CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	UNAFold		McQFold
MCC	0.472	>	0.450
Average MCC ± 95% Confidence Intervals	0.475 ± 0.014	>	0.470 ± 0.015
Sensitivity	0.470	>	0.440
Positive Predictive Value	0.476	>	0.461
Total TP	30637	>	28704
Total TN	45990778	<	45992856
Total FP	39405	>	38288
Total FP CONTRA	6016	>	5728
Total FP INCONS	27678	<	27821
Total FP COMP	5711	>	4739
Total FN	34581	<	36514
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of UNAFold and McQFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for UNAFold and McQFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for UNAFold and McQFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for UNAFold and McQFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for UNAFold and McQFold).

^top

Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	30637
Total TN	45990778
Total FP	39405
Total FP CONTRA	6016
Total FP INCONS	27678
Total FP COMP	5711
Total FN	34581

Total Scores
MCC	0.472
Average MCC ± 95% Confidence Intervals	0.475 ± 0.014
Sensitivity	0.470
Positive Predictive Value	0.476
Nr of predictions	669

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.66	46	34121	30	2	22	6	29
ASE_00002	RNaseP_arch links to Rfam database...	0.66	0.62	0.70	45	35447	24	3	16	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.81	50	26044	15	0	12	3	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50966	75	6	50	19	46
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	98	80484	21	4	15	2	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	86	104057	60	7	46	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.48	56	82911	67	6	55	6	68
ASE_00023	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	81	84129	48	5	40	3	46
ASE_00025	RNaseP_nuc links to Rfam database...	0.22	0.24	0.21	17	78526	115	12	51	52	54
ASE_00026	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	56	59582	55	1	46	8	54
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.57	69	84545	60	8	44	8	57
ASE_00029	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	44	82913	73	12	59	2	78
ASE_00030	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	84	85357	50	5	45	0	61
ASE_00031	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	73	86617	56	4	42	10	53
ASE_00032	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.58	63	80092	50	3	42	5	55
ASE_00033	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	63	64883	37	2	32	3	58
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	54	75734	70	8	59	3	78
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	83	89971	49	2	44	3	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.64	53	50320	30	5	25	0	50
ASE_00047	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	41	74189	76	4	71	1	89
ASE_00052	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	53	61329	48	2	41	5	59
ASE_00053	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	72	79275	57	5	49	3	61
ASE_00056	-	0.38	0.36	0.41	26	30812	48	4	34	10	46
ASE_00057	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.65	81	82090	49	8	36	5	53
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00066	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	83	72277	31	4	26	1	47
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00069	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	90	82896	45	5	37	3	50
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	47	3	40	4	72
ASE_00076	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	68161	46	4	39	3	57
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00079	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	52	55519	40	4	36	0	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	78	88288	49	5	39	5	66
ASE_00089	-	0.65	0.58	0.72	46	31311	21	0	18	3	33
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00096	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	62	63441	43	4	39	0	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00100	RNaseP_nuc links to Rfam database...	0.21	0.22	0.19	17	82126	113	16	56	41	59
ASE_00102	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	68	117703	87	8	76	3	98
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00108	RNaseP_nuc links to Rfam database...	0.24	0.29	0.20	18	46883	81	21	49	11	45
ASE_00111	RNaseP_nuc links to Rfam database...	0.25	0.32	0.20	18	49997	80	31	40	9	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	86	75362	24	5	13	6	30
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00116	RNaseP_arch links to Rfam database...	0.20	0.20	0.20	13	31561	55	2	50	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00120	RNaseP_arch links to Rfam database...	0.51	0.49	0.53	46	46885	42	8	32	2	48
ASE_00121	RNaseP_arch links to Rfam database...	0.24	0.24	0.24	22	45060	68	5	63	0	70
ASE_00122	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	40	43282	43	2	41	0	48
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	60	50315	30	4	24	2	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00139	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	34	54196	58	4	51	3	70
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00145	RNaseP_arch links to Rfam database...	0.46	0.45	0.48	50	70021	59	7	47	5	61
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00148	RNaseP_arch links to Rfam database...	0.69	0.67	0.72	103	112431	44	4	37	3	51
ASE_00151	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	27	51915	61	7	54	0	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00154	RNaseP_arch links to Rfam database...	0.64	0.63	0.65	67	65238	39	4	32	3	40
ASE_00155	RNaseP_arch links to Rfam database...	0.62	0.61	0.63	86	93392	57	8	42	7	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	84	28	43	13	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	52	57194	49	7	38	4	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00176	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	64	59931	39	6	30	3	46
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	69	84130	59	6	50	3	67
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00187	RNaseP_arch links to Rfam database...	0.47	0.44	0.49	51	68531	58	6	47	5	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.52	0.49	0.54	50	63098	47	8	34	5	52
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00192	RNaseP_bact_b links to Rfam database...	0.41	0.40	0.42	53	84541	78	9	63	6	80
ASE_00194	RNaseP_bact_b links to Rfam database...	0.54	0.53	0.56	63	73423	54	11	39	4	56
ASE_00195	-	0.60	0.58	0.62	77	86195	53	2	46	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.73	0.72	0.75	54	31554	21	2	16	3	21
ASE_00197	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	73	89127	58	2	51	5	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.65	0.61	0.69	68	67798	35	7	23	5	44
ASE_00205	RNaseP_arch links to Rfam database...	0.43	0.43	0.43	39	45966	54	7	44	3	51
ASE_00209	RNaseP_arch links to Rfam database...	0.39	0.38	0.42	33	42992	46	5	41	0	55
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	28	6	21	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	72	93827	66	5	57	4	76
ASE_00213	RNaseP_arch links to Rfam database...	0.74	0.73	0.76	48	27198	16	3	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00222	RNaseP_arch links to Rfam database...	0.59	0.59	0.61	92	111949	61	10	50	1	65
ASE_00227	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	38	78885	80	5	75	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45667	96	29	57	10	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	55	46578	40	2	30	8	38
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00246	RNaseP_nuc links to Rfam database...	0.16	0.18	0.15	12	48123	79	19	51	9	55
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	54207	97	18	48	31	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00250	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	60	78884	62	5	54	3	71
ASE_00252	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	91	115284	69	5	60	4	77
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.52	55	73048	53	4	46	3	66
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.89	0.83	0.97	83	49055	16	0	3	13	17
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00288	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	40	45970	47	3	43	1	53
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	97	100887	44	3	38	3	60
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	82	81693	38	3	32	3	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	77	73805	41	6	32	3	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	40	91676	90	9	81	0	105
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00299	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	49362	52	5	40	7	52
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.72	63	62394	46	6	18	22	26
ASE_00316	RNaseP_nuc links to Rfam database...	0.59	0.57	0.61	56	107788	84	7	29	48	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.65	0.64	0.67	75	80088	41	13	24	4	43
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.76	0.85	68	57211	32	4	8	20	21
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00330	RNaseP_nuc links to Rfam database...	0.70	0.70	0.71	63	56191	46	4	22	20	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	71	81683	57	2	54	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00337	RNaseP_nuc links to Rfam database...	0.58	0.58	0.59	41	39270	43	5	24	14	30
ASE_00338	RNaseP_nuc links to Rfam database...	0.60	0.54	0.66	53	66350	49	5	22	22	45
ASE_00339	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	62	80084	67	5	49	13	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00343	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.63	71	83323	55	8	34	13	42
ASE_00346	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	28	48115	64	7	55	2	69
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	46	3	38	5	41
ASE_00360	RNaseP_arch links to Rfam database...	0.22	0.23	0.22	15	29335	57	10	43	4	50
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	75	60280	28	1	22	5	35
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00380	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	44	54857	50	1	44	5	55
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	42	41832	35	4	27	4	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00408	-	0.49	0.48	0.50	34	32317	39	2	32	5	37
ASE_00409	-	0.50	0.49	0.51	41	40960	40	2	38	0	42
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00414	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	33	46278	56	2	47	7	62
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54509	72	10	59	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.21	0.21	0.20	16	38702	65	12	51	2	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00426	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	43	60969	63	9	54	0	65
