CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	UNAFold		RNASLOpt
MCC	0.468	>	0.445
Average MCC ± 95% Confidence Intervals	0.472 ± 0.016	>	0.454 ± 0.015
Sensitivity	0.464	>	0.419
Positive Predictive Value	0.474	<	0.474
Total TP	22235	>	20063
Total TN	28773541	<	28778139
Total FP	27753	>	24623
Total FP CONTRA	4236	>	3474
Total FP INCONS	20441	>	18777
Total FP COMP	3076	>	2372
Total FN	25664	<	27836
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of UNAFold and RNASLOpt. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for UNAFold and RNASLOpt).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for UNAFold and RNASLOpt).
Comparison of average Matthews Correlation Coefficients (MCCs) for UNAFold and RNASLOpt. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for UNAFold and RNASLOpt).

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Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	22235
Total TN	28773541
Total FP	27753
Total FP CONTRA	4236
Total FP INCONS	20441
Total FP COMP	3076
Total FN	25664

Total Scores
MCC	0.468
Average MCC ± 95% Confidence Intervals	0.472 ± 0.016
Sensitivity	0.464
Positive Predictive Value	0.474
Nr of predictions	534

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2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.66	46	34121	30	2	22	6	29
ASE_00002	RNaseP_arch links to Rfam database...	0.66	0.62	0.70	45	35447	24	3	16	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.81	50	26044	15	0	12	3	17
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50966	75	6	50	19	46
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00025	RNaseP_nuc links to Rfam database...	0.22	0.24	0.21	17	78526	115	12	51	52	54
ASE_00026	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	56	59582	55	1	46	8	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	63	64883	37	2	32	3	58
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	54	75734	70	8	59	3	78
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.64	53	50320	30	5	25	0	50
ASE_00047	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	41	74189	76	4	71	1	89
ASE_00052	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	53	61329	48	2	41	5	59
ASE_00053	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	72	79275	57	5	49	3	61
ASE_00056	-	0.38	0.36	0.41	26	30812	48	4	34	10	46
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00066	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	83	72277	31	4	26	1	47
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	68161	46	4	39	3	57
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00079	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	52	55519	40	4	36	0	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00089	-	0.65	0.58	0.72	46	31311	21	0	18	3	33
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00096	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	62	63441	43	4	39	0	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00108	RNaseP_nuc links to Rfam database...	0.24	0.29	0.20	18	46883	81	21	49	11	45
ASE_00111	RNaseP_nuc links to Rfam database...	0.25	0.32	0.20	18	49997	80	31	40	9	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	86	75362	24	5	13	6	30
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00116	RNaseP_arch links to Rfam database...	0.20	0.20	0.20	13	31561	55	2	50	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00120	RNaseP_arch links to Rfam database...	0.51	0.49	0.53	46	46885	42	8	32	2	48
ASE_00121	RNaseP_arch links to Rfam database...	0.24	0.24	0.24	22	45060	68	5	63	0	70
ASE_00122	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	40	43282	43	2	41	0	48
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	60	50315	30	4	24	2	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00139	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.38	34	54196	58	4	51	3	70
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00145	RNaseP_arch links to Rfam database...	0.46	0.45	0.48	50	70021	59	7	47	5	61
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00151	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	27	51915	61	7	54	0	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00154	RNaseP_arch links to Rfam database...	0.64	0.63	0.65	67	65238	39	4	32	3	40
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	84	28	43	13	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	52	57194	49	7	38	4	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00176	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	64	59931	39	6	30	3	46
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00187	RNaseP_arch links to Rfam database...	0.47	0.44	0.49	51	68531	58	6	47	5	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.52	0.49	0.54	50	63098	47	8	34	5	52
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00194	RNaseP_bact_b links to Rfam database...	0.54	0.53	0.56	63	73423	54	11	39	4	56
ASE_00196	RNaseP_arch links to Rfam database...	0.73	0.72	0.75	54	31554	21	2	16	3	21
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.65	0.61	0.69	68	67798	35	7	23	5	44
ASE_00205	RNaseP_arch links to Rfam database...	0.43	0.43	0.43	39	45966	54	7	44	3	51
