CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	TurboFold(20)		CRWrnafold
MCC	0.741	>	0.456
Average MCC ± 95% Confidence Intervals	0.742 ± 0.012	>	0.457 ± 0.023
Sensitivity	0.685	>	0.447
Positive Predictive Value	0.802	>	0.467
Total TP	14759	>	9639
Total TN	12430329	>	12428106
Total FP	4799	<	11866
Total FP CONTRA	518	<	1386
Total FP INCONS	3133	<	9608
Total FP COMP	1148	>	872
Total FN	6789	<	11909
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of TurboFold(20) and CRWrnafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for TurboFold(20) and CRWrnafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for TurboFold(20) and CRWrnafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(20) and CRWrnafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for TurboFold(20) and CRWrnafold).

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Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

Total Base Pair Counts
Total TP	14759
Total TN	12430329
Total FP	4799
Total FP CONTRA	518
Total FP INCONS	3133
Total FP COMP	1148
Total FN	6789

Total Scores
MCC	0.741
Average MCC ± 95% Confidence Intervals	0.742 ± 0.012
Sensitivity	0.685
Positive Predictive Value	0.802
Nr of predictions	209

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2. Individual counts for TurboFold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	76	47803	17	5	11	1	21
ASE_00005	RNaseP_bact_a links to Rfam database...	0.85	0.76	0.95	89	57876	10	1	4	5	28
ASE_00006	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	47497	19	3	14	2	21
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	78	59588	26	1	18	7	32
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	84	73820	22	3	13	6	39
ASE_00018	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	105	80484	14	1	11	2	29
ASE_00020	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	81	73817	24	2	20	2	45
ASE_00021	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	106	104071	26	1	18	7	54
ASE_00022	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	86	82926	22	3	13	6	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.82	0.76	0.89	96	84558	20	1	11	8	30
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	73	70401	31	2	24	5	45
ASE_00037	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	74	59252	16	1	13	2	36
ASE_00038	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	75	53543	12	1	9	2	26
ASE_00040	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	92	78891	26	1	19	6	41
ASE_00041	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	72	57546	13	0	12	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	100	89981	22	2	17	3	45
ASE_00044	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	83	54515	21	3	14	4	22
ASE_00064	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	63	45377	19	0	11	8	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	37608	8	1	6	1	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	89	67788	22	1	18	3	30
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	110	108683	24	2	16	6	52
ASE_00077	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	56	45079	22	2	13	7	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	64	42998	17	0	9	8	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	76	71533	26	0	22	4	47
ASE_00081	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	67	49688	17	2	13	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	75	70413	24	0	12	12	41
ASE_00083	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	85	62386	12	0	10	2	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	71	53544	20	1	12	7	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	96	88296	24	1	17	6	48
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	67	55518	31	1	25	5	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	84	63451	16	1	10	5	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	89	64518	19	1	12	6	31
ASE_00104	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	84	64158	25	1	18	6	35
ASE_00105	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	61	64180	25	1	19	5	50
ASE_00107	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	93	73043	19	1	16	2	34
ASE_00115	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	12	0	9	3	28
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	60636	26	1	22	3	35
ASE_00119	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	68	62757	12	0	10	2	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	53	38435	19	1	14	4	32
ASE_00125	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.95	60	39277	7	0	3	4	28
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	63	40393	17	1	13	3	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	77	53214	15	1	9	5	23
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	79	62740	21	1	15	5	32
ASE_00131	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	39275	16	1	10	5	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.76	68	50313	28	2	20	6	27
ASE_00135	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	63098	26	0	15	11	32
ASE_00136	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.94	74	48126	11	0	5	6	18
ASE_00137	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	78	48426	14	3	9	2	20
ASE_00138	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	58	40396	18	1	15	2	23
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	82	70776	21	3	15	3	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	95	67056	14	3	7	4	27
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	79	70772	30	1	24	5	45
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.67	0.67	49	57557	63	2	22	39	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	63	53218	29	2	18	9	30
ASE_00165	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	52884	26	4	20	2	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	72	48747	11	2	7	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.93	74	48436	10	0	6	4	20