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00429	-	0.39	0.38	0.41	25	28142	44	1	35	8	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	47	46274	44	4	35	5	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.66	65	68167	46	8	25	13	45
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	51	65967	48	2	46	0	65
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	55	60273	53	1	49	3	61
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
CRW_00004	-	0.51	0.52	0.50	68	154154	101	8	60	33	63
CRW_00005	-	0.56	0.55	0.56	73	137945	80	10	47	23	59
CRW_00007	-	0.50	0.53	0.48	70	144845	81	26	50	5	63
CRW_00009	-	0.57	0.58	0.56	80	137933	86	9	53	24	58
CRW_00010	-	0.80	0.78	0.82	98	102711	38	6	16	16	28
CRW_00011	-	0.65	0.66	0.65	91	118200	61	8	42	11	47
CRW_00012	-	0.24	0.26	0.23	36	146997	127	27	93	7	105
CRW_00013	Intron_gpI links to Rfam database...	0.24	0.24	0.24	28	103624	107	18	70	19	87
CRW_00014	-	0.36	0.37	0.36	45	103615	91	13	67	11	78
CRW_00016	Intron_gpI links to Rfam database...	0.62	0.57	0.67	68	77320	45	5	28	12	52
CRW_00017	-	0.40	0.44	0.37	40	92126	88	18	51	19	51
CRW_00018	-	0.59	0.65	0.53	79	182562	107	37	32	38	42
CRW_00019	-	0.61	0.60	0.62	82	127633	70	10	40	20	55
CRW_00423	-	0.20	0.21	0.20	40	242353	171	28	135	8	149
CRW_00429	-	0.12	0.12	0.12	29	306700	211	29	178	4	204
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00605	-	0.69	0.70	0.69	49	183850	123	6	16	101	21
CRW_00608	-	0.86	0.84	0.89	66	35704	18	0	8	10	13
CRW_00610	Intron_gpI links to Rfam database...	0.45	0.44	0.46	36	36236	43	6	37	0	45
CRW_00611	-	0.61	0.60	0.63	45	31303	34	1	26	7	30
CRW_00612	-	0.59	0.60	0.58	56	270383	169	1	40	128	37
CRW_00613	Intron_gpI links to Rfam database...	0.63	0.58	0.68	45	34914	29	1	20	8	33
CRW_00614	Intron_gpI links to Rfam database...	0.09	0.11	0.08	6	121694	140	20	51	69	51
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.20	0.17	12	56210	83	10	48	25	49
CRW_00619	Intron_gpI links to Rfam database...	0.37	0.42	0.33	31	164931	138	28	35	75	42
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.12	13	150870	160	31	61	68	50
CRW_00621	Intron_gpI links to Rfam database...	0.25	0.25	0.26	18	153111	144	9	43	92	53
CRW_00623	Intron_gpI links to Rfam database...	0.31	0.29	0.32	24	129721	119	11	39	69	59
CRW_00626	-	0.57	0.58	0.57	60	100920	70	9	36	25	44
CRW_00629	-	0.52	0.52	0.52	64	91256	60	18	40	2	58
CRW_00632	-	0.56	0.55	0.56	71	82901	62	9	47	6	57
CRW_00633	Intron_gpI links to Rfam database...	0.69	0.67	0.71	71	63446	33	8	21	4	35
CRW_00634	Intron_gpI links to Rfam database...	0.33	0.34	0.33	32	64522	70	14	52	4	62
CRW_00635	-	0.45	0.45	0.45	61	109142	85	10	65	10	76
CRW_00636	-	0.52	0.51	0.53	73	114821	71	10	56	5	70
CRW_00637	-	0.47	0.47	0.47	74	133745	90	17	67	6	84
CRW_00639	-	0.74	0.75	0.73	104	126614	53	14	24	15	34
CRW_00641	-	0.44	0.46	0.43	35	39821	56	9	38	9	41
CRW_00642	-	0.41	0.45	0.38	29	47201	56	12	36	8	36
CRW_00643	-	0.45	0.48	0.42	59	123115	93	27	55	11	63
CRW_00645	-	0.77	0.81	0.74	54	35438	28	8	11	9	13
CRW_00646	-	0.51	0.53	0.50	34	34912	39	6	28	5	30
CRW_00648	-	0.60	0.63	0.57	93	137911	74	17	54	3	55
CRW_00649	-	0.60	0.61	0.59	76	204352	121	2	50	69	48
CRW_00650	-	0.52	0.51	0.52	73	112910	71	9	58	4	69
CRW_00651	-	0.43	0.45	0.42	54	99999	79	8	67	4	67
CRW_00652	-	0.57	0.57	0.58	74	132227	81	7	47	27	56
CRW_00653	-	0.66	0.65	0.67	87	94700	47	6	37	4	47
CRW_00654	-	0.70	0.67	0.73	83	78096	36	4	27	5	41
CRW_00655	-	0.87	0.85	0.89	106	89134	18	7	6	5	18
CRW_00656	-	0.46	0.44	0.48	57	90406	67	9	53	5	72
CRW_00657	-	0.75	0.74	0.77	101	105898	35	2	29	4	35
CRW_00658	-	0.48	0.48	0.47	49	74587	58	22	33	3	53
CRW_00659	-	0.37	0.41	0.34	25	32312	52	16	32	4	36
CRW_00660	-	0.54	0.55	0.54	33	22094	31	7	21	3	27
CRW_00661	-	0.20	0.22	0.18	11	24249	52	16	34	2	40
CRW_00662	-	0.36	0.37	0.36	24	28613	50	7	36	7	41
CRW_00663	-	0.00	0.00	0.00	0	26039	67	11	56	0	61
CRW_00664	-	0.17	0.18	0.16	14	53538	79	16	60	3	64
CRW_00665	-	0.17	0.19	0.16	9	23596	51	10	38	3	39
CRW_00666	-	0.51	0.52	0.50	65	96010	78	11	55	12	61
CRW_00668	-	0.36	0.38	0.33	57	163707	126	24	90	12	93
CRW_00669	-	0.39	0.40	0.39	48	97337	78	18	58	2	71
CRW_00670	Intron_gpI links to Rfam database...	0.79	0.74	0.83	89	70018	21	6	12	3	31
CRW_00671	Intron_gpI links to Rfam database...	0.65	0.62	0.68	72	62729	39	7	27	5	45
CRW_00672	Intron_gpI links to Rfam database...	0.48	0.49	0.47	54	72275	65	19	42	4	57
CRW_00673	-	0.79	0.83	0.76	87	100014	47	22	5	20	18
CRW_00674	Intron_gpI links to Rfam database...	0.58	0.56	0.62	69	83324	45	7	36	2	55
CRW_00676	Intron_gpI links to Rfam database...	0.54	0.55	0.53	63	93410	69	15	40	14	52
CRW_00677	-	0.53	0.53	0.52	56	71902	59	13	39	7	49
CRW_00679	-	0.22	0.22	0.22	24	76525	93	14	73	6	83
CRW_00681	-	0.46	0.50	0.43	56	112920	87	19	55	13	56
CRW_00685	-	0.39	0.42	0.36	45	156956	113	21	58	34	61
CRW_00686	-	0.49	0.50	0.49	62	95139	73	8	57	8	63
CRW_00687	-	0.66	0.70	0.62	46	28606	32	8	20	4	20
CRW_00688	-	0.75	0.77	0.73	44	21885	17	7	9	1	13
CRW_00689	-	0.65	0.68	0.63	52	33588	32	11	19	2	25
CRW_00690	-	0.62	0.59	0.64	41	33347	30	7	16	7	28
CRW_00691	-	0.58	0.60	0.56	40	27190	33	6	25	2	27
CRW_00692	Intron_gpI links to Rfam database...	0.20	0.21	0.19	19	68537	84	24	55	5	71
CRW_00693	-	0.58	0.57	0.58	70	89133	59	7	43	9	52
CRW_00694	-	0.63	0.63	0.63	77	85782	52	6	40	6	45
CRW_00699	-	0.62	0.61	0.62	77	91682	48	6	41	1	49
CRW_00700	-	0.63	0.63	0.63	93	180753	87	11	44	32	54
CRW_00702	-	0.57	0.64	0.51	48	357341	200	16	30	154	27
CRW_00703	-	0.53	0.58	0.49	38	40393	46	15	24	7	28
CRW_00704	-	0.80	0.79	0.82	74	386670	190	4	12	174	20
CRW_00714	-	0.20	0.22	0.18	24	186224	160	28	79	53	83
CRW_00715	-	0.76	0.73	0.78	76	69281	24	3	18	3	28
CRW_00716	-	0.34	0.34	0.34	30	193664	145	10	49	86	59
CRW_00717	-	0.66	0.66	0.66	98	153587	65	8	42	15	50
CRW_00718	-	0.78	0.74	0.82	142	189862	49	3	29	17	49
CRW_00719	-	0.56	0.57	0.55	52	230087	143	9	33	101	39
CRW_00720	-	0.14	0.15	0.13	14	208228	168	21	72	75	77
CRW_00721	-	0.52	0.59	0.47	40	58567	61	17	29	15	28
CRW_00764	-	0.08	0.08	0.08	15	252920	182	41	140	1	181
CRW_00775	-	0.12	0.12	0.11	26	314584	213	61	150	2	186
CRW_00780	-	0.36	0.35	0.37	89	475561	163	24	126	13	166
CRW_00794	-	0.23	0.23	0.23	56	434530	209	20	172	17	190
CRW_00796	-	0.25	0.23	0.26	55	384793	177	24	131	22	180
CRW_00815	-	0.56	0.56	0.56	88	159739	78	15	53	10	70
CRW_00816	-	0.36	0.38	0.35	49	143775	111	18	74	19	80
CRW_00820	-	0.56	0.57	0.55	83	136352	79	16	52	11	62
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00072	-	0.38	0.39	0.38	81	148025	134	10	124	0	129
PDB_00078	-	0.44	0.42	0.48	48	49669	53	6	47	0	67
PDB_00079	-	0.64	0.60	0.68	85	121646	69	9	31	29	57
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	0.59	0.50	0.71	5	489	2	0	2	0	5
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00209	-	0.56	0.45	0.71	5	554	2	0	2	0	6
PDB_00243	-	0.63	0.58	0.70	7	620	3	0	3	0	5
PDB_00278	-	0.19	0.19	0.19	14	24904	58	7	51	0	58
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00370	-	0.09	0.12	0.07	3	15179	45	12	31	2	22
PDB_00403	-	0.52	0.53	0.51	81	124592	85	16	61	8	72
PDB_00423	-	0.17	0.16	0.18	12	26731	53	2	51	0	62
PDB_00447	-	0.44	0.39	0.52	17	7107	16	6	10	0	27
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00701	-	0.47	0.45	0.49	49	45351	52	5	46	1	60
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	24	5	19	0	23
PDB_00747	-	0.66	0.60	0.73	48	24465	18	0	18	0	32
PDB_00804	-	0.19	0.20	0.18	10	15344	46	10	36	0	40
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.52	0.66	42	26964	23	1	21	1	39
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00857	-	0.54	0.40	0.75	6	1073	2	0	2	0	9
PDB_00874	-	0.10	0.10	0.14	2	932	12	2	10	0	18
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00917	-	0.49	0.47	0.51	45	35157	49	4	39	6	50
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.55	48	44165	43	3	37	3	55
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01059	-	0.75	0.57	1.00	4	227	0	0	0	0	3
PDB_01070	-	0.31	0.30	0.33	16	12671	34	2	31	1	38
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01092	glmS links to Rfam database...	0.74	0.65	0.83	34	10112	8	1	6	1	18
PDB_01129	-	0.27	0.28	0.26	20	35434	62	15	42	5	51
PDB_01157	-	0.29	0.29	0.30	28	49993	65	9	56	0	70
PDB_01166	-	0.44	0.42	0.46	88	181914	110	21	83	6	124
PDB_01194	-	-0.02	0.00	0.00	0	488	8	0	8	0	15
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.71	0.63	0.80	12	1161	3	2	1	0	7
PDB_01250	-	0.10	0.10	0.12	4	12056	30	7	23	0	37
PDB_01260	-	0.53	0.44	0.65	11	1813	6	0	6	0	14
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01309	-	-0.01	0.00	0.00	0	9122	58	7	51	0	39
RFA_00597	Telomerase-vert links to Rfam database...	0.50	0.50	0.50	55	97792	79	9	47	23	54
RFA_00598	Telomerase-vert links to Rfam database...	0.68	0.64	0.71	65	84575	52	6	20	26	36
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.63	78	101352	64	17	28	19	33
RFA_00600	Telomerase-vert links to Rfam database...	0.62	0.69	0.56	69	120172	85	29	25	31	31
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	89	21	49	19	58
RFA_00602	Telomerase-vert links to Rfam database...	0.51	0.53	0.48	62	101347	86	18	48	20	54
RFA_00632	HDV_ribozyme links to Rfam database...	0.34	0.36	0.33	10	4065	20	2	18	0	18
RFA_00636	HDV_ribozyme links to Rfam database...	0.43	0.43	0.44	12	3978	15	2	13	0	16
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	7	1	6	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.61	0.56	0.67	10	2001	8	0	5	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	4	1	0	3	8
RFA_00779	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	15	2	13	0	16
RFA_00809	RydC links to Rfam database...	0.37	0.38	0.38	6	2129	10	1	9	0	10
TMR_00007	tmRNA links to Rfam database...	0.29	0.28	0.30	30	61677	74	11	58	5	78
TMR_00008	tmRNA links to Rfam database...	0.50	0.48	0.52	51	65967	59	10	38	11	55
TMR_00010	tmRNA links to Rfam database...	0.30	0.31	0.30	30	57869	71	14	57	0	66
TMR_00012	tmRNA links to Rfam database...	0.28	0.28	0.27	23	64536	76	20	41	15	58
TMR_00014	tmRNA links to Rfam database...	0.52	0.50	0.54	55	68533	54	12	35	7	55
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00028	tmRNA links to Rfam database...	0.39	0.41	0.37	40	62726	72	15	54	3	57
TMR_00030	tmRNA links to Rfam database...	0.20	0.21	0.20	23	75741	96	12	79	5	88
TMR_00034	tmRNA links to Rfam database...	0.63	0.60	0.66	66	59931	41	6	28	7	44
TMR_00035	tmRNA links to Rfam database...	0.33	0.35	0.32	34	67791	76	9	62	5	64
TMR_00036	tmRNA links to Rfam database...	0.57	0.57	0.57	58	90424	72	11	32	29	43
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00047	tmRNA links to Rfam database...	0.26	0.30	0.23	17	48442	73	16	41	16	40
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00049	tmRNA links to Rfam database...	0.53	0.54	0.52	47	63099	56	9	35	12	40
TMR_00051	tmRNA links to Rfam database...	0.65	0.61	0.70	57	65621	44	2	23	19	37
TMR_00055	tmRNA links to Rfam database...	0.12	0.13	0.12	15	78874	114	25	89	0	99
TMR_00057	tmRNA links to Rfam database...	0.07	0.09	0.06	7	73812	109	31	70	8	72