ASE_00209	RNaseP_arch links to Rfam database...	0.39	0.38	0.42	33	42992	46	5	41	0	55
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	28	6	21	1	26
ASE_00213	RNaseP_arch links to Rfam database...	0.74	0.73	0.76	48	27198	16	3	12	1	18
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00227	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	38	78885	80	5	75	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45667	96	29	57	10	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	55	46578	40	2	30	8	38
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00246	RNaseP_nuc links to Rfam database...	0.16	0.18	0.15	12	48123	79	19	51	9	55
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	54207	97	18	48	31	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00250	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	60	78884	62	5	54	3	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00259	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.52	55	73048	53	4	46	3	66
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.89	0.83	0.97	83	49055	16	0	3	13	17
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00288	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	40	45970	47	3	43	1	53
ASE_00291	-	0.37	0.36	0.39	34	48429	54	9	44	1	60
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	77	73805	41	6	32	3	54
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00299	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	49362	52	5	40	7	52
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.72	63	62394	46	6	18	22	26
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.76	0.85	68	57211	32	4	8	20	21
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00330	RNaseP_nuc links to Rfam database...	0.70	0.70	0.71	63	56191	46	4	22	20	27
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00337	RNaseP_nuc links to Rfam database...	0.58	0.58	0.59	41	39270	43	5	24	14	30
ASE_00338	RNaseP_nuc links to Rfam database...	0.60	0.54	0.66	53	66350	49	5	22	22	45
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00346	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	28	48115	64	7	55	2	69
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	46	3	38	5	41
ASE_00360	RNaseP_arch links to Rfam database...	0.22	0.23	0.22	15	29335	57	10	43	4	50
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	75	60280	28	1	22	5	35
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00380	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	44	54857	50	1	44	5	55
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	42	41832	35	4	27	4	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00408	-	0.49	0.48	0.50	34	32317	39	2	32	5	37
ASE_00409	-	0.50	0.49	0.51	41	40960	40	2	38	0	42
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00414	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	33	46278	56	2	47	7	62
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54509	72	10	59	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.21	0.21	0.20	16	38702	65	12	51	2	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00426	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	43	60969	63	9	54	0	65
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00429	-	0.39	0.38	0.41	25	28142	44	1	35	8	41
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	47	46274	44	4	35	5	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.66	65	68167	46	8	25	13	45
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	51	65967	48	2	46	0	65
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	55	60273	53	1	49	3	61
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
CRW_00016	Intron_gpI links to Rfam database...	0.62	0.57	0.67	68	77320	45	5	28	12	52
CRW_00443	-	0.38	0.36	0.41	93	456264	154	19	114	21	167
CRW_00608	-	0.86	0.84	0.89	66	35704	18	0	8	10	13
CRW_00610	Intron_gpI links to Rfam database...	0.45	0.44	0.46	36	36236	43	6	37	0	45
CRW_00611	-	0.61	0.60	0.63	45	31303	34	1	26	7	30
CRW_00613	Intron_gpI links to Rfam database...	0.63	0.58	0.68	45	34914	29	1	20	8	33
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.20	0.17	12	56210	83	10	48	25	49
CRW_00633	Intron_gpI links to Rfam database...	0.69	0.67	0.71	71	63446	33	8	21	4	35
CRW_00634	Intron_gpI links to Rfam database...	0.33	0.34	0.33	32	64522	70	14	52	4	62
CRW_00641	-	0.44	0.46	0.43	35	39821	56	9	38	9	41
CRW_00642	-	0.41	0.45	0.38	29	47201	56	12	36	8	36
CRW_00645	-	0.77	0.81	0.74	54	35438	28	8	11	9	13
CRW_00646	-	0.51	0.53	0.50	34	34912	39	6	28	5	30
CRW_00654	-	0.70	0.67	0.73	83	78096	36	4	27	5	41
CRW_00658	-	0.48	0.48	0.47	49	74587	58	22	33	3	53
CRW_00659	-	0.37	0.41	0.34	25	32312	52	16	32	4	36
CRW_00660	-	0.54	0.55	0.54	33	22094	31	7	21	3	27
CRW_00661	-	0.20	0.22	0.18	11	24249	52	16	34	2	40
CRW_00662	-	0.36	0.37	0.36	24	28613	50	7	36	7	41
CRW_00663	-	0.00	0.00	0.00	0	26039	67	11	56	0	61
CRW_00664	-	0.17	0.18	0.16	14	53538	79	16	60	3	64
CRW_00665	-	0.17	0.19	0.16	9	23596	51	10	38	3	39
CRW_00670	Intron_gpI links to Rfam database...	0.79	0.74	0.83	89	70018	21	6	12	3	31
CRW_00671	Intron_gpI links to Rfam database...	0.65	0.62	0.68	72	62729	39	7	27	5	45