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.85	79	58903	20	1	13	6	27
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	64	60997	15	0	14	1	45
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.74	68	59939	29	3	21	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	62	44182	12	1	8	3	22
ASE_00180	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	77	51272	16	2	9	5	23
ASE_00181	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	76	57537	24	0	17	7	30
ASE_00182	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	89	84150	17	1	15	1	47
ASE_00183	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	80	61322	29	0	23	6	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	80	54520	24	1	14	9	22
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	92	73426	23	1	17	5	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	98	78886	26	3	16	7	34
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	16	1	12	3	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	101	89127	31	3	22	6	44
ASE_00198	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	72	52565	14	3	10	1	30
ASE_00203	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	77	46580	10	3	5	2	19
ASE_00212	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	113	93832	22	2	14	6	35
ASE_00214	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	74	56187	24	2	17	5	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.78	54	48447	23	0	15	8	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	66	39263	13	3	8	2	16
ASE_00217	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	61	40394	17	2	13	2	29
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	79	64527	19	1	13	5	38
ASE_00228	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	65	46894	17	3	9	5	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	64	42404	20	5	13	2	23
ASE_00231	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	75	47806	15	4	10	1	21
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	38424	14	4	8	2	17
ASE_00234	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.77	75	75369	25	2	20	3	54
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	74	64166	24	4	17	3	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	55	43884	22	1	16	5	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.84	0.80	0.87	90	60972	18	1	12	5	22
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.77	74	62385	26	0	22	4	40
ASE_00254	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	64	36783	16	3	6	7	18
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	85	74583	25	2	21	2	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	71	50955	19	1	13	5	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.88	93	70394	16	2	11	3	27
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	60	45078	22	0	12	10	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	72279	28	2	21	5	40
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.77	58	55536	21	3	14	4	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	56	48136	15	1	12	2	35
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	74	53214	17	2	11	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	62	51923	24	1	17	6	36
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	63	44482	14	0	6	8	25
ASE_00282	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	86	77708	24	3	18	3	41
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	75	61686	19	3	12	4	32
ASE_00284	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	84	58213	22	2	12	8	24
ASE_00285	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	84	68906	23	2	14	7	38
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	46585	19	1	8	10	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	74	54858	19	2	12	5	29
ASE_00292	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	23	3	15	5	37
ASE_00294	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	127	114342	18	1	11	6	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	99	91680	31	2	25	4	46
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	61	52889	27	2	23	2	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	55	67441	34	1	31	2	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.70	0.83	83	80100	24	5	12	7	35
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.63	0.86	71	72688	24	1	11	12	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	25	2	16	7	37
ASE_00335	RNaseP_bact_b links to Rfam database...	0.78	0.72	0.83	84	75365	26	5	12	9	32
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	45976	24	4	13	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	83	62381	19	2	15	2	32
ASE_00353	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	74	57876	25	1	19	5	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.73	68	75373	26	0	25	1	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	66	48120	21	1	18	2	25
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.88	71	51279	14	0	10	4	23
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	74	54195	21	0	16	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	61	58566	28	3	23	2	37
ASE_00367	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.79	59	42996	26	0	16	10	27
ASE_00369	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	85	55848	17	0	12	5	22
ASE_00370	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	65	41832	15	0	8	7	19
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51916	25	3	20	2	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	66	44773	15	0	11	4	22
ASE_00376	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	71	56859	26	1	22	3	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	85	57532	18	2	11	5	22
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	23	3	16	4	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	69	41829	11	0	7	4	15
ASE_00383	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	80	54522	16	1	12	3	25