TMR_00061	tmRNA links to Rfam database...	0.24	0.25	0.24	25	59580	87	11	69	7	74
TMR_00062	tmRNA links to Rfam database...	0.56	0.57	0.55	59	78499	63	8	40	15	45
TMR_00064	tmRNA links to Rfam database...	0.27	0.27	0.27	28	76923	77	20	57	0	75
TMR_00065	tmRNA links to Rfam database...	0.44	0.44	0.43	47	76527	63	12	50	1	59
TMR_00067	tmRNA links to Rfam database...	0.35	0.36	0.34	41	82095	83	11	68	4	73
TMR_00073	tmRNA links to Rfam database...	0.43	0.43	0.43	50	65588	65	5	60	0	67
TMR_00076	tmRNA links to Rfam database...	0.32	0.33	0.32	33	70772	77	14	57	6	67
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00081	tmRNA links to Rfam database...	0.47	0.45	0.48	48	67062	52	12	39	1	58
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00083	tmRNA links to Rfam database...	0.43	0.43	0.44	45	68162	66	15	43	8	60
TMR_00092	tmRNA links to Rfam database...	0.55	0.57	0.53	58	67418	56	14	38	4	43
TMR_00093	tmRNA links to Rfam database...	0.42	0.43	0.41	44	64153	66	14	50	2	58
TMR_00096	tmRNA links to Rfam database...	0.12	0.12	0.12	12	64882	94	16	70	8	88
TMR_00101	tmRNA links to Rfam database...	0.33	0.33	0.33	35	64155	76	10	61	5	72
TMR_00102	tmRNA links to Rfam database...	0.26	0.28	0.25	28	64150	86	16	67	3	73
TMR_00103	tmRNA links to Rfam database...	0.57	0.56	0.57	61	64154	50	8	38	4	47
TMR_00104	-	0.09	0.10	0.08	7	66702	92	33	53	6	63
TMR_00106	tmRNA links to Rfam database...	0.50	0.52	0.48	62	89970	72	16	52	4	58
TMR_00109	tmRNA links to Rfam database...	0.31	0.30	0.32	36	88298	79	15	61	3	86
TMR_00111	tmRNA links to Rfam database...	0.45	0.45	0.45	55	90403	71	12	55	4	67
TMR_00116	tmRNA links to Rfam database...	0.57	0.56	0.58	58	64880	54	5	37	12	46
TMR_00117	tmRNA links to Rfam database...	0.58	0.57	0.59	67	80086	56	8	39	9	51
TMR_00118	tmRNA links to Rfam database...	0.40	0.40	0.41	48	81288	77	8	62	7	72
TMR_00119	tmRNA links to Rfam database...	0.49	0.49	0.49	51	71905	60	8	46	6	53
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00124	tmRNA links to Rfam database...	0.47	0.48	0.46	47	70397	70	15	41	14	51
TMR_00125	tmRNA links to Rfam database...	0.20	0.20	0.20	20	64159	86	17	65	4	79
TMR_00127	tmRNA links to Rfam database...	0.58	0.57	0.60	55	62743	43	9	28	6	42
TMR_00128	tmRNA links to Rfam database...	0.36	0.36	0.36	35	60979	61	11	50	0	61
TMR_00131	tmRNA links to Rfam database...	0.29	0.28	0.30	28	64886	73	12	54	7	71
TMR_00135	tmRNA links to Rfam database...	0.59	0.56	0.63	55	62747	43	4	29	10	44
TMR_00136	tmRNA links to Rfam database...	0.19	0.20	0.18	20	74581	93	21	69	3	81
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00139	tmRNA links to Rfam database...	0.57	0.62	0.54	56	62024	55	18	30	7	35
TMR_00140	tmRNA links to Rfam database...	0.49	0.49	0.50	49	73822	65	10	39	16	51
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00143	tmRNA links to Rfam database...	0.48	0.49	0.49	50	64517	63	9	44	10	53
TMR_00144	tmRNA links to Rfam database...	0.26	0.27	0.24	28	74189	90	15	73	2	75
TMR_00146	tmRNA links to Rfam database...	0.87	0.88	0.86	37	32088	34	2	4	28	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.70	30	43028	52	3	10	39	12
TMR_00152	tmRNA links to Rfam database...	0.26	0.26	0.26	30	81291	96	10	75	11	85
TMR_00155	tmRNA links to Rfam database...	0.39	0.37	0.41	38	61683	64	5	50	9	66
TMR_00156	tmRNA links to Rfam database...	0.36	0.36	0.36	35	60282	61	12	49	0	62
TMR_00158	tmRNA links to Rfam database...	0.37	0.35	0.39	35	60637	60	5	49	6	64
TMR_00159	tmRNA links to Rfam database...	0.36	0.36	0.36	33	62036	70	13	46	11	59
TMR_00160	tmRNA links to Rfam database...	0.45	0.44	0.45	42	64527	59	13	38	8	53
TMR_00164	tmRNA links to Rfam database...	0.29	0.28	0.30	30	66696	77	10	59	8	76
TMR_00165	tmRNA links to Rfam database...	0.30	0.32	0.29	31	61669	85	12	64	9	66
TMR_00166	tmRNA links to Rfam database...	0.30	0.29	0.32	29	61685	65	7	55	3	72
TMR_00168	tmRNA links to Rfam database...	0.68	0.66	0.71	75	60969	36	3	28	5	39
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.28	15	42142	64	16	22	26	27
TMR_00179	tmRNA links to Rfam database...	0.52	0.53	0.51	52	67060	60	10	39	11	46
TMR_00180	tmRNA links to Rfam database...	0.63	0.63	0.63	62	67063	49	8	28	13	37
TMR_00182	tmRNA links to Rfam database...	0.11	0.12	0.11	12	66322	100	13	83	4	90
TMR_00183	tmRNA links to Rfam database...	0.18	0.17	0.18	18	63090	87	6	76	5	85
TMR_00184	tmRNA links to Rfam database...	0.40	0.40	0.40	41	63087	64	4	58	2	61
TMR_00193	tmRNA links to Rfam database...	0.43	0.44	0.43	35	59258	56	12	35	9	45
TMR_00194	tmRNA links to Rfam database...	0.48	0.48	0.47	45	62740	61	10	40	11	48
TMR_00196	tmRNA links to Rfam database...	0.38	0.38	0.39	37	60979	64	8	51	5	60
TMR_00199	tmRNA links to Rfam database...	0.48	0.49	0.47	45	62739	58	21	30	7	47
TMR_00200	-	0.56	0.56	0.57	42	41542	42	3	29	10	33
TMR_00204	tmRNA links to Rfam database...	0.39	0.40	0.39	39	60277	68	16	46	6	58
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00223	tmRNA links to Rfam database...	0.10	0.11	0.10	10	64165	90	15	71	4	85
TMR_00224	tmRNA links to Rfam database...	0.36	0.37	0.36	37	64876	67	11	56	0	64
TMR_00226	tmRNA links to Rfam database...	0.30	0.32	0.29	34	69632	86	16	69	1	71
TMR_00227	tmRNA links to Rfam database...	0.21	0.22	0.20	22	70013	93	11	79	3	79
TMR_00228	tmRNA links to Rfam database...	0.29	0.31	0.27	34	88283	98	24	69	5	74
TMR_00234	tmRNA links to Rfam database...	0.30	0.31	0.29	32	58887	81	8	69	4	70
TMR_00238	tmRNA links to Rfam database...	0.20	0.22	0.19	22	84551	99	23	70	6	79
TMR_00239	tmRNA links to Rfam database...	0.63	0.65	0.62	62	61676	40	7	31	2	34
TMR_00240	tmRNA links to Rfam database...	0.20	0.21	0.20	18	63098	77	15	59	3	67
TMR_00246	-	0.43	0.50	0.38	17	78165	113	6	22	85	17
TMR_00248	tmRNA links to Rfam database...	0.13	0.16	0.10	6	54226	87	25	28	34	32
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00259	tmRNA links to Rfam database...	0.58	0.57	0.58	59	67795	45	13	29	3	44
TMR_00261	tmRNA links to Rfam database...	0.52	0.52	0.52	53	66694	53	14	34	5	48
TMR_00262	tmRNA links to Rfam database...	0.49	0.51	0.47	53	74192	60	19	41	0	51
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00274	tmRNA links to Rfam database...	0.30	0.30	0.29	32	66684	84	13	66	5	73
TMR_00278	tmRNA links to Rfam database...	0.43	0.44	0.42	45	67789	71	7	55	9	57
TMR_00279	tmRNA links to Rfam database...	0.52	0.52	0.52	49	68912	55	7	38	10	45
TMR_00280	tmRNA links to Rfam database...	0.34	0.35	0.34	35	65963	81	8	60	13	66
TMR_00283	tmRNA links to Rfam database...	0.41	0.44	0.39	42	65234	68	19	46	3	54
TMR_00289	tmRNA links to Rfam database...	0.59	0.59	0.59	58	67063	52	11	29	12	40
TMR_00290	tmRNA links to Rfam database...	0.21	0.22	0.21	20	64164	85	15	62	8	72
TMR_00296	tmRNA links to Rfam database...	0.29	0.30	0.29	29	68907	78	18	52	8	69
TMR_00298	tmRNA links to Rfam database...	0.47	0.50	0.45	50	68153	66	16	46	4	51
TMR_00300	tmRNA links to Rfam database...	0.53	0.54	0.53	60	70387	63	9	44	10	52
TMR_00301	tmRNA links to Rfam database...	0.35	0.35	0.34	34	82116	74	21	44	9	62
TMR_00302	tmRNA links to Rfam database...	0.34	0.37	0.32	35	77311	82	20	55	7	59
TMR_00305	tmRNA links to Rfam database...	0.69	0.66	0.74	67	60984	32	5	19	8	35
TMR_00306	tmRNA links to Rfam database...	0.11	0.11	0.12	12	64158	93	9	82	2	94
TMR_00310	tmRNA links to Rfam database...	0.60	0.58	0.63	57	63812	38	9	25	4	41
TMR_00317	tmRNA links to Rfam database...	0.60	0.62	0.58	63	68156	49	14	32	3	39
TMR_00331	tmRNA links to Rfam database...	0.50	0.54	0.46	44	66699	66	8	44	14	38
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00334	tmRNA links to Rfam database...	0.28	0.28	0.28	28	66696	79	10	61	8	73
TMR_00337	tmRNA links to Rfam database...	0.55	0.53	0.57	63	82918	51	14	33	4	56
TMR_00340	tmRNA links to Rfam database...	0.37	0.38	0.36	31	64176	74	5	49	20	50
TMR_00341	tmRNA links to Rfam database...	0.20	0.22	0.19	20	63084	89	23	63	3	72
TMR_00343	tmRNA links to Rfam database...	0.32	0.30	0.33	32	64884	72	12	52	8	73
TMR_00345	tmRNA links to Rfam database...	0.47	0.46	0.48	48	63803	60	9	43	8	56
TMR_00346	tmRNA links to Rfam database...	0.49	0.51	0.47	48	64158	57	15	40	2	46
TMR_00348	tmRNA links to Rfam database...	0.23	0.23	0.22	23	77317	98	13	68	17	76
TMR_00352	tmRNA links to Rfam database...	0.39	0.41	0.36	31	95181	92	18	36	38	44
TMR_00353	tmRNA links to Rfam database...	0.51	0.53	0.49	56	84140	68	21	38	9	49
TMR_00357	tmRNA links to Rfam database...	0.40	0.41	0.40	38	82932	75	20	38	17	54
TMR_00358	tmRNA links to Rfam database...	0.61	0.60	0.62	59	74983	54	17	19	18	40
TMR_00361	-	0.29	0.35	0.25	25	93427	94	26	50	18	47
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00372	tmRNA links to Rfam database...	0.58	0.59	0.58	57	70401	53	7	35	11	39
TMR_00374	tmRNA links to Rfam database...	0.37	0.40	0.34	37	81701	77	24	48	5	55
TMR_00375	tmRNA links to Rfam database...	0.47	0.48	0.46	47	73433	66	17	39	10	51
TMR_00376	tmRNA links to Rfam database...	0.46	0.46	0.45	44	74594	70	17	36	17	51
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00383	tmRNA links to Rfam database...	0.20	0.21	0.19	21	66686	96	20	68	8	79
TMR_00384	tmRNA links to Rfam database...	0.33	0.31	0.36	34	65608	68	2	59	7	74
TMR_00393	tmRNA links to Rfam database...	0.57	0.62	0.52	33	53238	56	13	17	26	20
TMR_00395	tmRNA links to Rfam database...	0.39	0.37	0.42	40	64524	60	6	50	4	69
TMR_00398	tmRNA links to Rfam database...	0.67	0.64	0.70	68	65244	35	2	27	6	38
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00408	tmRNA links to Rfam database...	0.63	0.65	0.61	57	65972	48	13	24	11	31
TMR_00409	tmRNA links to Rfam database...	0.69	0.74	0.64	34	68582	73	7	12	54	12
TMR_00411	tmRNA links to Rfam database...	0.51	0.52	0.50	45	60985	50	12	33	5	42
TMR_00415	tmRNA links to Rfam database...	0.35	0.35	0.35	35	67062	67	13	51	3	66
TMR_00419	tmRNA links to Rfam database...	0.33	0.32	0.35	35	81709	84	9	57	18	76
TMR_00422	tmRNA links to Rfam database...	0.52	0.52	0.52	48	67803	54	10	35	9	44
TMR_00423	tmRNA links to Rfam database...	0.08	0.10	0.07	7	63799	106	25	72	9	66
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00429	tmRNA links to Rfam database...	0.50	0.48	0.52	52	74591	57	7	41	9	57
TMR_00430	tmRNA links to Rfam database...	0.29	0.30	0.28	33	82502	86	20	66	0	76
TMR_00431	tmRNA links to Rfam database...	0.68	0.69	0.68	38	51947	63	8	10	45	17
TMR_00432	tmRNA links to Rfam database...	0.21	0.22	0.20	23	79687	96	17	73	6	81
TMR_00433	tmRNA links to Rfam database...	0.31	0.32	0.31	34	80089	82	10	67	5	72
TMR_00439	tmRNA links to Rfam database...	0.39	0.42	0.38	42	68523	80	21	49	10	59
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62028	95	24	63	8	70
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00448	tmRNA links to Rfam database...	0.31	0.33	0.30	30	62028	76	12	58	6	62