CRW_00672	Intron_gpI links to Rfam database...	0.48	0.49	0.47	54	72275	65	19	42	4	57
CRW_00677	-	0.53	0.53	0.52	56	71902	59	13	39	7	49
CRW_00679	-	0.22	0.22	0.22	24	76525	93	14	73	6	83
CRW_00687	-	0.66	0.70	0.62	46	28606	32	8	20	4	20
CRW_00688	-	0.75	0.77	0.73	44	21885	17	7	9	1	13
CRW_00689	-	0.65	0.68	0.63	52	33588	32	11	19	2	25
CRW_00690	-	0.62	0.59	0.64	41	33347	30	7	16	7	28
CRW_00691	-	0.58	0.60	0.56	40	27190	33	6	25	2	27
CRW_00692	Intron_gpI links to Rfam database...	0.20	0.21	0.19	19	68537	84	24	55	5	71
CRW_00703	-	0.53	0.58	0.49	38	40393	46	15	24	7	28
CRW_00715	-	0.76	0.73	0.78	76	69281	24	3	18	3	28
CRW_00721	-	0.52	0.59	0.47	40	58567	61	17	29	15	28
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00078	-	0.44	0.42	0.48	48	49669	53	6	47	0	67
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	0.59	0.50	0.71	5	489	2	0	2	0	5
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00209	-	0.56	0.45	0.71	5	554	2	0	2	0	6
PDB_00243	-	0.63	0.58	0.70	7	620	3	0	3	0	5
PDB_00278	-	0.19	0.19	0.19	14	24904	58	7	51	0	58
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00370	-	0.09	0.12	0.07	3	15179	45	12	31	2	22
PDB_00423	-	0.17	0.16	0.18	12	26731	53	2	51	0	62
PDB_00447	-	0.44	0.39	0.52	17	7107	16	6	10	0	27
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00701	-	0.47	0.45	0.49	49	45351	52	5	46	1	60
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	24	5	19	0	23
PDB_00747	-	0.66	0.60	0.73	48	24465	18	0	18	0	32
PDB_00804	-	0.19	0.20	0.18	10	15344	46	10	36	0	40
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.52	0.66	42	26964	23	1	21	1	39
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00857	-	0.54	0.40	0.75	6	1073	2	0	2	0	9
PDB_00874	-	0.10	0.10	0.14	2	932	12	2	10	0	18
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00917	-	0.49	0.47	0.51	45	35157	49	4	39	6	50
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.55	48	44165	43	3	37	3	55
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01059	-	0.75	0.57	1.00	4	227	0	0	0	0	3
PDB_01070	-	0.31	0.30	0.33	16	12671	34	2	31	1	38
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01092	glmS links to Rfam database...	0.74	0.65	0.83	34	10112	8	1	6	1	18
PDB_01129	-	0.27	0.28	0.26	20	35434	62	15	42	5	51
PDB_01157	-	0.29	0.29	0.30	28	49993	65	9	56	0	70
PDB_01194	-	-0.02	0.00	0.00	0	488	8	0	8	0	15
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.71	0.63	0.80	12	1161	3	2	1	0	7
PDB_01250	-	0.10	0.10	0.12	4	12056	30	7	23	0	37
PDB_01260	-	0.53	0.44	0.65	11	1813	6	0	6	0	14
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01309	-	-0.01	0.00	0.00	0	9122	58	7	51	0	39
RFA_00632	HDV_ribozyme links to Rfam database...	0.34	0.36	0.33	10	4065	20	2	18	0	18
RFA_00636	HDV_ribozyme links to Rfam database...	0.43	0.43	0.44	12	3978	15	2	13	0	16
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	7	1	6	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.61	0.56	0.67	10	2001	8	0	5	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	4	1	0	3	8
RFA_00779	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	15	2	13	0	16
RFA_00809	RydC links to Rfam database...	0.37	0.38	0.38	6	2129	10	1	9	0	10
TMR_00007	tmRNA links to Rfam database...	0.29	0.28	0.30	30	61677	74	11	58	5	78
TMR_00008	tmRNA links to Rfam database...	0.50	0.48	0.52	51	65967	59	10	38	11	55
TMR_00010	tmRNA links to Rfam database...	0.30	0.31	0.30	30	57869	71	14	57	0	66
TMR_00012	tmRNA links to Rfam database...	0.28	0.28	0.27	23	64536	76	20	41	15	58
TMR_00014	tmRNA links to Rfam database...	0.52	0.50	0.54	55	68533	54	12	35	7	55
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00028	tmRNA links to Rfam database...	0.39	0.41	0.37	40	62726	72	15	54	3	57
TMR_00030	tmRNA links to Rfam database...	0.20	0.21	0.20	23	75741	96	12	79	5	88
TMR_00034	tmRNA links to Rfam database...	0.63	0.60	0.66	66	59931	41	6	28	7	44
TMR_00035	tmRNA links to Rfam database...	0.33	0.35	0.32	34	67791	76	9	62	5	64
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00047	tmRNA links to Rfam database...	0.26	0.30	0.23	17	48442	73	16	41	16	40
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00049	tmRNA links to Rfam database...	0.53	0.54	0.52	47	63099	56	9	35	12	40
TMR_00051	tmRNA links to Rfam database...	0.65	0.61	0.70	57	65621	44	2	23	19	37
TMR_00055	tmRNA links to Rfam database...	0.12	0.13	0.12	15	78874	114	25	89	0	99
TMR_00057	tmRNA links to Rfam database...	0.07	0.09	0.06	7	73812	109	31	70	8	72
TMR_00061	tmRNA links to Rfam database...	0.24	0.25	0.24	25	59580	87	11	69	7	74
TMR_00062	tmRNA links to Rfam database...	0.56	0.57	0.55	59	78499	63	8	40	15	45
TMR_00064	tmRNA links to Rfam database...	0.27	0.27	0.27	28	76923	77	20	57	0	75
TMR_00065	tmRNA links to Rfam database...	0.44	0.44	0.43	47	76527	63	12	50	1	59
TMR_00073	tmRNA links to Rfam database...	0.43	0.43	0.43	50	65588	65	5	60	0	67
TMR_00076	tmRNA links to Rfam database...	0.32	0.33	0.32	33	70772	77	14	57	6	67
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00081	tmRNA links to Rfam database...	0.47	0.45	0.48	48	67062	52	12	39	1	58
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00083	tmRNA links to Rfam database...	0.43	0.43	0.44	45	68162	66	15	43	8	60