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	72	48433	20	0	11	9	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	73	50314	21	0	16	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	71	55854	22	1	19	2	33
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	62	45681	20	0	10	10	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	65	42121	18	0	9	9	20
ASE_00393	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	55	47821	26	1	18	7	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	77	46890	7	0	4	3	16
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	64	41536	26	1	15	10	20
ASE_00396	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	67	41540	15	1	8	6	16
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	78	54526	16	1	10	5	27
ASE_00398	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	73	55862	18	0	10	8	31
ASE_00400	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57881	26	1	19	6	37
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	71	76926	33	4	27	2	55
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	67	42410	12	0	9	3	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	67	55858	24	0	20	4	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	61	42998	22	0	12	10	24
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	70	48747	21	0	11	10	24
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	47	49378	33	10	20	3	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.73	66	58220	28	3	22	3	39
ASE_00413	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	54	44475	26	5	17	4	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	68	54857	23	1	20	2	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	97	77303	29	3	18	8	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	81	54857	11	2	6	3	22
ASE_00422	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	73	46883	21	3	12	6	21
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	77	56858	23	3	15	5	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	92	76522	28	3	19	6	33
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.77	72	46877	23	5	17	1	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.62	67	79293	43	1	40	2	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	77	64174	11	0	10	1	35
ASE_00448	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	76	64166	27	2	17	8	36
ASE_00451	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	88	70769	24	1	18	5	37
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
RFA_00599	Telomerase-vert links to Rfam database...	0.74	0.74	0.74	82	101364	50	9	20	21	29
RFA_00601	Telomerase-vert links to Rfam database...	0.76	0.75	0.77	85	99124	46	3	23	20	29
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.84	0.85	98	101360	32	5	12	15	18
TMR_00017	tmRNA links to Rfam database...	0.60	0.55	0.67	56	67077	32	7	21	4	46
TMR_00018	tmRNA links to Rfam database...	0.49	0.49	0.49	45	64529	50	12	34	4	47
TMR_00038	tmRNA links to Rfam database...	0.72	0.67	0.76	74	71156	29	6	17	6	36
TMR_00042	tmRNA links to Rfam database...	0.74	0.69	0.78	68	62748	25	2	17	6	30
TMR_00046	tmRNA links to Rfam database...	0.64	0.60	0.67	58	62749	34	4	24	6	38
TMR_00048	tmRNA links to Rfam database...	0.68	0.66	0.71	63	64891	35	6	20	9	32
TMR_00080	tmRNA links to Rfam database...	0.64	0.53	0.76	51	70433	16	6	10	0	45
TMR_00082	tmRNA links to Rfam database...	0.63	0.54	0.73	52	67825	20	6	13	1	44
TMR_00123	tmRNA links to Rfam database...	0.66	0.60	0.72	61	66345	29	3	21	5	40
TMR_00137	tmRNA links to Rfam database...	0.52	0.47	0.57	42	61001	37	9	23	5	47
TMR_00142	tmRNA links to Rfam database...	0.66	0.65	0.67	66	70778	40	8	24	8	36
TMR_00207	tmRNA links to Rfam database...	0.50	0.47	0.53	48	72300	47	8	34	5	55
TMR_00257	tmRNA links to Rfam database...	0.68	0.59	0.78	58	67087	22	1	15	6	40
TMR_00271	tmRNA links to Rfam database...	0.65	0.62	0.69	56	64180	34	6	19	9	35
TMR_00332	tmRNA links to Rfam database...	0.58	0.55	0.63	54	67075	37	5	27	5	45
TMR_00366	tmRNA links to Rfam database...	0.79	0.76	0.83	76	67804	27	3	13	11	24
TMR_00378	tmRNA links to Rfam database...	0.77	0.75	0.79	73	67804	32	4	15	13	24
TMR_00399	tmRNA links to Rfam database...	0.44	0.41	0.46	39	64896	52	12	33	7	55
TMR_00404	tmRNA links to Rfam database...	0.67	0.66	0.68	61	67438	45	7	22	16	31
TMR_00427	tmRNA links to Rfam database...	0.67	0.60	0.74	58	67450	25	8	12	5	39
TMR_00443	tmRNA links to Rfam database...	0.61	0.57	0.66	59	67071	35	5	26	4	45
TMR_00451	tmRNA links to Rfam database...	0.49	0.46	0.53	41	63469	40	11	25	4	48
TMR_00458	tmRNA links to Rfam database...	0.56	0.49	0.63	46	63473	30	8	19	3	47
TMR_00469	tmRNA links to Rfam database...	0.78	0.74	0.83	74	64531	24	5	10	9	26
TMR_00472	tmRNA links to Rfam database...	0.79	0.73	0.85	71	64536	24	7	6	11	26
TMR_00519	tmRNA links to Rfam database...	0.52	0.48	0.56	46	63108	47	11	25	11	49
TMR_00520	tmRNA links to Rfam database...	0.51	0.48	0.54	48	63101	51	14	27	10	51
TMR_00522	tmRNA links to Rfam database...	0.55	0.52	0.60	50	63106	43	11	23	9	47
TMR_00528	tmRNA links to Rfam database...	0.54	0.52	0.57	50	63102	48	12	26	10	47
TMR_00540	tmRNA links to Rfam database...	0.49	0.44	0.53	46	73450	47	9	31	7	58
TMR_00568	tmRNA links to Rfam database...	0.77	0.69	0.86	68	60647	21	1	10	10	31
TMR_00571	tmRNA links to Rfam database...	0.78	0.73	0.84	72	60640	27	2	12	13	27
TMR_00580	tmRNA links to Rfam database...	0.78	0.73	0.84	73	60639	26	3	11	12	27
TMR_00584	tmRNA links to Rfam database...	0.78	0.71	0.86	69	60995	21	3	8	10	28
TMR_00586	tmRNA links to Rfam database...	0.74	0.70	0.78	68	60988	28	6	13	9	29
TMR_00616	tmRNA links to Rfam database...	0.77	0.72	0.83	71	67075	21	4	11	6	28
TMR_00699	tmRNA links to Rfam database...	0.66	0.58	0.76	59	67083	24	1	18	5	43
TMR_00702	tmRNA links to Rfam database...	0.60	0.51	0.71	51	67089	26	5	16	5	49
TMR_00703	tmRNA links to Rfam database...	0.81	0.73	0.90	72	67448	13	1	7	5	27