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00457	tmRNA links to Rfam database...	0.55	0.54	0.56	55	78507	51	10	34	7	47
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00460	tmRNA links to Rfam database...	0.43	0.44	0.43	47	79291	71	13	50	8	59
TMR_00465	tmRNA links to Rfam database...	0.24	0.26	0.23	24	64155	82	23	59	0	70
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00478	tmRNA links to Rfam database...	0.44	0.45	0.42	45	71904	67	15	46	6	54
TMR_00498	tmRNA links to Rfam database...	0.46	0.45	0.46	45	68909	63	10	42	11	54
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.18	21	64506	100	10	83	7	78
TMR_00501	tmRNA links to Rfam database...	0.37	0.37	0.37	34	62390	62	9	48	5	58
TMR_00502	tmRNA links to Rfam database...	0.22	0.24	0.21	22	75360	93	20	64	9	71
TMR_00503	tmRNA links to Rfam database...	0.34	0.33	0.35	37	67790	76	5	64	7	74
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00541	tmRNA links to Rfam database...	0.42	0.41	0.43	43	61676	65	3	54	8	62
TMR_00544	tmRNA links to Rfam database...	0.31	0.31	0.30	34	89563	85	23	56	6	74
TMR_00547	tmRNA links to Rfam database...	0.50	0.50	0.51	50	65243	50	4	44	2	50
TMR_00553	tmRNA links to Rfam database...	0.44	0.43	0.44	35	48126	50	4	40	6	46
TMR_00559	tmRNA links to Rfam database...	0.41	0.40	0.43	40	62388	57	9	44	4	61
TMR_00560	tmRNA links to Rfam database...	0.40	0.40	0.40	39	60978	67	6	52	9	59
TMR_00562	tmRNA links to Rfam database...	0.26	0.26	0.26	27	72667	85	13	64	8	75
TMR_00563	tmRNA links to Rfam database...	0.37	0.39	0.35	40	75352	81	19	55	7	63
TMR_00566	tmRNA links to Rfam database...	0.25	0.25	0.24	25	60623	82	12	66	4	75
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00570	tmRNA links to Rfam database...	0.37	0.37	0.38	36	60282	70	8	52	10	61
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00576	tmRNA links to Rfam database...	0.29	0.28	0.30	29	60282	72	16	51	5	73
TMR_00579	tmRNA links to Rfam database...	0.23	0.26	0.21	23	80489	98	19	70	9	67
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00581	tmRNA links to Rfam database...	0.14	0.14	0.13	14	62374	100	11	82	7	84
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00587	tmRNA links to Rfam database...	0.72	0.70	0.74	70	61330	30	4	21	5	30
TMR_00588	tmRNA links to Rfam database...	0.21	0.22	0.20	22	77312	96	20	67	9	79
TMR_00594	tmRNA links to Rfam database...	0.21	0.22	0.21	23	79291	91	20	67	4	81
TMR_00596	tmRNA links to Rfam database...	0.16	0.17	0.15	16	78106	98	15	73	10	79
TMR_00599	tmRNA links to Rfam database...	0.16	0.18	0.14	13	63097	90	28	52	10	59
TMR_00600	tmRNA links to Rfam database...	0.18	0.18	0.19	21	79687	94	18	74	2	94
TMR_00601	tmRNA links to Rfam database...	0.46	0.48	0.45	20	58952	81	2	22	57	22
TMR_00603	tmRNA links to Rfam database...	0.55	0.56	0.55	24	60334	76	7	13	56	19
TMR_00604	tmRNA links to Rfam database...	0.65	0.63	0.67	70	62731	38	3	31	4	42
TMR_00605	tmRNA links to Rfam database...	0.54	0.52	0.57	56	74207	49	11	31	7	52
TMR_00606	tmRNA links to Rfam database...	0.38	0.38	0.38	41	68897	73	7	61	5	66
TMR_00609	tmRNA links to Rfam database...	0.63	0.61	0.64	69	63439	40	8	30	2	44
TMR_00610	tmRNA links to Rfam database...	0.57	0.57	0.57	59	62024	57	7	38	12	45
TMR_00611	tmRNA links to Rfam database...	0.43	0.45	0.41	46	61314	65	16	49	0	56
TMR_00612	tmRNA links to Rfam database...	0.41	0.41	0.41	43	60620	69	7	56	6	61
TMR_00614	tmRNA links to Rfam database...	0.55	0.53	0.58	55	60980	49	3	37	9	49
TMR_00615	tmRNA links to Rfam database...	0.56	0.58	0.53	56	63798	52	19	30	3	40
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00617	tmRNA links to Rfam database...	0.38	0.41	0.35	24	34648	54	12	32	10	34
TMR_00623	tmRNA links to Rfam database...	0.39	0.37	0.42	40	61329	60	2	54	4	68
TMR_00624	tmRNA links to Rfam database...	0.48	0.47	0.49	51	62377	65	5	48	12	57
TMR_00625	tmRNA links to Rfam database...	0.22	0.23	0.21	24	78890	93	28	61	4	82
TMR_00626	tmRNA links to Rfam database...	0.37	0.39	0.36	42	67780	78	17	57	4	67
TMR_00680	tmRNA links to Rfam database...	0.20	0.21	0.20	21	67790	94	18	67	9	78
TMR_00681	tmRNA links to Rfam database...	0.56	0.55	0.58	53	65974	49	5	34	10	44
TMR_00683	tmRNA links to Rfam database...	0.33	0.35	0.32	35	82919	78	17	57	4	65
TMR_00686	tmRNA links to Rfam database...	0.45	0.45	0.45	49	71145	70	14	45	11	59
TMR_00687	tmRNA links to Rfam database...	0.37	0.35	0.38	39	71529	73	4	59	10	72
TMR_00696	tmRNA links to Rfam database...	0.33	0.33	0.33	38	84962	95	12	66	17	76
TMR_00698	tmRNA links to Rfam database...	0.56	0.55	0.58	57	63092	44	7	34	3	47
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63
TMR_00706	tmRNA links to Rfam database...	0.53	0.52	0.53	54	66328	52	6	42	4	49
TMR_00711	tmRNA links to Rfam database...	0.55	0.54	0.55	53	67800	50	13	30	7	45
TMR_00712	tmRNA links to Rfam database...	0.38	0.39	0.38	43	78492	73	22	49	2	66
TMR_00716	tmRNA links to Rfam database...	0.19	0.19	0.19	19	62737	79	15	64	0	81

^top

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	28704
Total TN	45992856
Total FP	38288
Total FP CONTRA	5728
Total FP INCONS	27821
Total FP COMP	4739
Total FN	36514

Total Scores
MCC	0.450
Average MCC ± 95% Confidence Intervals	0.470 ± 0.015
Sensitivity	0.440
Positive Predictive Value	0.461
Nr of predictions	669

^top

2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.78	0.73	0.82	55	34124	17	7	5	5	20
ASE_00002	RNaseP_arch links to Rfam database...	0.80	0.75	0.86	55	35447	12	4	5	3	18
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	47	47805	48	9	34	5	50
ASE_00005	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	54	57878	40	0	38	2	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	32	47498	60	6	50	4	61
ASE_00007	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	43	59591	55	2	49	4	67
ASE_00009	RNaseP_arch links to Rfam database...	0.67	0.64	0.70	43	26045	18	3	15	0	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	48	73816	61	3	53	5	75
ASE_00014	RNaseP_arch links to Rfam database...	0.47	0.47	0.48	50	54180	56	9	46	1	56
ASE_00017	RNaseP_nuc links to Rfam database...	0.18	0.20	0.17	13	50963	78	25	39	14	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	68	80482	52	2	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	59	73797	64	9	55	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	86	104068	47	2	40	5	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.60	0.56	0.65	70	82920	45	5	33	7	54
ASE_00023	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	72	84131	57	6	46	5	55
ASE_00025	RNaseP_nuc links to Rfam database...	0.36	0.37	0.35	26	78531	92	6	43	43	45
ASE_00026	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.38	34	59595	58	7	49	2	76
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.59	68	84550	50	11	37	2	58
ASE_00029	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	60	82924	48	3	41	4	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	81	85360	51	6	44	1	64
ASE_00031	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	63	86627	56	5	41	10	63
ASE_00032	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	69	80093	39	12	26	1	49
ASE_00033	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.42	41	64883	57	3	53	1	80
ASE_00035	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	32	70401	71	9	58	4	86
ASE_00036	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	60	75736	64	8	51	5	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	42	59248	50	5	45	0	68
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	39	53538	53	3	48	2	62
ASE_00040	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	34	78886	88	9	74	5	99
ASE_00041	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	46	57539	48	6	39	3	62
ASE_00042	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	77	89972	53	4	47	2	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	80	54515	25	4	16	5	25
ASE_00046	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	53	50319	32	3	28	1	50
ASE_00047	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	54	74198	54	3	50	1	76
ASE_00052	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	47	61323	59	9	46	4	65
ASE_00053	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	73	79274	62	9	45	8	60
ASE_00056	-	0.43	0.43	0.42	31	30803	47	5	37	5	41
ASE_00057	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	70	82095	57	13	37	7	64
ASE_00064	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	44	45364	46	5	38	3	45
ASE_00066	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.39	41	72286	64	3	60	1	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	51	37613	16	2	9	5	34
ASE_00069	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	70	82902	60	6	50	4	70
ASE_00074	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	67786	62	3	59	0	71
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	74	108681	62	4	52	6	88
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	56	68165	46	2	42	2	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	45075	47	5	36	6	52
ASE_00078	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	42997	38	2	29	7	40
ASE_00079	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	52	55523	39	5	31	3	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	37	71524	71	6	64	1	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	28	49688	56	5	49	2	69
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	42	70396	73	2	60	11	74
ASE_00083	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.26	27	62379	75	6	69	0	83
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	56	53540	36	2	30	4	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	61	88303	52	2	44	6	83
ASE_00089	-	0.21	0.20	0.22	16	31303	58	2	54	2	63
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	53	55510	52	6	42	4	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	50	63444	55	6	46	3	63
ASE_00096	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	58	63454	35	2	32	1	57
ASE_00099	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	67	64510	44	4	39	1	53
ASE_00100	RNaseP_nuc links to Rfam database...	0.32	0.33	0.31	25	82134	111	7	49	55	51
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	75	117705	78	5	70	3	91
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	62	64148	52	8	43	1	57
ASE_00105	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	64165	64	2	58	4	75
ASE_00107	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	67	73039	48	1	46	1	60
ASE_00108	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	24	46888	72	19	40	13	39
ASE_00111	RNaseP_nuc links to Rfam database...	0.34	0.42	0.27	24	49998	74	33	31	10	33
ASE_00112	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	81	75362	33	2	21	10	35
ASE_00115	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	58	54525	40	4	28	8	43
ASE_00116	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	33	31565	32	3	25	4	33