TMR_00092	tmRNA links to Rfam database...	0.55	0.57	0.53	58	67418	56	14	38	4	43
TMR_00093	tmRNA links to Rfam database...	0.42	0.43	0.41	44	64153	66	14	50	2	58
TMR_00096	tmRNA links to Rfam database...	0.12	0.12	0.12	12	64882	94	16	70	8	88
TMR_00101	tmRNA links to Rfam database...	0.33	0.33	0.33	35	64155	76	10	61	5	72
TMR_00102	tmRNA links to Rfam database...	0.26	0.28	0.25	28	64150	86	16	67	3	73
TMR_00103	tmRNA links to Rfam database...	0.57	0.56	0.57	61	64154	50	8	38	4	47
TMR_00104	-	0.09	0.10	0.08	7	66702	92	33	53	6	63
TMR_00116	tmRNA links to Rfam database...	0.57	0.56	0.58	58	64880	54	5	37	12	46
TMR_00119	tmRNA links to Rfam database...	0.49	0.49	0.49	51	71905	60	8	46	6	53
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00124	tmRNA links to Rfam database...	0.47	0.48	0.46	47	70397	70	15	41	14	51
TMR_00125	tmRNA links to Rfam database...	0.20	0.20	0.20	20	64159	86	17	65	4	79
TMR_00127	tmRNA links to Rfam database...	0.58	0.57	0.60	55	62743	43	9	28	6	42
TMR_00128	tmRNA links to Rfam database...	0.36	0.36	0.36	35	60979	61	11	50	0	61
TMR_00131	tmRNA links to Rfam database...	0.29	0.28	0.30	28	64886	73	12	54	7	71
TMR_00135	tmRNA links to Rfam database...	0.59	0.56	0.63	55	62747	43	4	29	10	44
TMR_00136	tmRNA links to Rfam database...	0.19	0.20	0.18	20	74581	93	21	69	3	81
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00139	tmRNA links to Rfam database...	0.57	0.62	0.54	56	62024	55	18	30	7	35
TMR_00140	tmRNA links to Rfam database...	0.49	0.49	0.50	49	73822	65	10	39	16	51
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00143	tmRNA links to Rfam database...	0.48	0.49	0.49	50	64517	63	9	44	10	53
TMR_00144	tmRNA links to Rfam database...	0.26	0.27	0.24	28	74189	90	15	73	2	75
TMR_00146	tmRNA links to Rfam database...	0.87	0.88	0.86	37	32088	34	2	4	28	5
TMR_00150	tmRNA links to Rfam database...	0.71	0.71	0.70	30	43028	52	3	10	39	12
TMR_00155	tmRNA links to Rfam database...	0.39	0.37	0.41	38	61683	64	5	50	9	66
TMR_00156	tmRNA links to Rfam database...	0.36	0.36	0.36	35	60282	61	12	49	0	62
TMR_00158	tmRNA links to Rfam database...	0.37	0.35	0.39	35	60637	60	5	49	6	64
TMR_00159	tmRNA links to Rfam database...	0.36	0.36	0.36	33	62036	70	13	46	11	59
TMR_00160	tmRNA links to Rfam database...	0.45	0.44	0.45	42	64527	59	13	38	8	53
TMR_00164	tmRNA links to Rfam database...	0.29	0.28	0.30	30	66696	77	10	59	8	76
TMR_00165	tmRNA links to Rfam database...	0.30	0.32	0.29	31	61669	85	12	64	9	66
TMR_00166	tmRNA links to Rfam database...	0.30	0.29	0.32	29	61685	65	7	55	3	72
TMR_00168	tmRNA links to Rfam database...	0.68	0.66	0.71	75	60969	36	3	28	5	39
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.28	15	42142	64	16	22	26	27
TMR_00179	tmRNA links to Rfam database...	0.52	0.53	0.51	52	67060	60	10	39	11	46
TMR_00180	tmRNA links to Rfam database...	0.63	0.63	0.63	62	67063	49	8	28	13	37
TMR_00182	tmRNA links to Rfam database...	0.11	0.12	0.11	12	66322	100	13	83	4	90
TMR_00183	tmRNA links to Rfam database...	0.18	0.17	0.18	18	63090	87	6	76	5	85
TMR_00184	tmRNA links to Rfam database...	0.40	0.40	0.40	41	63087	64	4	58	2	61
TMR_00193	tmRNA links to Rfam database...	0.43	0.44	0.43	35	59258	56	12	35	9	45
TMR_00194	tmRNA links to Rfam database...	0.48	0.48	0.47	45	62740	61	10	40	11	48
TMR_00196	tmRNA links to Rfam database...	0.38	0.38	0.39	37	60979	64	8	51	5	60
TMR_00199	tmRNA links to Rfam database...	0.48	0.49	0.47	45	62739	58	21	30	7	47
TMR_00200	-	0.56	0.56	0.57	42	41542	42	3	29	10	33
TMR_00204	tmRNA links to Rfam database...	0.39	0.40	0.39	39	60277	68	16	46	6	58
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00223	tmRNA links to Rfam database...	0.10	0.11	0.10	10	64165	90	15	71	4	85
TMR_00224	tmRNA links to Rfam database...	0.36	0.37	0.36	37	64876	67	11	56	0	64
TMR_00226	tmRNA links to Rfam database...	0.30	0.32	0.29	34	69632	86	16	69	1	71
TMR_00227	tmRNA links to Rfam database...	0.21	0.22	0.20	22	70013	93	11	79	3	79
TMR_00234	tmRNA links to Rfam database...	0.30	0.31	0.29	32	58887	81	8	69	4	70
TMR_00239	tmRNA links to Rfam database...	0.63	0.65	0.62	62	61676	40	7	31	2	34
TMR_00240	tmRNA links to Rfam database...	0.20	0.21	0.20	18	63098	77	15	59	3	67
TMR_00246	-	0.43	0.50	0.38	17	78165	113	6	22	85	17
TMR_00248	tmRNA links to Rfam database...	0.13	0.16	0.10	6	54226	87	25	28	34	32
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00259	tmRNA links to Rfam database...	0.58	0.57	0.58	59	67795	45	13	29	3	44
TMR_00261	tmRNA links to Rfam database...	0.52	0.52	0.52	53	66694	53	14	34	5	48
TMR_00262	tmRNA links to Rfam database...	0.49	0.51	0.47	53	74192	60	19	41	0	51
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00274	tmRNA links to Rfam database...	0.30	0.30	0.29	32	66684	84	13	66	5	73
TMR_00278	tmRNA links to Rfam database...	0.43	0.44	0.42	45	67789	71	7	55	9	57
TMR_00279	tmRNA links to Rfam database...	0.52	0.52	0.52	49	68912	55	7	38	10	45
TMR_00280	tmRNA links to Rfam database...	0.34	0.35	0.34	35	65963	81	8	60	13	66
TMR_00283	tmRNA links to Rfam database...	0.41	0.44	0.39	42	65234	68	19	46	3	54
TMR_00289	tmRNA links to Rfam database...	0.59	0.59	0.59	58	67063	52	11	29	12	40