^top

Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

Total Base Pair Counts
Total TP	9639
Total TN	12428106
Total FP	11866
Total FP CONTRA	1386
Total FP INCONS	9608
Total FP COMP	872
Total FN	11909

Total Scores
MCC	0.456
Average MCC ± 95% Confidence Intervals	0.457 ± 0.023
Sensitivity	0.447
Positive Predictive Value	0.467
Nr of predictions	209

^top

2. Individual counts for CRWrnafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.69	66	47800	30	9	20	1	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	56	57863	51	3	48	0	61
ASE_00006	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	47495	65	8	56	1	66
ASE_00007	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	36	59585	65	3	61	1	74
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	51	73800	75	6	63	6	72
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	68	80480	54	4	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	75	73809	39	6	30	3	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.62	88	104055	57	8	45	4	72
ASE_00022	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.51	57	82917	58	9	45	4	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.57	0.55	0.59	69	84550	54	9	38	7	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.12	0.12	0.13	14	70389	100	12	85	3	104
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	43	59240	59	5	52	2	67
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	54	53533	46	4	37	5	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	57	78883	69	4	59	6	76
ASE_00041	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	57536	61	5	50	6	69
ASE_00042	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	58	89970	75	6	66	3	87
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.79	80	54514	26	4	17	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	45363	66	2	55	9	58
ASE_00068	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	17	37599	61	6	53	2	68
ASE_00074	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	58	67783	56	4	51	1	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.68	97	108669	49	5	40	4	65
ASE_00077	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	26	45072	58	8	44	6	60
ASE_00078	RNaseP_bact_a links to Rfam database...	0.12	0.12	0.12	10	42988	78	4	69	5	73
ASE_00080	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.36	41	71518	72	5	67	0	82
ASE_00081	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	29	49686	56	3	52	1	68
ASE_00082	RNaseP_bact_a links to Rfam database...	0.45	0.41	0.49	48	70402	60	1	49	10	68
ASE_00083	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.79	78	62382	28	1	20	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	38	53532	60	6	52	2	61
ASE_00087	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	78	88285	48	3	44	1	66
ASE_00090	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.61	62	55510	44	2	37	5	39
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	62	63436	53	9	39	5	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	75	64505	41	4	36	1	45
ASE_00104	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	52	64153	57	3	53	1	67
ASE_00105	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	51	64157	59	7	46	6	60
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.69	81	73036	37	2	34	1	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.69	64	54522	37	4	25	8	37
ASE_00118	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	48	60631	53	2	45	6	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	91	62732	15	2	10	3	17
ASE_00123	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.37	28	38427	54	0	48	6	57
ASE_00125	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	44	39255	42	4	37	1	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.39	30	40393	49	6	41	2	52
ASE_00128	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	60	53208	37	6	27	4	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	67	62735	34	3	30	1	44
ASE_00131	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	41	39265	39	1	33	5	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	40	50310	59	5	48	6	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.46	50	63082	60	7	51	2	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	41	48114	54	8	42	4	51
ASE_00137	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.37	36	48419	62	3	58	1	62
ASE_00138	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	19	40395	61	5	51	5	62