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	38	60632	60	3	53	4	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.86	87	62734	14	2	12	0	21
ASE_00120	RNaseP_arch links to Rfam database...	0.47	0.46	0.49	43	46883	45	4	41	0	51
ASE_00121	RNaseP_arch links to Rfam database...	0.47	0.46	0.48	42	45063	47	7	38	2	50
ASE_00122	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	59	43284	25	1	21	3	29
ASE_00123	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	38430	45	0	39	6	51
ASE_00125	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	39272	38	2	33	3	55
ASE_00126	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	42	40396	33	3	29	1	40
ASE_00128	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	39	53219	47	3	40	4	61
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	66	62729	42	3	37	2	45
ASE_00131	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	28	39274	43	3	35	5	57
ASE_00132	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	57	50323	24	4	19	1	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	30	50317	57	7	49	1	65
ASE_00135	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	31	63090	74	3	66	5	78
ASE_00136	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	59	48122	32	1	23	8	33
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	51	48423	45	5	37	3	47
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.63	41	40405	25	4	20	1	40
ASE_00139	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	54	54192	42	1	38	3	50
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	61	70769	47	7	39	1	64
ASE_00142	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	69	67048	47	5	39	3	53
ASE_00145	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	56	70022	50	2	45	3	55
ASE_00146	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	61	70770	48	1	44	3	63
ASE_00148	RNaseP_arch links to Rfam database...	0.64	0.62	0.66	96	112430	49	4	45	0	58
ASE_00151	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	48	51920	39	9	26	4	50
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.53	0.49	39	57550	72	9	32	31	34
ASE_00154	RNaseP_arch links to Rfam database...	0.62	0.61	0.64	65	65239	37	1	36	0	42
ASE_00155	RNaseP_arch links to Rfam database...	0.59	0.56	0.62	80	93398	54	3	47	4	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	37	53213	57	4	47	6	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	39	52882	56	6	48	2	62
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.28	24	60640	89	18	44	27	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	41	57205	47	2	43	2	66
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.74	64	48742	24	2	20	2	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	47	48431	38	3	35	0	47
ASE_00172	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	50	58903	50	5	38	7	56
ASE_00174	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	45	60978	53	5	47	1	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.22	0.21	0.23	23	59931	80	5	72	3	84
ASE_00176	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	65	59940	30	4	22	4	45
ASE_00179	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	44174	36	8	27	1	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	41	51263	60	4	52	4	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	57	57522	51	4	47	0	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	55	84145	57	2	53	2	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	71	61325	36	0	29	7	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	52	54519	46	8	36	2	50
ASE_00185	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	36	73419	81	14	67	0	92
ASE_00186	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	67	78889	56	3	44	9	65
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.48	0.56	55	68536	48	3	41	4	60
ASE_00189	RNaseP_bact_b links to Rfam database...	0.54	0.54	0.55	55	63090	47	7	38	2	47
ASE_00190	RNaseP_bact_b links to Rfam database...	0.55	0.52	0.57	47	45369	40	2	33	5	43
ASE_00192	RNaseP_bact_b links to Rfam database...	0.47	0.45	0.49	60	84543	68	10	53	5	73
ASE_00194	RNaseP_bact_b links to Rfam database...	0.40	0.39	0.42	47	73423	67	15	51	1	72
ASE_00195	-	0.61	0.58	0.64	77	86200	46	8	35	3	56
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.81	56	31557	16	2	11	3	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	56	89129	76	1	67	8	89
ASE_00198	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	47	52564	44	2	37	5	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	53	46565	51	4	43	4	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.53	0.49	0.58	55	67801	46	7	33	6	57
ASE_00205	RNaseP_arch links to Rfam database...	0.52	0.52	0.53	47	45967	45	10	32	3	43
ASE_00209	RNaseP_arch links to Rfam database...	0.62	0.58	0.66	51	42994	26	4	22	0	37
ASE_00210	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	36	27199	28	6	20	2	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	59	93832	80	3	67	10	89
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	18	4	13	1	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	65	56187	35	2	26	7	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	28	48429	60	7	52	1	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	51	39264	26	7	18	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.25	17	40401	54	6	46	2	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.35	34	64522	65	3	61	1	83
ASE_00222	RNaseP_arch links to Rfam database...	0.52	0.50	0.55	78	111958	65	5	60	0	79
ASE_00227	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	38	78898	67	3	64	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	32	46890	50	11	38	1	54
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	42398	44	6	36	2	41
ASE_00231	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	58	47808	33	4	25	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.69	59	38418	29	8	18	3	25
ASE_00234	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	36	75360	71	9	61	1	93
ASE_00237	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	7	45676	81	21	49	11	49
ASE_00238	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	50	64163	50	2	46	2	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	24	46575	68	3	63	2	69
ASE_00241	RNaseP_bact_a links to Rfam database...	0.20	0.18	0.23	16	43886	55	3	51	1	71
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	60976	34	3	30	1	46
ASE_00246	RNaseP_nuc links to Rfam database...	0.29	0.28	0.30	19	48141	65	6	39	20	48
ASE_00247	RNaseP_nuc links to Rfam database...	0.60	0.63	0.57	40	54215	63	11	19	33	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.19	0.18	0.20	20	62382	81	6	73	2	94
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	75	78886	49	2	40	7	56
ASE_00252	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	76	115292	77	4	68	5	92
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	30	36781	48	3	42	3	52
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	69	74572	54	4	46	4	61
ASE_00257	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	47	50951	49	3	39	7	50
ASE_00259	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.50	47	73059	50	5	42	3	74
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	71	70390	40	4	35	1	49
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.44	43	49043	59	4	51	4	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.23	17	45075	63	8	50	5	71
ASE_00270	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	54	72279	57	5	52	0	74
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	45	55529	38	5	32	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	34	48121	50	17	33	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	15	53215	73	2	69	2	86
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	39	51908	60	9	47	4	59
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	58	44482	17	0	11	6	30
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	77708	50	7	36	7	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	56	61675	47	3	42	2	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	22	58211	82	8	70	4	86
ASE_00285	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	63	68895	53	2	46	5	59
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	32	46589	45	4	40	1	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	28	54852	67	9	57	1	75
ASE_00288	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	56	45984	22	0	16	6	37
ASE_00289	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	102	100895	33	3	25	5	55
ASE_00291	-	0.46	0.46	0.47	43	48425	50	9	39	2	51
ASE_00292	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.48	52	81701	58	3	54	1	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	70	114326	87	5	80	2	101
ASE_00295	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	54	73816	53	6	44	3	77
ASE_00296	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	21	91680	105	6	99	0	124
ASE_00297	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	32	52887	59	8	48	3	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	24	67418	87	14	72	1	89
ASE_00299	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	45	49366	50	7	37	6	55
ASE_00313	RNaseP_nuc links to Rfam database...	0.60	0.57	0.62	51	62399	57	4	27	26	38
ASE_00316	RNaseP_nuc links to Rfam database...	0.45	0.48	0.42	47	107767	88	16	50	22	51
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.62	0.66	73	80090	41	10	27	4	45
ASE_00327	RNaseP_nuc links to Rfam database...	0.78	0.75	0.82	67	57209	33	3	12	18	22
ASE_00328	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	67	72665	47	2	37	8	45
ASE_00330	RNaseP_nuc links to Rfam database...	0.64	0.67	0.63	60	56184	52	10	26	16	30
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	55	81683	75	3	69	3	83
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.68	67	75367	37	5	27	5	49
ASE_00337	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	40	39263	49	5	32	12	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.44	0.43	0.45	42	66336	67	6	46	15	56
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	59	80085	64	7	49	8	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	30	45965	64	10	51	3	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	62381	29	2	25	2	42
ASE_00343	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	78	83323	53	7	28	18	35
ASE_00346	RNaseP_arch links to Rfam database...	0.38	0.36	0.41	35	48120	53	4	46	3	62
ASE_00353	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	64	57867	40	2	37	1	43
ASE_00359	RNaseP_arch links to Rfam database...	0.11	0.10	0.12	8	42711	62	2	57	3	72
ASE_00360	RNaseP_arch links to Rfam database...	0.40	0.37	0.44	24	29348	31	3	28	0	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	51	75358	59	8	49	2	76
ASE_00362	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	48	48114	45	4	39	2	43
ASE_00363	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	45	51272	50	5	38	7	49
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	54193	39	3	35	1	51