TMR_00290	tmRNA links to Rfam database...	0.21	0.22	0.21	20	64164	85	15	62	8	72
TMR_00296	tmRNA links to Rfam database...	0.29	0.30	0.29	29	68907	78	18	52	8	69
TMR_00298	tmRNA links to Rfam database...	0.47	0.50	0.45	50	68153	66	16	46	4	51
TMR_00300	tmRNA links to Rfam database...	0.53	0.54	0.53	60	70387	63	9	44	10	52
TMR_00302	tmRNA links to Rfam database...	0.34	0.37	0.32	35	77311	82	20	55	7	59
TMR_00305	tmRNA links to Rfam database...	0.69	0.66	0.74	67	60984	32	5	19	8	35
TMR_00306	tmRNA links to Rfam database...	0.11	0.11	0.12	12	64158	93	9	82	2	94
TMR_00310	tmRNA links to Rfam database...	0.60	0.58	0.63	57	63812	38	9	25	4	41
TMR_00317	tmRNA links to Rfam database...	0.60	0.62	0.58	63	68156	49	14	32	3	39
TMR_00331	tmRNA links to Rfam database...	0.50	0.54	0.46	44	66699	66	8	44	14	38
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00334	tmRNA links to Rfam database...	0.28	0.28	0.28	28	66696	79	10	61	8	73
TMR_00340	tmRNA links to Rfam database...	0.37	0.38	0.36	31	64176	74	5	49	20	50
TMR_00341	tmRNA links to Rfam database...	0.20	0.22	0.19	20	63084	89	23	63	3	72
TMR_00343	tmRNA links to Rfam database...	0.32	0.30	0.33	32	64884	72	12	52	8	73
TMR_00345	tmRNA links to Rfam database...	0.47	0.46	0.48	48	63803	60	9	43	8	56
TMR_00346	tmRNA links to Rfam database...	0.49	0.51	0.47	48	64158	57	15	40	2	46
TMR_00348	tmRNA links to Rfam database...	0.23	0.23	0.22	23	77317	98	13	68	17	76
TMR_00358	tmRNA links to Rfam database...	0.61	0.60	0.62	59	74983	54	17	19	18	40
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00372	tmRNA links to Rfam database...	0.58	0.59	0.58	57	70401	53	7	35	11	39
TMR_00375	tmRNA links to Rfam database...	0.47	0.48	0.46	47	73433	66	17	39	10	51
TMR_00376	tmRNA links to Rfam database...	0.46	0.46	0.45	44	74594	70	17	36	17	51
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00383	tmRNA links to Rfam database...	0.20	0.21	0.19	21	66686	96	20	68	8	79
TMR_00384	tmRNA links to Rfam database...	0.33	0.31	0.36	34	65608	68	2	59	7	74
TMR_00393	tmRNA links to Rfam database...	0.57	0.62	0.52	33	53238	56	13	17	26	20
TMR_00395	tmRNA links to Rfam database...	0.39	0.37	0.42	40	64524	60	6	50	4	69
TMR_00398	tmRNA links to Rfam database...	0.67	0.64	0.70	68	65244	35	2	27	6	38
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00408	tmRNA links to Rfam database...	0.63	0.65	0.61	57	65972	48	13	24	11	31
TMR_00409	tmRNA links to Rfam database...	0.69	0.74	0.64	34	68582	73	7	12	54	12
TMR_00411	tmRNA links to Rfam database...	0.51	0.52	0.50	45	60985	50	12	33	5	42
TMR_00415	tmRNA links to Rfam database...	0.35	0.35	0.35	35	67062	67	13	51	3	66
TMR_00422	tmRNA links to Rfam database...	0.52	0.52	0.52	48	67803	54	10	35	9	44
TMR_00423	tmRNA links to Rfam database...	0.08	0.10	0.07	7	63799	106	25	72	9	66
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00429	tmRNA links to Rfam database...	0.50	0.48	0.52	52	74591	57	7	41	9	57
TMR_00431	tmRNA links to Rfam database...	0.68	0.69	0.68	38	51947	63	8	10	45	17
TMR_00432	tmRNA links to Rfam database...	0.21	0.22	0.20	23	79687	96	17	73	6	81
TMR_00439	tmRNA links to Rfam database...	0.39	0.42	0.38	42	68523	80	21	49	10	59
TMR_00441	tmRNA links to Rfam database...	0.14	0.16	0.13	13	62028	95	24	63	8	70
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00448	tmRNA links to Rfam database...	0.31	0.33	0.30	30	62028	76	12	58	6	62
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00457	tmRNA links to Rfam database...	0.55	0.54	0.56	55	78507	51	10	34	7	47
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00460	tmRNA links to Rfam database...	0.43	0.44	0.43	47	79291	71	13	50	8	59
TMR_00465	tmRNA links to Rfam database...	0.24	0.26	0.23	24	64155	82	23	59	0	70
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00478	tmRNA links to Rfam database...	0.44	0.45	0.42	45	71904	67	15	46	6	54
TMR_00498	tmRNA links to Rfam database...	0.46	0.45	0.46	45	68909	63	10	42	11	54
TMR_00499	tmRNA links to Rfam database...	0.20	0.21	0.18	21	64506	100	10	83	7	78
TMR_00501	tmRNA links to Rfam database...	0.37	0.37	0.37	34	62390	62	9	48	5	58
TMR_00502	tmRNA links to Rfam database...	0.22	0.24	0.21	22	75360	93	20	64	9	71
TMR_00503	tmRNA links to Rfam database...	0.34	0.33	0.35	37	67790	76	5	64	7	74
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00541	tmRNA links to Rfam database...	0.42	0.41	0.43	43	61676	65	3	54	8	62
TMR_00547	tmRNA links to Rfam database...	0.50	0.50	0.51	50	65243	50	4	44	2	50
TMR_00553	tmRNA links to Rfam database...	0.44	0.43	0.44	35	48126	50	4	40	6	46
TMR_00559	tmRNA links to Rfam database...	0.41	0.40	0.43	40	62388	57	9	44	4	61
TMR_00560	tmRNA links to Rfam database...	0.40	0.40	0.40	39	60978	67	6	52	9	59
TMR_00562	tmRNA links to Rfam database...	0.26	0.26	0.26	27	72667	85	13	64	8	75
TMR_00563	tmRNA links to Rfam database...	0.37	0.39	0.35	40	75352	81	19	55	7	63
TMR_00566	tmRNA links to Rfam database...	0.25	0.25	0.24	25	60623	82	12	66	4	75
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00570	tmRNA links to Rfam database...	0.37	0.37	0.38	36	60282	70	8	52	10	61