ASE_00140	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	74	70769	34	7	26	1	51
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	81	67050	35	3	27	5	41
ASE_00146	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	58	70765	54	8	45	1	66
ASE_00153	RNaseP_nuc links to Rfam database...	0.68	0.68	0.67	50	57555	66	2	23	41	23
ASE_00163	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	53210	73	5	59	9	66
ASE_00165	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.46	43	52882	50	6	44	0	58
ASE_00170	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	60	48739	34	6	23	5	33
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	42	48429	45	5	40	0	52
ASE_00172	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	57	58897	43	3	39	1	49
ASE_00174	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	49	60976	53	4	46	3	60
ASE_00175	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	26	59926	86	2	77	7	81
ASE_00179	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	47	44169	39	7	30	2	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	53	51268	40	8	31	1	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	57527	64	2	57	5	62
ASE_00182	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	67	84130	58	4	54	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	60	61319	49	5	41	3	53
ASE_00184	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	51	54516	49	4	44	1	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	79	73417	44	5	35	4	49
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	79	78882	47	4	38	5	53
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.51	0.53	46	45365	46	7	33	6	44
ASE_00197	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89122	56	5	47	4	66
ASE_00198	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	57	52550	43	7	36	0	45
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	39	5	29	5	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.61	82	93826	57	4	49	4	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	73	56181	37	4	22	11	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	48422	51	4	46	1	55
ASE_00216	RNaseP_bact_a links to Rfam database...	0.71	0.71	0.72	58	39259	23	7	16	0	24
ASE_00217	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.28	22	40391	58	3	54	1	68
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	51	64527	45	1	41	3	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.35	29	46887	61	9	46	6	57
ASE_00229	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.46	37	42405	47	5	39	3	50
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.63	60	47799	37	7	29	1	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	38420	27	8	18	1	27
ASE_00234	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	64	75350	55	4	48	3	65
ASE_00238	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	62	64152	51	3	44	4	52
ASE_00241	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	45	43873	46	2	36	8	42
ASE_00242	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	51	60973	54	3	48	3	61
ASE_00248	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	31	62378	72	7	65	0	83
ASE_00254	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.64	50	36778	34	3	25	6	32
ASE_00255	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.61	72	74573	52	4	42	6	58
ASE_00257	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50944	49	6	39	4	46
ASE_00263	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.77	92	70380	29	6	22	1	28
ASE_00267	RNaseP_bact_a links to Rfam database...	0.17	0.17	0.17	15	45064	77	8	63	6	73
ASE_00270	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	76	72273	41	7	34	0	52
ASE_00274	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.42	42	55512	57	10	47	0	61
ASE_00277	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	27	48117	61	8	53	0	64
ASE_00279	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.31	29	53208	64	10	54	0	72
ASE_00280	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	41	51907	56	5	50	1	57
ASE_00281	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	39	44472	41	1	39	1	49
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	67	77699	54	7	42	5	60
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.75	77	61673	30	3	23	4	30
ASE_00284	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	55	58206	52	7	43	2	53