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	39	58555	60	10	49	1	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	37	42988	54	2	44	8	49
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	59	55846	42	6	34	2	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	41832	40	6	33	1	50
ASE_00372	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	55	51908	43	7	33	3	45
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44762	39	6	33	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	56	60286	41	2	34	5	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	37	4	32	1	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	76	57536	23	2	16	5	31
ASE_00379	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	39	45976	42	7	34	1	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	41	54857	51	1	47	3	58
ASE_00382	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	57	41832	18	5	11	2	27
ASE_00383	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	38	54526	51	3	48	0	67
ASE_00384	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	48435	62	3	50	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	45	41831	31	10	19	2	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	54	50313	38	7	29	2	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	50	55845	53	5	45	3	54
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	48	1	37	10	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	42117	46	1	34	11	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	32	47816	53	2	45	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	51	46884	41	2	34	5	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	56	41542	28	1	17	10	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	38	41536	46	8	34	4	45
ASE_00397	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	49	54526	41	4	36	1	56
ASE_00398	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	39	55847	61	6	53	2	65
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57867	48	7	40	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	65	76912	53	7	44	2	61
ASE_00402	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	47	42412	29	7	20	2	38
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	24	55855	70	4	62	4	83
ASE_00404	RNaseP_bact_a links to Rfam database...	0.17	0.16	0.18	14	42992	70	4	61	5	71
ASE_00406	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	51	48739	49	2	36	11	43
ASE_00408	-	0.42	0.39	0.46	28	32324	39	3	30	6	43
ASE_00409	-	0.30	0.29	0.32	24	40965	57	6	46	5	59
ASE_00411	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	24	49367	65	7	57	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.27	26	58215	71	9	61	1	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.49	39	44471	45	1	40	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.26	22	46276	65	0	62	3	73
ASE_00415	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	61	54852	38	5	28	5	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	63	77304	57	5	49	3	64
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.36	37	54512	68	9	57	2	63
ASE_00418	RNaseP_arch links to Rfam database...	0.12	0.12	0.12	9	38703	71	10	59	2	66
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.78	73	54853	22	2	18	2	30
ASE_00422	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	57	46883	38	3	28	7	37
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	38	56853	62	6	56	0	71
ASE_00426	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.50	55	60965	55	10	45	0	53
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	64	76523	52	6	43	3	61
ASE_00429	-	0.64	0.59	0.68	39	28146	21	3	15	3	27
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	60	46881	36	1	29	6	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	49	46284	34	1	26	7	46
ASE_00434	RNaseP_bact_b links to Rfam database...	0.78	0.71	0.85	78	68173	28	1	13	14	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	57	79283	62	1	60	1	78
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	45	65968	53	1	52	0	71
ASE_00441	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	73	64171	21	6	11	4	39
ASE_00447	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	75	60278	31	4	21	6	41
ASE_00448	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	38	64167	62	5	51	6	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	44	70766	67	2	64	1	81
CRW_00004	-	0.67	0.69	0.65	91	154150	77	9	40	28	40
CRW_00005	-	0.59	0.58	0.59	77	137945	75	6	47	22	55
CRW_00007	-	0.45	0.47	0.43	62	144847	96	21	61	14	71
CRW_00009	-	0.46	0.47	0.46	65	137933	94	12	65	17	73
CRW_00010	-	0.57	0.58	0.57	73	102703	64	14	41	9	53
CRW_00011	-	0.65	0.67	0.64	92	118198	57	9	42	6	46
CRW_00012	-	0.26	0.27	0.25	38	147000	122	27	88	7	103
CRW_00013	Intron_gpI links to Rfam database...	0.10	0.10	0.11	11	103641	107	9	79	19	104
CRW_00014	-	0.48	0.48	0.48	59	103617	70	12	52	6	64
CRW_00016	Intron_gpI links to Rfam database...	0.66	0.61	0.72	73	77320	38	5	23	10	47
CRW_00017	-	0.27	0.29	0.25	26	92131	104	22	56	26	65
CRW_00018	-	0.27	0.31	0.24	37	182556	138	39	78	21	84
CRW_00019	-	0.69	0.67	0.72	92	127637	57	9	27	21	45
CRW_00423	-	0.15	0.14	0.15	27	242379	163	24	126	13	162
CRW_00429	-	0.19	0.18	0.20	42	306725	171	21	148	2	191
CRW_00443	-	0.15	0.13	0.18	34	456305	172	19	132	21	226
CRW_00605	-	0.75	0.74	0.76	52	183853	112	1	15	96	18
CRW_00608	-	0.72	0.67	0.77	53	35709	16	1	15	0	26
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.48	0.51	39	36239	38	6	31	1	42
CRW_00611	-	0.76	0.73	0.80	55	31306	21	4	10	7	20
CRW_00612	-	0.52	0.52	0.53	48	270390	161	1	41	119	45
CRW_00613	Intron_gpI links to Rfam database...	0.81	0.73	0.89	57	34916	15	0	7	8	21
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	132	26	51	55	52
CRW_00618	Intron_gpI links to Rfam database...	0.37	0.39	0.34	24	56210	60	15	31	14	37
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164963	138	7	55	76	73
CRW_00620	Intron_gpI links to Rfam database...	0.19	0.21	0.18	13	150901	128	14	47	67	50
CRW_00621	Intron_gpI links to Rfam database...	0.28	0.25	0.30	18	153121	121	12	30	79	53
CRW_00623	Intron_gpI links to Rfam database...	0.12	0.13	0.11	11	129696	122	21	67	34	72
CRW_00626	-	0.61	0.64	0.59	67	100911	62	9	38	15	37
CRW_00629	-	0.47	0.45	0.48	55	91264	60	11	48	1	67
CRW_00632	-	0.81	0.77	0.84	99	82910	24	7	12	5	29
CRW_00633	Intron_gpI links to Rfam database...	0.74	0.72	0.77	76	63447	26	8	15	3	30
CRW_00634	Intron_gpI links to Rfam database...	0.44	0.41	0.47	39	64537	48	18	26	4	55
CRW_00635	-	0.36	0.36	0.36	49	109142	90	15	72	3	88
CRW_00636	-	0.38	0.37	0.40	53	114826	84	18	63	3	90
CRW_00637	-	0.40	0.40	0.40	63	133746	97	9	85	3	95
CRW_00639	-	0.35	0.36	0.34	50	126611	99	24	71	4	88
CRW_00641	-	0.60	0.59	0.60	45	39828	38	6	24	8	31
CRW_00642	-	0.37	0.42	0.34	27	47198	62	15	38	9	38
CRW_00643	-	0.37	0.42	0.34	51	123104	111	29	72	10	71
CRW_00645	-	0.42	0.42	0.43	28	35446	45	10	27	8	39
CRW_00646	-	0.51	0.53	0.49	34	34910	38	7	29	2	30
CRW_00648	-	0.45	0.46	0.44	68	137920	95	11	76	8	80
CRW_00649	-	0.52	0.53	0.51	66	204350	127	9	55	63	58
CRW_00650	-	0.51	0.51	0.51	72	112908	74	10	60	4	70
CRW_00651	-	0.58	0.60	0.55	73	99996	65	11	48	6	48
CRW_00652	-	0.33	0.36	0.30	47	132200	116	24	84	8	83
CRW_00653	-	0.71	0.69	0.73	93	94703	37	2	32	3	41
CRW_00654	-	0.76	0.71	0.81	88	78101	25	4	17	4	36
CRW_00655	-	0.65	0.62	0.69	77	89141	36	7	28	1	47
CRW_00656	-	0.40	0.38	0.42	49	90407	75	10	59	6	80
CRW_00657	-	0.69	0.70	0.68	95	105890	50	7	38	5	41
CRW_00658	-	0.41	0.40	0.41	41	74592	58	12	46	0	61
CRW_00659	-	0.45	0.48	0.43	29	32317	48	8	31	9	32
CRW_00660	-	0.53	0.53	0.52	32	22094	30	5	24	1	28
CRW_00661	-	0.09	0.10	0.08	5	24247	61	20	38	3	46
CRW_00662	-	0.13	0.14	0.12	9	28606	71	8	57	6	56
CRW_00663	-	0.19	0.20	0.18	12	26041	59	7	46	6	49
CRW_00664	-	0.37	0.38	0.36	30	53544	61	12	42	7	48
CRW_00665	-	0.00	0.00	0.00	0	23592	62	16	45	1	48
CRW_00666	-	0.38	0.37	0.39	47	96019	85	8	67	10	79
CRW_00668	-	0.51	0.51	0.51	77	163728	83	13	60	10	73
CRW_00669	-	0.48	0.48	0.49	57	97344	61	18	42	1	62
CRW_00670	Intron_gpI links to Rfam database...	0.54	0.53	0.55	63	70011	53	6	45	2	57
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.59	0.74	69	62742	28	5	19	4	48
CRW_00672	Intron_gpI links to Rfam database...	0.52	0.50	0.56	55	72291	48	9	35	4	56
CRW_00673	-	0.63	0.67	0.59	70	100010	50	28	20	2	35
CRW_00674	Intron_gpI links to Rfam database...	0.43	0.42	0.44	52	83319	69	14	51	4	72
CRW_00676	Intron_gpI links to Rfam database...	0.30	0.30	0.31	35	93414	85	9	70	6	80
CRW_00677	-	0.57	0.60	0.55	63	71895	55	14	38	3	42
CRW_00679	-	0.38	0.39	0.38	42	76525	71	18	51	2	65
CRW_00681	-	0.28	0.29	0.26	33	112925	97	30	62	5	79
CRW_00685	-	0.40	0.43	0.38	46	156958	99	26	50	23	60
CRW_00686	-	0.36	0.33	0.39	41	95162	76	4	59	13	84
CRW_00687	-	0.54	0.56	0.51	37	28608	37	8	27	2	29
CRW_00688	-	0.61	0.60	0.63	34	21891	22	0	20	2	23
CRW_00689	-	0.43	0.43	0.44	33	33595	47	7	35	5	44
CRW_00690	-	0.66	0.67	0.65	46	33340	29	9	16	4	23
CRW_00691	-	0.71	0.72	0.70	48	27192	25	4	17	4	19
CRW_00692	Intron_gpI links to Rfam database...	0.26	0.27	0.25	24	68538	77	23	50	4	66
CRW_00693	-	0.69	0.70	0.67	86	89124	51	9	34	8	36
CRW_00694	-	0.60	0.61	0.60	74	85782	52	9	40	3	48
CRW_00699	-	0.27	0.25	0.28	32	91692	82	12	70	0	94
CRW_00700	-	0.68	0.69	0.68	102	180750	71	14	35	22	45
CRW_00702	-	0.68	0.75	0.62	56	357344	176	25	10	141	19
CRW_00703	-	0.25	0.27	0.23	18	40390	66	14	48	4	48
CRW_00704	-	0.67	0.66	0.68	62	386669	180	11	18	151	32
CRW_00714	-	0.32	0.36	0.29	39	186220	127	28	68	31	68
CRW_00715	-	0.53	0.53	0.54	55	69276	49	6	41	2	49
CRW_00716	-	0.59	0.58	0.60	52	193667	101	9	25	67	37
CRW_00717	-	0.42	0.39	0.45	58	153607	87	13	57	17	90
CRW_00718	-	0.31	0.28	0.34	54	189878	115	11	93	11	137
CRW_00719	-	0.54	0.54	0.53	49	230089	113	11	32	70	42
CRW_00720	-	0.29	0.34	0.25	31	208211	121	25	68	28	60
CRW_00721	-	0.37	0.38	0.36	26	58581	61	14	32	15	42
CRW_00764	-	0.05	0.05	0.05	9	252931	177	35	141	1	187
CRW_00775	-	0.07	0.07	0.07	14	314619	197	49	139	9	198
CRW_00780	-	0.23	0.21	0.25	54	475586	170	24	136	10	201
CRW_00794	-	0.30	0.27	0.32	67	434571	161	24	116	21	179
CRW_00796	-	0.09	0.09	0.11	20	384814	170	27	142	1	215
CRW_00815	-	0.31	0.33	0.30	52	159719	126	25	99	2	106
CRW_00816	-	0.37	0.38	0.36	49	143778	102	15	74	13	80
CRW_00820	-	0.47	0.46	0.49	66	136368	83	10	59	14	79
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00018	-	0.19	0.20	0.21	4	1016	15	2	13	0	16
PDB_00020	-	0.75	0.65	0.87	13	765	2	0	2	0	7
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00072	-	0.30	0.31	0.30	65	148025	150	10	140	0	145
PDB_00078	-	0.68	0.63	0.73	73	49670	27	9	18	0	42
PDB_00079	-	0.48	0.44	0.53	62	121653	64	17	39	8	80
PDB_00123	-	0.33	0.33	0.33	12	4150	24	0	24	0	24
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00278	-	0.61	0.57	0.65	41	24913	22	4	18	0	31
PDB_00352	-	0.86	0.79	0.94	15	1209	1	0	1	0	4
PDB_00370	-	0.00	0.00	0.00	0	15181	44	13	31	0	25
PDB_00403	-	0.53	0.52	0.54	79	124604	74	11	56	7	74