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00576	tmRNA links to Rfam database...	0.29	0.28	0.30	29	60282	72	16	51	5	73
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00581	tmRNA links to Rfam database...	0.14	0.14	0.13	14	62374	100	11	82	7	84
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00587	tmRNA links to Rfam database...	0.72	0.70	0.74	70	61330	30	4	21	5	30
TMR_00588	tmRNA links to Rfam database...	0.21	0.22	0.20	22	77312	96	20	67	9	79
TMR_00594	tmRNA links to Rfam database...	0.21	0.22	0.21	23	79291	91	20	67	4	81
TMR_00596	tmRNA links to Rfam database...	0.16	0.17	0.15	16	78106	98	15	73	10	79
TMR_00599	tmRNA links to Rfam database...	0.16	0.18	0.14	13	63097	90	28	52	10	59
TMR_00600	tmRNA links to Rfam database...	0.18	0.18	0.19	21	79687	94	18	74	2	94
TMR_00601	tmRNA links to Rfam database...	0.46	0.48	0.45	20	58952	81	2	22	57	22
TMR_00603	tmRNA links to Rfam database...	0.55	0.56	0.55	24	60334	76	7	13	56	19
TMR_00604	tmRNA links to Rfam database...	0.65	0.63	0.67	70	62731	38	3	31	4	42
TMR_00605	tmRNA links to Rfam database...	0.54	0.52	0.57	56	74207	49	11	31	7	52
TMR_00606	tmRNA links to Rfam database...	0.38	0.38	0.38	41	68897	73	7	61	5	66
TMR_00609	tmRNA links to Rfam database...	0.63	0.61	0.64	69	63439	40	8	30	2	44
TMR_00610	tmRNA links to Rfam database...	0.57	0.57	0.57	59	62024	57	7	38	12	45
TMR_00611	tmRNA links to Rfam database...	0.43	0.45	0.41	46	61314	65	16	49	0	56
TMR_00612	tmRNA links to Rfam database...	0.41	0.41	0.41	43	60620	69	7	56	6	61
TMR_00614	tmRNA links to Rfam database...	0.55	0.53	0.58	55	60980	49	3	37	9	49
TMR_00615	tmRNA links to Rfam database...	0.56	0.58	0.53	56	63798	52	19	30	3	40
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00617	tmRNA links to Rfam database...	0.38	0.41	0.35	24	34648	54	12	32	10	34
TMR_00623	tmRNA links to Rfam database...	0.39	0.37	0.42	40	61329	60	2	54	4	68
TMR_00624	tmRNA links to Rfam database...	0.48	0.47	0.49	51	62377	65	5	48	12	57
TMR_00625	tmRNA links to Rfam database...	0.22	0.23	0.21	24	78890	93	28	61	4	82
TMR_00626	tmRNA links to Rfam database...	0.37	0.39	0.36	42	67780	78	17	57	4	67
TMR_00680	tmRNA links to Rfam database...	0.20	0.21	0.20	21	67790	94	18	67	9	78
TMR_00681	tmRNA links to Rfam database...	0.56	0.55	0.58	53	65974	49	5	34	10	44
TMR_00686	tmRNA links to Rfam database...	0.45	0.45	0.45	49	71145	70	14	45	11	59
TMR_00687	tmRNA links to Rfam database...	0.37	0.35	0.38	39	71529	73	4	59	10	72
TMR_00698	tmRNA links to Rfam database...	0.56	0.55	0.58	57	63092	44	7	34	3	47
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63
TMR_00706	tmRNA links to Rfam database...	0.53	0.52	0.53	54	66328	52	6	42	4	49
TMR_00711	tmRNA links to Rfam database...	0.55	0.54	0.55	53	67800	50	13	30	7	45
TMR_00712	tmRNA links to Rfam database...	0.38	0.39	0.38	43	78492	73	22	49	2	66
TMR_00716	tmRNA links to Rfam database...	0.19	0.19	0.19	19	62737	79	15	64	0	81

^top

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

Total Base Pair Counts
Total TP	20063
Total TN	28778139
Total FP	24623
Total FP CONTRA	3474
Total FP INCONS	18777
Total FP COMP	2372
Total FN	27836

Total Scores
MCC	0.445
Average MCC ± 95% Confidence Intervals	0.454 ± 0.015
Sensitivity	0.419
Positive Predictive Value	0.474
Nr of predictions	534

^top

2. Individual counts for RNASLOpt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.55	0.49	0.61	37	34130	30	3	21	6	38
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.58	0.71	42	35452	20	2	15	3	31
ASE_00004	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	44	47807	44	2	42	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	64	57879	32	0	27	5	53
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	47511	35	8	26	1	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	40	59594	52	1	50	1	70
ASE_00009	RNaseP_arch links to Rfam database...	0.44	0.40	0.47	27	26049	30	3	27	0	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.52	54	73817	52	8	41	3	69
ASE_00014	RNaseP_arch links to Rfam database...	0.59	0.54	0.64	57	54196	33	3	29	1	49
ASE_00017	RNaseP_nuc links to Rfam database...	0.24	0.25	0.24	16	50973	67	12	39	16	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	65	73820	35	3	32	0	61
ASE_00025	RNaseP_nuc links to Rfam database...	0.22	0.23	0.21	16	78531	110	8	51	51	55
ASE_00026	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	56	59586	46	9	34	3	54
ASE_00033	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	64	64887	31	3	26	2	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	34	70406	64	4	56	4	84
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	60	75744	54	6	45	3	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	26	59260	54	3	51	0	84
ASE_00038	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.41	37	53538	54	9	44	1	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	49	78896	63	5	53	5	84
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.62	49	57551	32	2	28	2	59
ASE_00044	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.69	69	54515	35	4	27	4	36
ASE_00046	RNaseP_bact_a links to Rfam database...	0.29	0.25	0.35	26	50328	50	8	41	1	77
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	48	74196	61	1	60	0	82
