5	42
ASE_00139	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	51	54190	50	2	42	6	53
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	80	70767	32	4	25	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	80	67048	38	3	30	5	42
ASE_00145	RNaseP_arch links to Rfam database...	0.45	0.44	0.46	49	70018	68	7	51	10	62
ASE_00146	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	69	70769	42	1	37	4	55
ASE_00148	RNaseP_arch links to Rfam database...	0.67	0.66	0.69	101	112428	49	4	42	3	53
ASE_00151	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	59	51912	39	10	22	7	39
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.60	0.54	44	57549	73	9	28	36	29
ASE_00154	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	62	65234	49	4	41	4	45
ASE_00155	RNaseP_arch links to Rfam database...	0.60	0.59	0.60	84	93389	61	10	45	6	58
ASE_00163	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.34	29	53216	65	5	51	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	43	52878	56	5	49	2	58
ASE_00168	RNaseP_nuc links to Rfam database...	0.29	0.38	0.23	24	60621	95	32	49	14	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	57	57194	46	7	33	6	50
ASE_00170	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.83	71	48742	24	2	13	9	22
ASE_00171	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	52	48426	40	3	35	2	42
ASE_00172	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.60	64	58890	44	5	37	2	42
ASE_00174	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	60968	56	8	46	2	56
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	74	59929	34	2	26	6	33
ASE_00176	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	52	59934	49	3	42	4	58
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	42	44166	45	7	38	0	42
ASE_00180	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	54	51267	46	3	36	7	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	63	57527	46	3	37	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	75	84128	55	5	47	3	61
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54514	34	2	28	4	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	94	73421	27	1	20	6	34
ASE_00186	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	88	78876	45	3	36	6	44
ASE_00187	RNaseP_arch links to Rfam database...	0.30	0.30	0.31	34	68524	84	7	70	7	81
ASE_00189	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	61	63093	41	5	31	5	41
ASE_00190	RNaseP_bact_b links to Rfam database...	0.59	0.57	0.62	51	45369	38	3	28	7	39
ASE_00192	RNaseP_bact_b links to Rfam database...	0.52	0.50	0.55	66	84545	59	8	47	4	67
ASE_00194	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.47	54	73422	64	8	52	4	65
ASE_00196	RNaseP_arch links to Rfam database...	0.80	0.79	0.81	59	31553	21	2	12	7	16
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.63	82	89122	60	3	46	11	63
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	68	46572	31	4	21	6	28
ASE_00204	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	67790	37	7	25	5	38
ASE_00205	RNaseP_arch links to Rfam database...	0.44	0.46	0.44	41	45962	56	8	45	3	49
ASE_00209	RNaseP_arch links to Rfam database...	0.40	0.39	0.41	34	42989	49	4	44	1	54
ASE_00210	RNaseP_arch links to Rfam database...	0.65	0.66	0.64	43	27194	25	6	18	1	22
ASE_00212	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	85	93820	64	3	53	8	63
ASE_00213	RNaseP_arch links to Rfam database...	0.74	0.73	0.76	48	27198	16	3	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	76	56180	34	3	21	10	27
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	57	48424	39	5	30	4	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.26	23	39252	66	12	53	1	59
ASE_00217	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	27	40388	63	4	51	8	63
ASE_00221	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	64517	46	2	40	4	56
ASE_00222	RNaseP_arch links to Rfam database...	0.53	0.52	0.54	81	111950	70	8	62	0	76
ASE_00227	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	65	78883	55	7	48	0	68
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	46882	47	13	30	4	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.73	61	42403	29	1	21	7	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	43	47801	56	2	49	5	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	56	38417	33	10	20	3	28
ASE_00234	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	65	75353	53	4	44	5	64
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45679	96	25	49	22	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	74	64157	36	2	28	6	40
ASE_00240	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	52	46574	45	1	38	6	41
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.68	60	43868	31	2	26	3	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	54	60968	55	1	52	2	58
ASE_00246	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	13	48121	88	17	54	17	54
ASE_00247	RNaseP_nuc links to Rfam database...	0.43	0.45	0.41	29	54215	82	8	33	41	35
ASE_00248	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.40	40	62382	61	4	55	2	74
ASE_00250	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	87	78880	40	3	33	4	44
ASE_00252	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.63	95	115288	67	2	55	10	73
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	24	36776	61	5	51	5	58
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	65	74567	61	4	55	2	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.50	46	50948	50	2	44	4	51
ASE_00259	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	48	73046	62	4	55	3	73
ASE_00263	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.58	69	70380	54	5	46	3	51
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.80	0.89	80	49051	25	1	9	15	20
ASE_00267	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	55	45069	36	2	24	10	33