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	58	68897	54	7	44	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.29	26	46574	70	8	57	5	66
ASE_00287	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.36	33	54854	63	5	54	4	70
ASE_00292	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	59	81687	65	5	59	1	79
ASE_00294	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	61	114334	89	2	84	3	110
ASE_00296	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	30	91671	105	6	99	0	115
ASE_00297	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	53	52877	48	5	40	3	45
ASE_00298	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	44	67425	66	1	58	7	69
ASE_00318	RNaseP_bact_b links to Rfam database...	0.53	0.53	0.54	62	80086	56	11	41	4	56
ASE_00328	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.58	60	72668	47	7	36	4	52
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	74	81680	58	5	51	2	64
ASE_00335	RNaseP_bact_b links to Rfam database...	0.53	0.52	0.55	60	75356	56	10	40	6	56
ASE_00340	RNaseP_bact_a links to Rfam database...	0.32	0.32	0.32	27	45971	62	10	48	4	58
ASE_00342	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	60	62378	47	2	41	4	55
ASE_00353	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	41	57863	70	3	63	4	66
ASE_00361	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	57	75352	61	9	48	4	70
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	56	48117	36	4	28	4	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.34	32	51267	68	4	57	7	62
ASE_00364	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	44	54189	58	4	48	6	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.41	41	58554	62	13	45	4	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.26	23	42982	69	8	58	3	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	68	55844	38	4	29	5	39
ASE_00370	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.51	42	41823	47	4	36	7	42
ASE_00372	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	59	51902	44	8	34	2	41
ASE_00374	RNaseP_bact_a links to Rfam database...	0.19	0.18	0.20	16	44769	65	13	52	0	72
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	45	56851	57	3	54	0	60
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	38	45971	53	6	41	6	51
ASE_00382	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.42	35	41822	52	7	41	4	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	33	54517	65	4	61	0	72
ASE_00384	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.31	28	48427	61	3	58	0	64
ASE_00386	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.41	37	50312	58	7	47	4	59
ASE_00387	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	47	55844	57	5	49	3	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.33	0.33	0.33	29	45665	65	5	54	6	60
ASE_00390	RNaseP_bact_a links to Rfam database...	0.20	0.19	0.21	16	42119	67	2	58	7	69
ASE_00393	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.26	22	47809	71	4	60	7	71
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	51	46882	39	3	35	1	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.39	33	41532	58	4	47	7	51
ASE_00396	RNaseP_bact_a links to Rfam database...	0.13	0.13	0.14	11	41535	72	4	66	2	72
ASE_00397	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	52	54520	47	3	40	4	53
ASE_00398	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	58	55851	45	3	33	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	55	57867	49	4	44	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.58	72	76904	52	11	41	0	54
ASE_00402	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	42408	56	2	53	1	62
ASE_00403	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	50	55847	52	3	45	4	57
ASE_00404	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	20	42991	65	4	56	5	65
ASE_00406	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.26	23	48739	73	5	61	7	71
ASE_00411	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	21	49369	71	5	60	6	68
ASE_00412	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	58	58214	42	6	33	3	47
ASE_00413	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.27	24	44462	65	14	51	0	57
ASE_00415	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.42	42	54845	61	9	50	2	61
ASE_00416	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	57	77301	69	8	55	6	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	70	54854	27	3	19	5	33
ASE_00422	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	65	46882	30	2	22	6	29