ASE_00052	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	48	61330	50	14	33	3	64
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.65	73	79289	42	5	34	3	60
ASE_00056	-	0.60	0.50	0.72	36	30826	23	0	14	9	36
ASE_00064	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	45372	43	4	34	5	48
ASE_00066	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	68	72292	30	1	29	0	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	23	0	18	5	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	61	67796	40	2	37	1	58
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	64	68169	33	5	27	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.29	20	45081	54	7	42	5	66
ASE_00078	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.46	29	43008	41	1	33	7	54
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	56	55531	26	3	21	2	44
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	36	71530	65	6	59	0	87
ASE_00081	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.55	39	49699	32	4	28	0	58
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.51	45	70412	52	1	42	9	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	52	62392	43	5	32	6	58
ASE_00084	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	59	53549	24	2	18	4	40
ASE_00089	-	0.41	0.37	0.45	29	31311	35	0	35	0	50
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	55515	52	8	43	1	56
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	63453	42	5	37	0	62
ASE_00096	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	66	63443	38	0	37	1	49
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.57	56	64521	44	2	41	1	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	77	64160	24	5	19	0	42
ASE_00105	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.39	34	64174	56	6	47	3	77
ASE_00107	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.45	45	73052	56	1	55	0	82
ASE_00108	RNaseP_nuc links to Rfam database...	0.19	0.21	0.17	13	46894	76	16	48	12	50
ASE_00111	RNaseP_nuc links to Rfam database...	0.19	0.25	0.16	14	49996	84	33	43	8	43
ASE_00112	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	70	75377	25	4	15	6	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	58	54520	42	6	31	5	43
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.21	0.29	14	31577	35	3	32	0	52
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.35	32	60635	60	5	54	1	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	62744	27	1	24	2	42
ASE_00120	RNaseP_arch links to Rfam database...	0.68	0.63	0.75	59	46892	20	4	16	0	35
ASE_00121	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	39	45072	39	6	33	0	53
ASE_00122	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	47	43290	28	1	27	0	41
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	35	38436	36	0	32	4	50
ASE_00125	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.62	46	39266	29	4	24	1	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	50	40396	24	5	19	0	32
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	60	53217	24	0	24	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.48	0.44	0.53	49	62742	44	2	42	0	62
ASE_00131	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	43	39275	28	0	22	6	42
ASE_00132	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	51	50328	25	4	20	1	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.31	26	50318	59	7	52	0	69
ASE_00135	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.34	32	63097	66	3	58	5	77
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	53	48128	32	0	24	8	39
ASE_00137	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	59	48428	30	0	29	1	39
ASE_00138	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	32	40406	33	2	30	1	49
ASE_00139	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54200	30	3	24	3	46
ASE_00140	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	59	70774	43	7	36	0	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	55	67051	56	4	51	1	67
ASE_00145	RNaseP_arch links to Rfam database...	0.45	0.40	0.51	44	70039	45	1	41	3	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	56	70779	43	5	36	2	68
ASE_00151	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.37	29	51925	49	7	42	0	69
ASE_00153	RNaseP_nuc links to Rfam database...	0.49	0.53	0.46	39	57545	68	15	31	22	34
ASE_00154	RNaseP_arch links to Rfam database...	0.41	0.36	0.45	39	65255	48	3	44	1	68
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	38	53221	51	0	42	9	55
ASE_00165	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.56	48	52889	39	5	33	1	53
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.19	0.15	12	60647	82	18	49	15	52
ASE_00169	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.57	52	57199	40	3	37	0	55
ASE_00170	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	52	48748	29	2	26	1	41
ASE_00171	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	31	48440	45	3	42	0	63
ASE_00172	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	58906	37	6	30	1	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.45	41	60984	51	10	40	1	68
ASE_00175	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	70	59935	26	6	20	0	37
