CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	TurboFold(20)		Murlet(20)
MCC	0.730	>	0.550
Average MCC ± 95% Confidence Intervals	0.731 ± 0.015	>	0.555 ± 0.021
Sensitivity	0.675	>	0.416
Positive Predictive Value	0.791	>	0.727
Total TP	10301	>	6354
Total TN	9005057	<	9009349
Total FP	3640	>	2664
Total FP CONTRA	416	>	335
Total FP INCONS	2312	>	2048
Total FP COMP	912	>	281
Total FN	4962	<	8909
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of TurboFold(20) and Murlet(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for TurboFold(20) and Murlet(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for TurboFold(20) and Murlet(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for TurboFold(20) and Murlet(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for TurboFold(20) and Murlet(20)).

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Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

Total Base Pair Counts
Total TP	10301
Total TN	9005057
Total FP	3640
Total FP CONTRA	416
Total FP INCONS	2312
Total FP COMP	912
Total FN	4962

Total Scores
MCC	0.730
Average MCC ± 95% Confidence Intervals	0.731 ± 0.015
Sensitivity	0.675
Positive Predictive Value	0.791
Nr of predictions	150

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2. Individual counts for TurboFold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	76	47803	17	5	11	1	21
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	78	59588	26	1	18	7	32
ASE_00018	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	105	80484	14	1	11	2	29
ASE_00022	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	86	82926	22	3	13	6	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.82	0.76	0.89	96	84558	20	1	11	8	30
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	73	70401	31	2	24	5	45
ASE_00040	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	92	78891	26	1	19	6	41
ASE_00064	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	63	45377	19	0	11	8	26
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	37608	8	1	6	1	25
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	110	108683	24	2	16	6	52
ASE_00077	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	56	45079	22	2	13	7	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	64	42998	17	0	9	8	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	76	71533	26	0	22	4	47
ASE_00081	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	67	49688	17	2	13	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	75	70413	24	0	12	12	41
ASE_00083	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	85	62386	12	0	10	2	25
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	71	53544	20	1	12	7	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	96	88296	24	1	17	6	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	84	63451	16	1	10	5	29
ASE_00104	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	84	64158	25	1	18	6	35
ASE_00107	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	93	73043	19	1	16	2	34
ASE_00115	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	12	0	9	3	28
ASE_00119	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	68	62757	12	0	10	2	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	53	38435	19	1	14	4	32
ASE_00135	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.84	77	63098	26	0	15	11	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	58	40396	18	1	15	2	23
ASE_00142	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.90	95	67056	14	3	7	4	27
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	79	70772	30	1	24	5	45
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.67	0.67	49	57557	63	2	22	39	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	63	53218	29	2	18	9	30
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	72	48747	11	2	7	2	21
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	64	60997	15	0	14	1	45
ASE_00179	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	62	44182	12	1	8	3	22
ASE_00180	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	77	51272	16	2	9	5	23
ASE_00182	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	89	84150	17	1	15	1	47
ASE_00184	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	80	54520	24	1	14	9	22
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	92	73426	23	1	17	5	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	98	78886	26	3	16	7	34