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	71	56844	39	9	29	1	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	63	76522	55	8	43	4	62
ASE_00430	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	64	46881	32	3	23	6	33
ASE_00437	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	43	79274	84	6	78	0	92
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	1	9	10	27
ASE_00448	RNaseP_bact_a links to Rfam database...	0.18	0.18	0.18	20	64148	99	6	87	6	92
ASE_00451	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	51	70759	66	3	63	0	74
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.59	16	4344	12	1	10	1	18
RFA_00599	Telomerase-vert links to Rfam database...	0.69	0.72	0.67	80	101355	60	17	23	20	31
RFA_00601	Telomerase-vert links to Rfam database...	0.51	0.54	0.50	61	99112	81	10	52	19	53
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	61	101346	90	13	55	22	55
TMR_00017	tmRNA links to Rfam database...	0.49	0.47	0.51	48	67067	52	11	35	6	54
TMR_00018	tmRNA links to Rfam database...	0.58	0.60	0.57	55	64523	47	13	29	5	37
TMR_00038	tmRNA links to Rfam database...	0.18	0.19	0.18	21	71137	101	12	83	6	89
TMR_00042	tmRNA links to Rfam database...	0.32	0.32	0.32	31	62739	68	8	57	3	67
TMR_00046	tmRNA links to Rfam database...	0.42	0.43	0.41	41	62736	64	12	46	6	55
TMR_00048	tmRNA links to Rfam database...	0.13	0.14	0.13	13	64876	98	11	80	7	82
TMR_00080	tmRNA links to Rfam database...	0.25	0.26	0.24	25	70396	79	21	58	0	71
TMR_00082	tmRNA links to Rfam database...	0.22	0.22	0.21	21	67798	83	19	58	6	75
TMR_00123	tmRNA links to Rfam database...	0.60	0.58	0.63	59	66336	40	6	29	5	42
TMR_00137	tmRNA links to Rfam database...	0.26	0.27	0.25	24	60978	77	17	56	4	65
TMR_00142	tmRNA links to Rfam database...	0.45	0.46	0.45	47	70771	69	16	42	11	55
TMR_00207	tmRNA links to Rfam database...	0.30	0.31	0.30	32	72282	83	7	69	7	71
TMR_00257	tmRNA links to Rfam database...	0.51	0.52	0.50	51	67058	57	10	42	5	47
TMR_00271	tmRNA links to Rfam database...	0.32	0.33	0.32	30	64166	73	10	55	8	61
TMR_00332	tmRNA links to Rfam database...	0.31	0.31	0.31	31	67062	76	14	54	8	68
TMR_00366	tmRNA links to Rfam database...	0.28	0.29	0.27	29	67789	85	19	59	7	71
TMR_00378	tmRNA links to Rfam database...	0.33	0.34	0.32	33	67792	78	13	58	7	64
TMR_00399	tmRNA links to Rfam database...	0.18	0.19	0.17	18	64876	88	17	69	2	76
TMR_00404	tmRNA links to Rfam database...	0.20	0.22	0.18	20	67418	93	24	66	3	72
TMR_00427	tmRNA links to Rfam database...	0.16	0.16	0.15	16	67421	96	15	76	5	81
TMR_00443	tmRNA links to Rfam database...	0.41	0.42	0.41	44	67053	72	15	49	8	60
TMR_00451	tmRNA links to Rfam database...	0.26	0.27	0.26	24	63454	75	9	59	7	65
TMR_00458	tmRNA links to Rfam database...	0.10	0.11	0.10	10	63450	94	8	78	8	83
TMR_00469	tmRNA links to Rfam database...	0.41	0.43	0.39	43	64511	66	15	51	0	57
TMR_00472	tmRNA links to Rfam database...	0.30	0.32	0.28	31	64509	82	20	60	2	66
TMR_00519	tmRNA links to Rfam database...	0.13	0.14	0.12	13	63083	94	17	77	0	82
TMR_00520	tmRNA links to Rfam database...	0.23	0.23	0.23	23	63088	87	8	71	8	76
TMR_00522	tmRNA links to Rfam database...	0.07	0.07	0.07	7	63085	104	14	84	6	90
TMR_00528	tmRNA links to Rfam database...	0.26	0.26	0.27	25	63096	77	16	53	8	72
TMR_00540	tmRNA links to Rfam database...	0.36	0.37	0.36	38	73429	70	18	51	1	66
TMR_00568	tmRNA links to Rfam database...	0.36	0.37	0.36	37	60622	72	15	52	5	62
TMR_00571	tmRNA links to Rfam database...	0.50	0.49	0.52	49	60631	55	6	40	9	50
TMR_00580	tmRNA links to Rfam database...	0.27	0.26	0.28	26	60633	75	6	61	8	74
TMR_00584	tmRNA links to Rfam database...	0.55	0.58	0.53	56	60969	53	10	40	3	41
TMR_00586	tmRNA links to Rfam database...	0.27	0.27	0.27	26	60978	76	12	59	5	71
TMR_00616	tmRNA links to Rfam database...	0.42	0.43	0.40	43	67054	70	10	54	6	56
TMR_00699	tmRNA links to Rfam database...	0.45	0.45	0.44	46	67057	58	10	48	0	56
TMR_00702	tmRNA links to Rfam database...	0.32	0.32	0.33	32	67063	70	8	58	4	68
TMR_00703	tmRNA links to Rfam database...	0.41	0.41	0.41	41	67427	62	9	51	2	58

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

2. Individual counts for TurboFold(20) [ download as .csv ]

Performance of CRWrnafold - scored lower in this pairwise comparison

1. Total counts & total scores for CRWrnafold

2. Individual counts for CRWrnafold [ download as .csv ]