PDB_00423	-	0.55	0.50	0.61	37	26735	24	4	20	0	37
PDB_00447	-	0.11	0.11	0.12	5	7097	38	7	31	0	39
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00701	-	0.11	0.11	0.12	12	45351	88	9	79	0	97
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.70	0.67	16	2677	9	0	8	1	7
PDB_00747	-	0.57	0.48	0.68	38	24475	19	1	17	1	42
PDB_00804	-	0.00	0.00	0.00	0	15344	56	10	46	0	50
PDB_00827	Intron_gpI links to Rfam database...	0.68	0.59	0.79	48	26967	15	0	13	2	33
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.49	0.44	0.56	18	4721	14	0	14	0	23
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00874	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_00886	-	-0.01	0.00	0.00	0	4147	39	0	39	0	40
PDB_00917	-	0.60	0.57	0.64	54	35161	34	4	26	4	41
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00919	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.59	50	44168	38	3	32	3	53
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01059	-	0.88	1.00	0.78	7	222	2	2	0	0	0
PDB_01070	-	0.78	0.70	0.86	38	12676	6	0	6	0	16
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01092	glmS links to Rfam database...	0.81	0.75	0.89	39	10109	6	1	4	1	13
PDB_01129	-	0.40	0.39	0.41	28	35443	44	12	28	4	43
PDB_01157	-	0.08	0.08	0.09	8	49999	81	10	69	2	90
PDB_01166	-	0.61	0.58	0.64	123	181914	73	14	55	4	89
PDB_01194	-	0.89	0.87	0.93	13	482	1	1	0	0	2
PDB_01201	-	0.88	0.77	1.00	17	1111	0	0	0	0	5
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01250	-	0.17	0.15	0.19	6	12059	25	5	20	0	35
PDB_01260	-	0.92	0.92	0.92	23	1805	2	1	1	0	2
PDB_01281	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_01299	-	0.71	0.67	0.77	10	890	3	1	2	0	5
PDB_01309	-	0.12	0.15	0.10	6	9122	56	12	40	4	33
RFA_00597	Telomerase-vert links to Rfam database...	0.34	0.37	0.31	40	97776	101	20	67	14	69
RFA_00598	Telomerase-vert links to Rfam database...	0.35	0.36	0.35	36	84563	76	12	55	9	65
RFA_00599	Telomerase-vert links to Rfam database...	0.39	0.40	0.38	44	101359	92	13	59	20	67
RFA_00600	Telomerase-vert links to Rfam database...	0.18	0.21	0.16	21	120164	129	29	81	19	79
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.10	0.08	11	99104	129	18	102	9	103
RFA_00602	Telomerase-vert links to Rfam database...	0.41	0.44	0.39	51	101343	91	19	62	10	65
RFA_00632	HDV_ribozyme links to Rfam database...	0.88	0.89	0.86	25	4066	4	3	1	0	3
RFA_00636	HDV_ribozyme links to Rfam database...	0.73	0.71	0.74	20	3978	7	5	2	0	8
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00769	Corona_pk3 links to Rfam database...	0.85	0.94	0.77	17	1931	5	4	1	0	1
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	4	0	0	4	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	5	1	0	4	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	0	0	0	0	1
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
TMR_00007	tmRNA links to Rfam database...	0.34	0.32	0.36	35	61679	67	14	48	5	73
TMR_00008	tmRNA links to Rfam database...	0.36	0.36	0.37	38	65964	71	12	52	7	68
TMR_00010	tmRNA links to Rfam database...	0.35	0.35	0.35	34	57873	63	7	56	0	62
TMR_00012	tmRNA links to Rfam database...	0.31	0.31	0.32	25	64541	72	12	42	18	56
TMR_00014	tmRNA links to Rfam database...	0.66	0.64	0.69	70	68534	41	12	19	10	40
TMR_00017	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67070	73	5	62	6	78
TMR_00018	tmRNA links to Rfam database...	0.56	0.59	0.54	54	64520	48	15	31	2	38
TMR_00028	tmRNA links to Rfam database...	0.52	0.51	0.53	49	62743	45	5	38	2	48
TMR_00030	tmRNA links to Rfam database...	0.23	0.23	0.23	25	75746	88	12	72	4	86
TMR_00034	tmRNA links to Rfam database...	0.60	0.60	0.61	66	59923	47	6	36	5	44
TMR_00035	tmRNA links to Rfam database...	0.57	0.60	0.55	59	67788	59	11	38	10	39
TMR_00036	tmRNA links to Rfam database...	0.49	0.51	0.47	52	90415	64	13	45	6	49
TMR_00038	tmRNA links to Rfam database...	0.28	0.28	0.29	31	71145	81	15	62	4	79
TMR_00042	tmRNA links to Rfam database...	0.16	0.15	0.16	15	62744	81	8	68	5	83
TMR_00046	tmRNA links to Rfam database...	0.28	0.29	0.26	28	62729	78	15	63	0	68
TMR_00047	tmRNA links to Rfam database...	0.29	0.33	0.25	19	48439	70	23	35	12	38
TMR_00048	tmRNA links to Rfam database...	0.31	0.33	0.30	31	64876	75	16	57	2	64
TMR_00049	tmRNA links to Rfam database...	0.52	0.52	0.52	45	63103	52	7	35	10	42
TMR_00051	tmRNA links to Rfam database...	0.56	0.54	0.59	51	65616	49	3	33	13	43
TMR_00055	tmRNA links to Rfam database...	0.27	0.26	0.29	30	78898	78	13	62	3	84
TMR_00057	tmRNA links to Rfam database...	0.34	0.38	0.30	30	73820	83	23	47	13	49
TMR_00061	tmRNA links to Rfam database...	0.19	0.19	0.20	19	59589	84	9	68	7	80
TMR_00062	tmRNA links to Rfam database...	0.72	0.69	0.74	72	78509	40	8	17	15	32
TMR_00064	tmRNA links to Rfam database...	0.45	0.45	0.46	46	76927	55	18	37	0	57
TMR_00065	tmRNA links to Rfam database...	0.50	0.48	0.53	51	76540	46	14	31	1	55
TMR_00067	tmRNA links to Rfam database...	0.38	0.39	0.38	44	82100	73	11	60	2	70
TMR_00073	tmRNA links to Rfam database...	0.40	0.38	0.42	45	65597	62	6	55	1	72
TMR_00076	tmRNA links to Rfam database...	0.37	0.38	0.37	38	70773	75	8	57	10	62
TMR_00080	tmRNA links to Rfam database...	0.45	0.46	0.44	44	70400	57	19	37	1	52
TMR_00081	tmRNA links to Rfam database...	0.55	0.50	0.62	53	67075	33	9	24	0	53
TMR_00082	tmRNA links to Rfam database...	0.50	0.49	0.52	47	67805	48	11	33	4	49
TMR_00083	tmRNA links to Rfam database...	0.37	0.37	0.37	39	68159	71	11	56	4	66
TMR_00092	tmRNA links to Rfam database...	0.46	0.50	0.42	50	67409	72	15	54	3	51
TMR_00093	tmRNA links to Rfam database...	0.23	0.24	0.23	24	64157	80	14	66	0	78
TMR_00096	tmRNA links to Rfam database...	0.26	0.26	0.27	26	64883	71	11	60	0	74
TMR_00101	tmRNA links to Rfam database...	0.48	0.47	0.50	50	64161	55	8	42	5	57
TMR_00102	tmRNA links to Rfam database...	0.46	0.47	0.45	47	64156	61	17	41	3	54
TMR_00103	tmRNA links to Rfam database...	0.67	0.67	0.67	72	64153	37	7	29	1	36
TMR_00104	-	0.17	0.19	0.15	13	66709	77	22	51	4	57
TMR_00106	tmRNA links to Rfam database...	0.41	0.40	0.42	48	89985	67	21	46	0	72
TMR_00109	tmRNA links to Rfam database...	0.40	0.37	0.45	45	88309	63	9	47	7	77
TMR_00111	tmRNA links to Rfam database...	0.49	0.47	0.52	57	90415	61	7	46	8	65
TMR_00116	tmRNA links to Rfam database...	0.62	0.60	0.65	62	64885	45	3	30	12	42
TMR_00117	tmRNA links to Rfam database...	0.64	0.62	0.66	73	80090	46	4	33	9	45
TMR_00118	tmRNA links to Rfam database...	0.34	0.33	0.35	39	81295	73	5	67	1	81
TMR_00119	tmRNA links to Rfam database...	0.31	0.31	0.32	32	71910	73	9	59	5	72
TMR_00123	tmRNA links to Rfam database...	0.26	0.25	0.27	25	66338	71	4	63	4	76
TMR_00124	tmRNA links to Rfam database...	0.49	0.49	0.49	48	70403	61	12	37	12	50
TMR_00125	tmRNA links to Rfam database...	0.63	0.62	0.65	61	64167	37	6	27	4	38
TMR_00127	tmRNA links to Rfam database...	0.65	0.64	0.67	62	62742	31	13	18	0	35
TMR_00128	tmRNA links to Rfam database...	0.44	0.44	0.44	42	60979	56	11	43	2	54
TMR_00131	tmRNA links to Rfam database...	0.46	0.44	0.47	44	64886	57	11	39	7	55
TMR_00135	tmRNA links to Rfam database...	0.75	0.70	0.80	69	62749	23	6	11	6	30
TMR_00136	tmRNA links to Rfam database...	0.28	0.30	0.27	30	74579	88	13	69	6	71
TMR_00137	tmRNA links to Rfam database...	0.39	0.36	0.43	32	61000	48	8	35	5	57
TMR_00139	tmRNA links to Rfam database...	0.65	0.68	0.62	62	62028	47	20	18	9	29
TMR_00140	tmRNA links to Rfam database...	0.62	0.59	0.66	59	73831	37	7	23	7	41
TMR_00142	tmRNA links to Rfam database...	0.54	0.53	0.55	54	70778	56	10	34	12	48
TMR_00143	tmRNA links to Rfam database...	0.49	0.48	0.52	49	64525	56	9	37	10	54
TMR_00144	tmRNA links to Rfam database...	0.37	0.36	0.39	37	74209	64	11	48	5	66
TMR_00146	tmRNA links to Rfam database...	0.84	0.71	1.00	30	32101	23	0	0	23	12
TMR_00150	tmRNA links to Rfam database...	0.46	0.50	0.43	21	43022	50	10	18	22	21
TMR_00152	tmRNA links to Rfam database...	0.31	0.30	0.32	35	81296	83	8	67	8	80
TMR_00155	tmRNA links to Rfam database...	0.56	0.53	0.59	55	61683	45	4	34	7	49
TMR_00156	tmRNA links to Rfam database...	0.24	0.24	0.24	23	60282	77	19	54	4	74
TMR_00158	tmRNA links to Rfam database...	0.51	0.49	0.52	49	60632	49	4	41	4	50
TMR_00159	tmRNA links to Rfam database...	0.19	0.21	0.19	19	62026	83	19	64	0	73
TMR_00160	tmRNA links to Rfam database...	0.37	0.37	0.37	35	64525	70	15	45	10	60
TMR_00164	tmRNA links to Rfam database...	0.54	0.52	0.56	55	66697	51	4	39	8	51
TMR_00165	tmRNA links to Rfam database...	0.49	0.48	0.51	47	61683	55	11	35	9	50
TMR_00166	tmRNA links to Rfam database...	0.27	0.27	0.28	27	61679	78	7	63	8	74
TMR_00168	tmRNA links to Rfam database...	0.79	0.79	0.80	90	60962	24	6	17	1	24
TMR_00173	tmRNA links to Rfam database...	0.34	0.40	0.29	17	42137	64	19	22	23	25
TMR_00179	tmRNA links to Rfam database...	0.42	0.42	0.41	41	67062	65	10	48	7	57
TMR_00180	tmRNA links to Rfam database...	0.38	0.37	0.39	37	67067	63	19	38	6	62
TMR_00182	tmRNA links to Rfam database...	0.10	0.10	0.11	10	66339	87	10	71	6	92
TMR_00183	tmRNA links to Rfam database...	0.22	0.22	0.22	23	63087	85	12	68	5	80
TMR_00184	tmRNA links to Rfam database...	0.40	0.41	0.40	42	63084	68	6	58	4	60
TMR_00193	tmRNA links to Rfam database...	0.19	0.20	0.18	16	59251	80	20	53	7	64
TMR_00194	tmRNA links to Rfam database...	0.41	0.40	0.42	37	62746	55	11	41	3	56
TMR_00196	tmRNA links to Rfam database...	0.42	0.38	0.46	37	60995	51	6	37	8	60
TMR_00199	tmRNA links to Rfam database...	0.27	0.25	0.28	23	62754	62	18	40	4	69
TMR_00200	-	0.40	0.40	0.41	30	41542	54	8	36	10	45
TMR_00204	tmRNA links to Rfam database...	0.51	0.47	0.55	46	60294	47	7	31	9	51
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.25	25	72291	81	7	67	7	78
TMR_00223	tmRNA links to Rfam database...	0.45	0.43	0.48	41	64175	49	12	33	4	54
TMR_00224	tmRNA links to Rfam database...	0.40	0.39	0.41	39	64884	62	10	47	5	62
TMR_00226	tmRNA links to Rfam database...	0.48	0.48	0.49	50	69648	61	10	43	8	55
TMR_00227	tmRNA links to Rfam database...	0.44	0.46	0.43	46	70018	65	12	49	4	55
TMR_00228	tmRNA links to Rfam database...	0.31	0.32	0.30	35	88294	89	22	59	8	73
TMR_00234	tmRNA links to Rfam database...	0.36	0.32	0.41	33	58915	53	9	39	5	69
TMR_00238	tmRNA links to Rfam database...	0.33	0.36	0.31	36	84549	87	16	65	6	65
TMR_00239	tmRNA links to Rfam database...	0.60	0.63	0.58	60	61672	47	11	33	3	36
TMR_00240	tmRNA links to Rfam database...	0.53	0.54	0.52	46	63101	49	13	30	6	39
TMR_00246	-	0.52	0.50	0.55	17	78179	97	3	11	83	17
TMR_00248	tmRNA links to Rfam database...	0.16	0.18	0.13	7	54232	77	20	26	31	31
TMR_00257	tmRNA links to Rfam database...	0.24	0.22	0.25	22	67073	67	13	53	1	76
TMR_00259	tmRNA links to Rfam database...	0.60	0.57	0.63	59	67802	38	11	24	3	44
TMR_00261	tmRNA links to Rfam database...	0.41	0.41	0.42	41	66698	56	12	44	0	60
TMR_00262	tmRNA links to Rfam database...	0.44	0.46	0.42	48	74191	66	19	47	0	56
TMR_00271	tmRNA links to Rfam database...	0.44	0.45	0.44	41	64168	61	6	46	9	50