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	16	1	12	3	43
ASE_00212	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	113	93832	22	2	14	6	35
ASE_00214	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	74	56187	24	2	17	5	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.78	54	48447	23	0	15	8	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	61	40394	17	2	13	2	29
ASE_00221	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	79	64527	19	1	13	5	38
ASE_00228	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	65	46894	17	3	9	5	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.78	64	42404	20	5	13	2	23
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	74	64166	24	4	17	3	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	55	43884	22	1	16	5	32
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.77	74	62385	26	0	22	4	40
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.79	85	74583	25	2	21	2	45
ASE_00257	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	71	50955	19	1	13	5	26
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	60	45078	22	0	12	10	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	72279	28	2	21	5	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	74	53214	17	2	11	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	62	51923	24	1	17	6	36
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	63	44482	14	0	6	8	25
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	75	61686	19	3	12	4	32
ASE_00285	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	84	68906	23	2	14	7	38
ASE_00292	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	23	3	15	5	37
ASE_00294	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	127	114342	18	1	11	6	44
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.71	61	52889	27	2	23	2	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.63	55	67441	34	1	31	2	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.70	0.83	83	80100	24	5	12	7	35
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.63	0.86	71	72688	24	1	11	12	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.85	101	81691	25	2	16	7	37
ASE_00335	RNaseP_bact_b links to Rfam database...	0.78	0.72	0.83	84	75365	26	5	12	9	32
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	45976	24	4	13	7	22
ASE_00353	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	74	57876	25	1	19	5	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.73	68	75373	26	0	25	1	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	66	48120	21	1	18	2	25
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.88	71	51279	14	0	10	4	23
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	74	54195	21	0	16	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	61	58566	28	3	23	2	37
ASE_00367	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.79	59	42996	26	0	16	10	27
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51916	25	3	20	2	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.76	71	56859	26	1	22	3	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	69	41829	11	0	7	4	15
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	72	48433	20	0	11	9	20
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	73	50314	21	0	16	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	71	55854	22	1	19	2	33
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	62	45681	20	0	10	10	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	65	42121	18	0	9	9	20
ASE_00393	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	55	47821	26	1	18	7	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.95	77	46890	7	0	4	3	16
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	64	41536	26	1	15	10	20
ASE_00396	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	67	41540	15	1	8	6	16
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	78	54526	16	1	10	5	27
ASE_00398	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	73	55862	18	0	10	8	31
ASE_00400	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57881	26	1	19	6	37
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	67	42410	12	0	9	3	18
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.84	61	42998	22	0	12	10	24
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	70	48747	21	0	11	10	24