ASE_00270	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.85	101	72271	24	1	17	6	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	42	55514	57	7	48	2	61
ASE_00277	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	39	48110	59	9	47	3	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	49	7	39	3	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	49	51911	47	8	35	4	49
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	66	44471	23	0	14	9	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	56	77688	71	4	67	0	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.74	73	61677	34	3	23	8	34
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	71	58211	37	4	25	8	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	93	68898	25	2	13	10	29
ASE_00286	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	35	46577	63	2	51	10	57
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.74	70	54851	31	5	20	6	33
ASE_00288	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	29	45963	66	7	57	2	64
ASE_00289	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	97	100880	52	3	45	4	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	58	81685	71	2	65	4	80
ASE_00294	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	96	114332	57	3	50	4	75
ASE_00295	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.62	68	73810	45	4	38	3	63
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	59	91673	77	9	65	3	86
ASE_00297	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	49	52871	56	8	47	1	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	51	1	46	4	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	56	49365	41	1	33	7	44
ASE_00313	RNaseP_nuc links to Rfam database...	0.68	0.70	0.67	62	62389	53	5	25	23	27
ASE_00316	RNaseP_nuc links to Rfam database...	0.66	0.64	0.67	63	107786	82	7	24	51	35
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.64	0.65	75	80084	46	11	30	5	43
ASE_00327	RNaseP_nuc links to Rfam database...	0.70	0.71	0.70	63	57201	43	9	18	16	26
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.72	73	72669	43	4	25	14	39
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.68	0.65	61	56186	52	6	27	19	29
ASE_00332	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	64	81683	66	2	61	3	74
ASE_00335	RNaseP_bact_b links to Rfam database...	0.39	0.39	0.40	45	75353	75	9	59	7	71
ASE_00337	RNaseP_nuc links to Rfam database...	0.39	0.41	0.38	29	39263	60	5	43	12	42
ASE_00338	RNaseP_nuc links to Rfam database...	0.56	0.56	0.57	55	66333	55	4	38	13	43
ASE_00339	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	63	80085	63	5	47	11	56
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	27	6	14	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	67	62381	34	1	32	1	48
ASE_00343	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	77	83324	51	8	27	16	36
ASE_00346	RNaseP_arch links to Rfam database...	0.53	0.53	0.54	51	48110	52	4	40	8	46
ASE_00353	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	60	57863	51	4	43	4	47
ASE_00359	RNaseP_arch links to Rfam database...	0.09	0.10	0.09	8	42688	82	9	73	0	72
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.31	0.31	20	29339	50	11	33	6	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	65	75343	61	11	47	3	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	54	48114	40	2	35	3	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	52	51266	49	3	39	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	76	54185	32	1	23	8	29
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	58550	63	10	52	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.52	0.48	45	42977	52	4	45	3	41
ASE_00369	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.61	65	55839	45	2	39	4	42
ASE_00370	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	46	41818	45	5	36	4	38
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	36	6	24	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	59	44765	28	3	23	2	29
ASE_00375	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.85	82	60281	21	0	15	6	28
ASE_00376	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	62	56852	47	1	38	8	43
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	75	57528	33	3	24	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	42	45971	53	3	40	10	47
ASE_00380	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	58	54855	38	6	27	5	41
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.68	56	41823	31	6	20	5	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	44	54516	62	5	50	7	61
ASE_00384	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48425	40	3	35	2	39
ASE_00385	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	40	41824	46	5	36	5	41
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	50307	49	7	40	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	58	55848	44	6	33	5	46
ASE_00388	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	50	45673	41	2	28	11	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	44	47808	50	2	41	7	49
ASE_00394	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	70	46882	24	2	17	5	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	41528	37	3	30	4	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	44	41533	43	4	35	4	39
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	76	54518	29	2	19	8	29
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	60	55851	43	1	33	9	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	66	57871	38	1	32	5	40
ASE_00401	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.59	75	76901	53	7	45	1	51
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	42406	22	2	15	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	68	55848	34	0	29	5	39
ASE_00404	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	35	42991	54	1	44	9	50