TMR_00274	tmRNA links to Rfam database...	0.26	0.27	0.25	28	66683	91	13	71	7	77
TMR_00278	tmRNA links to Rfam database...	0.44	0.45	0.42	46	67787	72	5	58	9	56
TMR_00279	tmRNA links to Rfam database...	0.46	0.48	0.45	45	68905	63	10	46	7	49
TMR_00280	tmRNA links to Rfam database...	0.48	0.49	0.48	49	65963	67	6	48	13	52
TMR_00283	tmRNA links to Rfam database...	0.51	0.53	0.49	51	65237	56	14	39	3	45
TMR_00289	tmRNA links to Rfam database...	0.41	0.41	0.42	40	67065	67	11	45	11	58
TMR_00290	tmRNA links to Rfam database...	0.38	0.36	0.41	33	64181	48	11	36	1	59
TMR_00296	tmRNA links to Rfam database...	0.22	0.23	0.21	23	68898	88	19	66	3	75
TMR_00298	tmRNA links to Rfam database...	0.40	0.42	0.39	42	68157	72	11	55	6	59
TMR_00300	tmRNA links to Rfam database...	0.64	0.60	0.68	67	70401	42	3	29	10	45
TMR_00301	tmRNA links to Rfam database...	0.28	0.26	0.29	25	82130	66	12	48	6	71
TMR_00302	tmRNA links to Rfam database...	0.52	0.55	0.48	52	77313	71	20	36	15	42
TMR_00305	tmRNA links to Rfam database...	0.49	0.47	0.52	48	60983	50	9	35	6	54
TMR_00306	tmRNA links to Rfam database...	0.29	0.29	0.29	31	64155	81	7	68	6	75
TMR_00310	tmRNA links to Rfam database...	0.61	0.59	0.63	58	63811	42	6	28	8	40
TMR_00317	tmRNA links to Rfam database...	0.60	0.61	0.59	62	68160	47	13	30	4	40
TMR_00331	tmRNA links to Rfam database...	0.30	0.33	0.28	27	66697	85	11	60	14	55
TMR_00332	tmRNA links to Rfam database...	0.51	0.48	0.55	48	67073	45	7	33	5	51
TMR_00334	tmRNA links to Rfam database...	0.56	0.54	0.58	55	66700	48	8	32	8	46
TMR_00337	tmRNA links to Rfam database...	0.60	0.58	0.62	69	82917	43	12	30	1	50
TMR_00340	tmRNA links to Rfam database...	0.47	0.46	0.49	37	64185	59	3	36	20	44
TMR_00341	tmRNA links to Rfam database...	0.29	0.30	0.28	28	63091	73	17	54	2	64
TMR_00343	tmRNA links to Rfam database...	0.39	0.39	0.39	41	64876	67	10	53	4	64
TMR_00345	tmRNA links to Rfam database...	0.54	0.54	0.53	56	63798	49	12	37	0	48
TMR_00346	tmRNA links to Rfam database...	0.57	0.54	0.60	51	64176	38	9	25	4	43
TMR_00348	tmRNA links to Rfam database...	0.54	0.49	0.60	49	77339	50	7	26	17	50
TMR_00352	tmRNA links to Rfam database...	0.14	0.16	0.12	12	95168	106	29	57	20	63
TMR_00353	tmRNA links to Rfam database...	0.53	0.54	0.51	57	84143	64	23	32	9	48
TMR_00357	tmRNA links to Rfam database...	0.57	0.62	0.53	57	82921	57	23	27	7	35
TMR_00358	tmRNA links to Rfam database...	0.46	0.47	0.44	47	74972	65	20	39	6	52
TMR_00361	-	0.34	0.38	0.32	27	93443	62	20	38	4	45
TMR_00366	tmRNA links to Rfam database...	0.50	0.51	0.50	51	67794	55	15	36	4	49
TMR_00372	tmRNA links to Rfam database...	0.49	0.48	0.50	46	70408	56	10	36	10	50
TMR_00374	tmRNA links to Rfam database...	0.21	0.23	0.20	21	81706	88	18	65	5	71
TMR_00375	tmRNA links to Rfam database...	0.48	0.51	0.45	50	73425	71	17	44	10	48
TMR_00376	tmRNA links to Rfam database...	0.34	0.37	0.32	35	74582	81	20	54	7	60
TMR_00378	tmRNA links to Rfam database...	0.43	0.44	0.42	43	67793	60	13	47	0	54
TMR_00383	tmRNA links to Rfam database...	0.29	0.31	0.28	31	66683	83	12	69	2	69
TMR_00384	tmRNA links to Rfam database...	0.20	0.19	0.20	21	65599	91	7	76	8	87
TMR_00393	tmRNA links to Rfam database...	0.52	0.58	0.46	31	53234	61	17	19	25	22
TMR_00395	tmRNA links to Rfam database...	0.44	0.42	0.47	46	64522	56	8	44	4	63
TMR_00398	tmRNA links to Rfam database...	0.40	0.39	0.42	41	65244	60	6	50	4	65
TMR_00399	tmRNA links to Rfam database...	0.26	0.27	0.25	25	64879	79	17	59	3	69
TMR_00404	tmRNA links to Rfam database...	0.42	0.46	0.39	42	67419	67	21	46	0	50
TMR_00408	tmRNA links to Rfam database...	0.38	0.40	0.36	35	65969	72	16	46	10	53
TMR_00409	tmRNA links to Rfam database...	0.57	0.59	0.55	27	68586	66	5	17	44	19
TMR_00411	tmRNA links to Rfam database...	0.40	0.39	0.41	34	60993	54	13	35	6	53
TMR_00415	tmRNA links to Rfam database...	0.31	0.32	0.31	32	67057	75	13	59	3	69
TMR_00419	tmRNA links to Rfam database...	0.63	0.63	0.63	70	81698	60	19	23	18	41
TMR_00422	tmRNA links to Rfam database...	0.59	0.58	0.60	53	67808	48	6	29	13	39
TMR_00423	tmRNA links to Rfam database...	0.12	0.14	0.11	10	63816	87	19	58	10	63
TMR_00427	tmRNA links to Rfam database...	0.33	0.31	0.36	30	67445	60	9	44	7	67
TMR_00429	tmRNA links to Rfam database...	0.58	0.60	0.57	65	74577	51	13	36	2	44
TMR_00430	tmRNA links to Rfam database...	0.45	0.44	0.47	48	82519	56	17	37	2	61
TMR_00431	tmRNA links to Rfam database...	0.63	0.62	0.64	34	51950	52	7	12	33	21
TMR_00432	tmRNA links to Rfam database...	0.31	0.33	0.30	34	79687	80	9	70	1	70
TMR_00433	tmRNA links to Rfam database...	0.17	0.17	0.17	18	80092	90	13	77	0	88
TMR_00439	tmRNA links to Rfam database...	0.41	0.45	0.38	45	68518	82	19	53	10	56
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.12	13	62019	102	19	77	6	70
TMR_00443	tmRNA links to Rfam database...	0.52	0.48	0.56	50	67071	42	9	31	2	54
TMR_00448	tmRNA links to Rfam database...	0.59	0.57	0.61	52	62043	40	3	30	7	40
TMR_00451	tmRNA links to Rfam database...	0.21	0.22	0.20	20	63448	82	16	62	4	69
TMR_00457	tmRNA links to Rfam database...	0.43	0.44	0.42	45	78500	63	11	50	2	57
TMR_00458	tmRNA links to Rfam database...	0.37	0.34	0.40	32	63465	53	15	34	4	61
TMR_00460	tmRNA links to Rfam database...	0.43	0.42	0.44	44	79302	62	8	47	7	62
TMR_00465	tmRNA links to Rfam database...	0.32	0.32	0.32	30	64166	69	19	46	4	64
TMR_00469	tmRNA links to Rfam database...	0.35	0.34	0.35	34	64524	67	5	57	5	66
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64519	86	16	62	8	74
TMR_00478	tmRNA links to Rfam database...	0.19	0.19	0.18	19	71905	91	15	71	5	80
TMR_00498	tmRNA links to Rfam database...	0.44	0.44	0.44	44	68905	68	14	43	11	55
TMR_00499	tmRNA links to Rfam database...	0.35	0.37	0.33	37	64509	79	6	68	5	62
TMR_00501	tmRNA links to Rfam database...	0.44	0.46	0.42	42	62381	60	14	44	2	50
TMR_00502	tmRNA links to Rfam database...	0.36	0.37	0.36	34	75372	75	8	52	15	59
TMR_00503	tmRNA links to Rfam database...	0.17	0.16	0.18	18	67795	83	5	78	0	93
TMR_00519	tmRNA links to Rfam database...	0.25	0.25	0.24	24	63091	77	12	63	2	71
TMR_00520	tmRNA links to Rfam database...	0.35	0.33	0.37	33	63100	66	11	46	9	66
TMR_00522	tmRNA links to Rfam database...	0.37	0.36	0.39	35	63100	62	5	50	7	62
TMR_00528	tmRNA links to Rfam database...	0.46	0.44	0.48	43	63100	58	12	35	11	54
TMR_00540	tmRNA links to Rfam database...	0.10	0.11	0.11	11	73432	101	12	81	8	93
TMR_00541	tmRNA links to Rfam database...	0.31	0.30	0.32	32	61675	76	8	61	7	73
TMR_00544	tmRNA links to Rfam database...	0.36	0.34	0.37	37	89577	73	10	52	11	71
TMR_00547	tmRNA links to Rfam database...	0.45	0.44	0.46	44	65246	51	7	44	0	56
TMR_00553	tmRNA links to Rfam database...	0.49	0.49	0.49	40	48123	47	15	27	5	41
TMR_00559	tmRNA links to Rfam database...	0.35	0.33	0.37	33	62391	63	7	50	6	68
TMR_00560	tmRNA links to Rfam database...	0.33	0.31	0.37	30	60993	57	5	47	5	68
TMR_00562	tmRNA links to Rfam database...	0.25	0.26	0.24	27	72660	86	14	70	2	75
TMR_00563	tmRNA links to Rfam database...	0.59	0.59	0.59	61	75363	48	13	29	6	42
TMR_00566	tmRNA links to Rfam database...	0.38	0.37	0.39	37	60631	58	9	49	0	63
TMR_00568	tmRNA links to Rfam database...	0.35	0.33	0.37	33	60637	62	7	49	6	66
TMR_00570	tmRNA links to Rfam database...	0.62	0.58	0.67	56	60295	35	3	24	8	41
TMR_00571	tmRNA links to Rfam database...	0.43	0.41	0.45	41	60635	57	9	41	7	58
TMR_00576	tmRNA links to Rfam database...	0.59	0.58	0.60	59	60280	46	12	27	7	43
TMR_00579	tmRNA links to Rfam database...	0.17	0.19	0.16	17	80496	100	21	67	12	73
TMR_00580	tmRNA links to Rfam database...	0.46	0.43	0.49	43	60638	48	5	40	3	57
TMR_00581	tmRNA links to Rfam database...	0.51	0.50	0.53	49	62388	49	11	33	5	49
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.61	53	60988	42	5	29	8	44
TMR_00586	tmRNA links to Rfam database...	0.42	0.39	0.44	38	60989	53	9	39	5	59
TMR_00587	tmRNA links to Rfam database...	0.83	0.83	0.83	83	61325	23	4	13	6	17
TMR_00588	tmRNA links to Rfam database...	0.42	0.43	0.41	43	77316	70	13	49	8	58
TMR_00594	tmRNA links to Rfam database...	0.31	0.31	0.31	32	79297	74	12	60	2	72
TMR_00596	tmRNA links to Rfam database...	0.35	0.34	0.36	32	78120	71	13	45	13	63
TMR_00599	tmRNA links to Rfam database...	0.30	0.35	0.25	25	63091	75	29	45	1	47
TMR_00600	tmRNA links to Rfam database...	0.15	0.15	0.15	17	79688	95	10	85	0	98
TMR_00601	tmRNA links to Rfam database...	0.79	0.71	0.88	30	58962	47	1	3	43	12
TMR_00603	tmRNA links to Rfam database...	0.63	0.72	0.54	31	60321	70	10	16	44	12
TMR_00604	tmRNA links to Rfam database...	0.69	0.70	0.68	78	62720	38	6	31	1	34
TMR_00605	tmRNA links to Rfam database...	0.53	0.53	0.53	57	74197	55	22	29	4	51
TMR_00606	tmRNA links to Rfam database...	0.53	0.52	0.54	56	68903	56	6	41	9	51
TMR_00609	tmRNA links to Rfam database...	0.73	0.73	0.73	83	63433	36	6	24	6	30
TMR_00610	tmRNA links to Rfam database...	0.67	0.65	0.68	68	62028	40	7	25	8	36
TMR_00611	tmRNA links to Rfam database...	0.76	0.78	0.74	80	61317	33	8	20	5	22
TMR_00612	tmRNA links to Rfam database...	0.50	0.53	0.47	55	60609	62	9	53	0	49
TMR_00614	tmRNA links to Rfam database...	0.60	0.58	0.63	60	60980	42	2	33	7	44
TMR_00615	tmRNA links to Rfam database...	0.49	0.47	0.51	45	63815	45	14	29	2	51
TMR_00616	tmRNA links to Rfam database...	0.26	0.26	0.26	26	67061	78	9	65	4	73
TMR_00617	tmRNA links to Rfam database...	0.39	0.43	0.36	25	34646	47	16	29	2	33
TMR_00623	tmRNA links to Rfam database...	0.50	0.47	0.53	51	61328	48	5	41	2	57
TMR_00624	tmRNA links to Rfam database...	0.73	0.72	0.73	78	62374	31	13	16	2	30
TMR_00625	tmRNA links to Rfam database...	0.32	0.34	0.31	36	78887	84	18	62	4	70
TMR_00626	tmRNA links to Rfam database...	0.43	0.43	0.43	47	67787	68	4	58	6	62
TMR_00680	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67790	80	19	61	0	73
TMR_00681	tmRNA links to Rfam database...	0.48	0.47	0.49	46	65973	51	8	39	4	51
TMR_00683	tmRNA links to Rfam database...	0.26	0.27	0.26	27	82923	92	17	61	14	73
TMR_00686	tmRNA links to Rfam database...	0.33	0.34	0.32	37	71138	82	17	61	4	71
TMR_00687	tmRNA links to Rfam database...	0.25	0.25	0.24	28	71515	92	13	75	4	83
TMR_00696	tmRNA links to Rfam database...	0.47	0.44	0.50	50	84978	63	10	40	13	64
TMR_00698	tmRNA links to Rfam database...	0.16	0.16	0.16	17	63081	92	21	71	0	87
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	60	11	49	0	60
TMR_00702	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67055	83	7	73	3	74
TMR_00703	tmRNA links to Rfam database...	0.38	0.37	0.40	37	67435	58	5	51	2	62
TMR_00706	tmRNA links to Rfam database...	0.44	0.41	0.47	42	66341	48	8	39	1	61
TMR_00711	tmRNA links to Rfam database...	0.55	0.56	0.53	55	67793	55	12	36	7	43
TMR_00712	tmRNA links to Rfam database...	0.27	0.28	0.26	30	78491	85	18	67	0	79
TMR_00716	tmRNA links to Rfam database...	0.12	0.12	0.13	12	62741	86	6	76	4	88

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]