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	47	49378	33	10	20	3	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.73	66	58220	28	3	22	3	39
ASE_00416	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	97	77303	29	3	18	8	30
ASE_00419	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	81	54857	11	2	6	3	22
ASE_00422	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	73	46883	21	3	12	6	21
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	77	56858	23	3	15	5	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	92	76522	28	3	19	6	33
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.77	72	46877	23	5	17	1	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.62	67	79293	43	1	40	2	68
ASE_00448	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	76	64166	27	2	17	8	36
ASE_00451	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	88	70769	24	1	18	5	37
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
RFA_00599	Telomerase-vert links to Rfam database...	0.74	0.74	0.74	82	101364	50	9	20	21	29
RFA_00601	Telomerase-vert links to Rfam database...	0.76	0.75	0.77	85	99124	46	3	23	20	29
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.84	0.85	98	101360	32	5	12	15	18
TMR_00017	tmRNA links to Rfam database...	0.60	0.55	0.67	56	67077	32	7	21	4	46
TMR_00018	tmRNA links to Rfam database...	0.49	0.49	0.49	45	64529	50	12	34	4	47
TMR_00038	tmRNA links to Rfam database...	0.72	0.67	0.76	74	71156	29	6	17	6	36
TMR_00042	tmRNA links to Rfam database...	0.74	0.69	0.78	68	62748	25	2	17	6	30
TMR_00046	tmRNA links to Rfam database...	0.64	0.60	0.67	58	62749	34	4	24	6	38
TMR_00048	tmRNA links to Rfam database...	0.68	0.66	0.71	63	64891	35	6	20	9	32
TMR_00080	tmRNA links to Rfam database...	0.64	0.53	0.76	51	70433	16	6	10	0	45
TMR_00082	tmRNA links to Rfam database...	0.63	0.54	0.73	52	67825	20	6	13	1	44
TMR_00123	tmRNA links to Rfam database...	0.66	0.60	0.72	61	66345	29	3	21	5	40
TMR_00137	tmRNA links to Rfam database...	0.52	0.47	0.57	42	61001	37	9	23	5	47
TMR_00142	tmRNA links to Rfam database...	0.66	0.65	0.67	66	70778	40	8	24	8	36
TMR_00207	tmRNA links to Rfam database...	0.50	0.47	0.53	48	72300	47	8	34	5	55
TMR_00257	tmRNA links to Rfam database...	0.68	0.59	0.78	58	67087	22	1	15	6	40
TMR_00271	tmRNA links to Rfam database...	0.65	0.62	0.69	56	64180	34	6	19	9	35
TMR_00332	tmRNA links to Rfam database...	0.58	0.55	0.63	54	67075	37	5	27	5	45
TMR_00366	tmRNA links to Rfam database...	0.79	0.76	0.83	76	67804	27	3	13	11	24
TMR_00378	tmRNA links to Rfam database...	0.77	0.75	0.79	73	67804	32	4	15	13	24
TMR_00399	tmRNA links to Rfam database...	0.44	0.41	0.46	39	64896	52	12	33	7	55
TMR_00404	tmRNA links to Rfam database...	0.67	0.66	0.68	61	67438	45	7	22	16	31
TMR_00427	tmRNA links to Rfam database...	0.67	0.60	0.74	58	67450	25	8	12	5	39
TMR_00443	tmRNA links to Rfam database...	0.61	0.57	0.66	59	67071	35	5	26	4	45
TMR_00451	tmRNA links to Rfam database...	0.49	0.46	0.53	41	63469	40	11	25	4	48
TMR_00458	tmRNA links to Rfam database...	0.56	0.49	0.63	46	63473	30	8	19	3	47
TMR_00469	tmRNA links to Rfam database...	0.78	0.74	0.83	74	64531	24	5	10	9	26
TMR_00472	tmRNA links to Rfam database...	0.79	0.73	0.85	71	64536	24	7	6	11	26
TMR_00519	tmRNA links to Rfam database...	0.52	0.48	0.56	46	63108	47	11	25	11	49
TMR_00520	tmRNA links to Rfam database...	0.51	0.48	0.54	48	63101	51	14	27	10	51
TMR_00522	tmRNA links to Rfam database...	0.55	0.52	0.60	50	63106	43	11	23	9	47
TMR_00528	tmRNA links to Rfam database...	0.54	0.52	0.57	50	63102	48	12	26	10	47
TMR_00540	tmRNA links to Rfam database...	0.49	0.44	0.53	46	73450	47	9	31	7	58
TMR_00568	tmRNA links to Rfam database...	0.77	0.69	0.86	68	60647	21	1	10	10	31
TMR_00571	tmRNA links to Rfam database...	0.78	0.73	0.84	72	60640	27	2	12	13	27
TMR_00580	tmRNA links to Rfam database...	0.78	0.73	0.84	73	60639	26	3	11	12	27
TMR_00584	tmRNA links to Rfam database...	0.78	0.71	0.86	69	60995	21	3	8	10	28
TMR_00586	tmRNA links to Rfam database...	0.74	0.70	0.78	68	60988	28	6	13	9	29
TMR_00616	tmRNA links to Rfam database...	0.77	0.72	0.83	71	67075	21	4	11	6	28
TMR_00699	tmRNA links to Rfam database...	0.66	0.58	0.76	59	67083	24	1	18	5	43
TMR_00702	tmRNA links to Rfam database...	0.60	0.51	0.71	51	67089	26	5	16	5	49
TMR_00703	tmRNA links to Rfam database...	0.81	0.73	0.90	72	67448	13	1	7	5	27