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	25	1	14	10	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	41	49370	53	5	39	9	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	48	58209	57	9	45	3	57
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.53	47	44462	45	13	29	3	34
ASE_00414	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	43	46269	55	4	44	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.66	67	54845	36	6	28	2	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	79	77301	49	3	38	8	48
ASE_00417	RNaseP_arch links to Rfam database...	0.35	0.36	0.35	36	54511	70	9	59	2	64
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38701	67	9	55	3	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.75	76	54845	27	9	16	2	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.59	63	56846	44	7	37	0	46
ASE_00426	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.42	45	60969	61	5	56	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	93	76520	29	3	20	6	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	46877	33	5	21	7	29
ASE_00431	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	33	46272	59	6	49	4	62
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.60	0.63	66	68161	46	5	33	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	56	79281	68	0	64	4	79
ASE_00438	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.50	55	65957	54	4	50	0	61
ASE_00441	RNaseP_bact_a links to Rfam database...	0.81	0.77	0.86	86	64161	24	1	13	10	26
ASE_00447	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	60278	33	1	26	6	43
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.23	26	64147	95	8	80	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	76	70762	43	3	35	5	49
CRW_00013	Intron_gpI links to Rfam database...	0.21	0.21	0.21	24	103627	115	11	78	26	91
CRW_00016	Intron_gpI links to Rfam database...	0.79	0.75	0.83	90	77313	31	5	13	13	30
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.33	140	1015595	312	49	241	22	292
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.42	181	1123819	271	41	209	21	280
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00610	Intron_gpI links to Rfam database...	0.43	0.43	0.42	35	36232	49	9	39	1	46
CRW_00613	Intron_gpI links to Rfam database...	0.89	0.85	0.93	66	34909	13	0	5	8	12
CRW_00614	Intron_gpI links to Rfam database...	0.13	0.16	0.11	9	121688	143	18	56	69	48
CRW_00618	Intron_gpI links to Rfam database...	0.19	0.20	0.18	12	56212	81	8	48	25	49
CRW_00619	Intron_gpI links to Rfam database...	0.36	0.37	0.34	27	164946	145	7	45	93	46
CRW_00620	Intron_gpI links to Rfam database...	0.26	0.30	0.23	19	150891	164	18	47	99	44
CRW_00621	Intron_gpI links to Rfam database...	0.41	0.41	0.42	29	153112	137	9	31	97	42
CRW_00623	Intron_gpI links to Rfam database...	0.19	0.19	0.20	16	129714	133	15	50	68	67
CRW_00633	Intron_gpI links to Rfam database...	0.44	0.43	0.44	46	63441	61	13	46	2	60
CRW_00634	Intron_gpI links to Rfam database...	0.28	0.30	0.26	28	64513	83	12	67	4	66
CRW_00670	Intron_gpI links to Rfam database...	0.54	0.55	0.54	66	70002	59	12	45	2	54
CRW_00671	Intron_gpI links to Rfam database...	0.71	0.68	0.74	79	62728	34	1	27	6	38
CRW_00672	Intron_gpI links to Rfam database...	0.75	0.77	0.74	85	72275	40	6	24	10	26
CRW_00674	Intron_gpI links to Rfam database...	0.66	0.67	0.66	83	83310	52	9	34	9	41
CRW_00676	Intron_gpI links to Rfam database...	0.55	0.57	0.54	66	93405	75	12	45	18	49
CRW_00692	Intron_gpI links to Rfam database...	0.23	0.24	0.21	22	68530	90	27	56	7	68
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215568	391	45	317	29	356
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.27	0.28	0.26	107	1201617	345	45	256	44	277
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.52	0.52	243	1401506	300	34	192	74	227
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977486	272	36	221	15	276
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2678	24	1	22	1	23
PDB_00827	Intron_gpI links to Rfam database...	0.65	0.59	0.72	48	26961	21	0	19	2	33
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	49	44166	42	4	34	4	54
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01092	glmS links to Rfam database...	0.73	0.63	0.85	33	10114	8	0	6	2	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305
RFA_00597	Telomerase-vert links to Rfam database...	0.27	0.29	0.26	32	97779	107	18	74	15	77
RFA_00598	Telomerase-vert links to Rfam database...	0.69	0.66	0.71	67	84572	57	4	23	30	34
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.74	0.72	82	101361	60	10	22	28	29
RFA_00600	Telomerase-vert links to Rfam database...	0.63	0.71	0.56	71	120169	87	30	25	32	29
RFA_00601	Telomerase-vert links to Rfam database...	0.42	0.46	0.39	52	99103	95	33	47	15	62
RFA_00602	Telomerase-vert links to Rfam database...	0.60	0.63	0.57	73	101347	77	23	32	22	43
RFA_00632	HDV_ribozyme links to Rfam database...	0.39	0.39	0.39	11	4067	17	2	15	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	16	2	14	0	16
RFA_00767	Corona_pk3 links to Rfam database...	0.44	0.44	0.44	8	1873	10	1	9	0	10
RFA_00768	Corona_pk3 links to Rfam database...	0.45	0.44	0.47	8	1874	10	1	8	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.61	0.56	0.67	10	2001	8	0	5	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	3	1	0	2	8
RFA_00779	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	18	2	14	2	16
RFA_00809	RydC links to Rfam database...	0.37	0.38	0.38	6	2129	10	1	9	0	10
TMR_00173	tmRNA links to Rfam database...	0.30	0.36	0.25	15	42135	72	17	28	27	27
TMR_00357	tmRNA links to Rfam database...	0.29	0.32	0.28	29	82923	92	22	54	16	63
TMR_00601	tmRNA links to Rfam database...	0.65	0.60	0.71	25	58961	73	0	10	63	17
TMR_00696	tmRNA links to Rfam database...	0.47	0.47	0.46	54	84961	78	11	52	15	60

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(seed)

2. Individual counts for RNAalifold(seed) [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]