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Performance of Murlet(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	6354
Total TN	9009349
Total FP	2664
Total FP CONTRA	335
Total FP INCONS	2048
Total FP COMP	281
Total FN	8909

Total Scores
MCC	0.550
Average MCC ± 95% Confidence Intervals	0.555 ± 0.021
Sensitivity	0.416
Positive Predictive Value	0.727
Nr of predictions	150

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.34	0.76	55	108739	19	1	16	2	107
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00294	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.83	63	114405	14	4	9	1	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
PDB_00571	tRNA links to Rfam database...	0.59	0.52	0.68	13	3302	7	0	6	1	12
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.82	0.67	1.00	16	2262	0	0	0	0	8
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01073	SAM links to Rfam database...	0.66	0.44	1.00	15	4356	1	0	0	1	19
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.34	0.58	38	101409	33	1	27	5	73
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00602	Telomerase-vert links to Rfam database...	0.24	0.16	0.35	19	101421	41	2	33	6	97
TMR_00017	tmRNA links to Rfam database...	0.72	0.60	0.87	61	67091	13	0	9	4	41
TMR_00018	tmRNA links to Rfam database...	0.56	0.49	0.65	45	64551	29	6	18	5	47
TMR_00038	tmRNA links to Rfam database...	0.67	0.53	0.84	58	71184	13	5	6	2	52
TMR_00042	tmRNA links to Rfam database...	0.56	0.44	0.70	43	62774	19	1	17	1	55
TMR_00046	tmRNA links to Rfam database...	0.60	0.52	0.69	50	62763	23	6	16	1	46
TMR_00048	tmRNA links to Rfam database...	0.56	0.48	0.66	46	64910	29	9	15	5	49
TMR_00080	tmRNA links to Rfam database...	0.54	0.49	0.60	47	70422	35	12	19	4	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.71	48	67828	25	7	13	5	48
TMR_00123	tmRNA links to Rfam database...	0.64	0.50	0.81	51	66367	17	3	9	5	50
TMR_00137	tmRNA links to Rfam database...	0.54	0.46	0.64	41	61011	28	5	18	5	48
TMR_00142	tmRNA links to Rfam database...	0.64	0.60	0.69	61	70788	34	12	15	7	41
TMR_00207	tmRNA links to Rfam database...	0.53	0.42	0.66	43	72325	26	4	18	4	60
TMR_00257	tmRNA links to Rfam database...	0.56	0.48	0.64	47	67088	29	4	22	3	51
TMR_00271	tmRNA links to Rfam database...	0.55	0.42	0.72	38	64208	20	1	14	5	53
TMR_00332	tmRNA links to Rfam database...	0.70	0.58	0.85	57	67094	16	0	10	6	42
TMR_00366	tmRNA links to Rfam database...	0.53	0.49	0.58	49	67811	43	8	28	7	51
TMR_00378	tmRNA links to Rfam database...	0.57	0.51	0.64	49	67820	37	9	18	10	48
TMR_00399	tmRNA links to Rfam database...	0.61	0.47	0.79	44	64924	18	2	10	6	50
TMR_00404	tmRNA links to Rfam database...	0.53	0.41	0.68	38	67472	21	8	10	3	54
TMR_00427	tmRNA links to Rfam database...	0.20	0.13	0.30	13	67485	30	4	26	0	84
TMR_00443	tmRNA links to Rfam database...	0.73	0.61	0.88	63	67089	13	0	9	4	41
TMR_00451	tmRNA links to Rfam database...	0.52	0.46	0.58	41	63475	36	8	22	6	48
TMR_00458	tmRNA links to Rfam database...	0.50	0.41	0.61	38	63484	29	4	20	5	55
TMR_00469	tmRNA links to Rfam database...	0.64	0.48	0.84	48	64563	10	3	6	1	52
TMR_00472	tmRNA links to Rfam database...	0.70	0.61	0.81	59	64547	15	8	6	1	38
TMR_00519	tmRNA links to Rfam database...	0.49	0.37	0.65	35	63136	23	2	17	4	60
TMR_00520	tmRNA links to Rfam database...	0.44	0.35	0.54	35	63125	36	5	25	6	64
TMR_00522	tmRNA links to Rfam database...	0.49	0.39	0.60	38	63127	29	8	17	4	59
TMR_00528	tmRNA links to Rfam database...	0.48	0.41	0.57	40	63120	36	7	23	6	57
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.63	47	73461	28	8	20	0	57
TMR_00568	tmRNA links to Rfam database...	0.72	0.64	0.82	63	60649	18	3	11	4	36
TMR_00571	tmRNA links to Rfam database...	0.76	0.67	0.86	66	60649	15	2	9	4	33
TMR_00580	tmRNA links to Rfam database...	0.75	0.66	0.86	66	60649	15	2	9	4	34
TMR_00584	tmRNA links to Rfam database...	0.71	0.62	0.81	60	61001	17	4	10	3	37
TMR_00586	tmRNA links to Rfam database...	0.71	0.63	0.79	61	60998	20	5	11	4	36
TMR_00616	tmRNA links to Rfam database...	0.67	0.58	0.79	57	67089	16	6	9	1	42
TMR_00699	tmRNA links to Rfam database...	0.57	0.43	0.75	44	67102	19	1	14	4	58
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	25	3	17	5	57
TMR_00703	tmRNA links to Rfam database...	0.58	0.45	0.75	45	67468	19	3	12	4	54

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of TurboFold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for TurboFold(20)

2. Individual counts for TurboFold(20) [ download as .csv ]

Performance of Murlet(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]