ASE_00176	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	56	59946	30	4	25	1	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	47	44181	25	6	19	0	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	41	51274	45	7	38	0	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	37	57540	58	1	52	5	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	44	61332	49	3	46	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	36	54532	54	2	45	7	66
ASE_00185	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	76	73429	31	0	31	0	52
ASE_00186	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	76	78893	41	1	33	7	56
ASE_00187	RNaseP_arch links to Rfam database...	0.46	0.43	0.50	49	68537	52	7	42	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.26	0.24	0.28	24	63105	62	13	48	1	78
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.48	0.57	43	45375	39	1	32	6	47
ASE_00194	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	68	73439	33	3	26	4	51
ASE_00196	RNaseP_arch links to Rfam database...	0.41	0.37	0.46	28	31565	36	2	31	3	47
ASE_00198	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	54	52560	41	4	32	5	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	59	46587	20	2	17	1	37
ASE_00204	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	67800	41	6	30	5	52
ASE_00205	RNaseP_arch links to Rfam database...	0.43	0.41	0.46	37	45975	47	6	38	3	53
ASE_00209	RNaseP_arch links to Rfam database...	0.50	0.42	0.59	37	43008	26	2	24	0	51
ASE_00210	RNaseP_arch links to Rfam database...	0.36	0.34	0.38	22	27203	38	4	32	2	43
ASE_00213	RNaseP_arch links to Rfam database...	0.21	0.18	0.24	12	27210	41	2	37	2	54
ASE_00214	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	60	56195	33	0	25	8	43
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.59	48	48435	34	3	30	1	51
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	50	39267	23	4	19	0	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	40404	47	6	38	3	68
ASE_00221	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.36	31	64535	54	1	53	0	86
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	38	78903	62	6	56	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	46895	44	8	34	2	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	54	42412	22	2	18	2	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	63	47812	21	1	19	1	33
ASE_00232	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.79	60	38427	16	7	9	0	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.49	48	75368	52	1	49	2	81
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45686	74	20	42	12	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	43	64155	65	4	59	2	71
ASE_00240	RNaseP_bact_a links to Rfam database...	0.23	0.20	0.25	19	46590	56	3	53	0	74
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	42	43892	23	1	21	1	45
ASE_00242	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	50	60980	46	2	43	1	62
ASE_00246	RNaseP_nuc links to Rfam database...	0.47	0.43	0.52	29	48149	48	1	26	21	38
ASE_00247	RNaseP_nuc links to Rfam database...	0.17	0.19	0.16	12	54209	84	22	42	20	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	32	62388	62	1	60	1	82
ASE_00250	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	77	78893	36	5	28	3	54
ASE_00254	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	20	36787	54	3	46	5	62
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	61	74583	47	5	42	0	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	44	50965	31	3	28	0	53
ASE_00259	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	41	73053	61	4	55	2	80
ASE_00263	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	61	70399	40	4	36	0	59
ASE_00264	RNaseP_nuc links to Rfam database...	0.45	0.43	0.47	43	49050	53	6	42	5	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	19	45080	57	5	46	6	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	51	72280	59	7	52	0	77
ASE_00274	RNaseP_bact_a links to Rfam database...	0.25	0.22	0.28	23	55528	60	4	56	0	80
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.32	23	48132	50	8	42	0	68
ASE_00279	RNaseP_bact_a links to Rfam database...	0.18	0.16	0.21	16	53226	60	3	56	1	85
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.58	44	51927	32	5	27	0	54
ASE_00281	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	40	44483	33	0	28	5	48
ASE_00282	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	49	77712	54	7	47	0	78
ASE_00283	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	35	61689	53	8	44	1	72
ASE_00284	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	50	58223	38	4	34	0	58
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	66	68913	33	0	27	6	56
ASE_00286	RNaseP_bact_a links to Rfam database...	0.28	0.24	0.33	22	46599	48	1	43	4	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.23	0.33	24	54873	49	3	46	0	79
ASE_00288	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	41	45984	31	2	29	0	52
ASE_00291	-	0.57	0.55	0.60	52	48429	35	13	22	0	42
ASE_00295	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.58	60	73817	45	9	34	2	71
ASE_00297	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	51	52891	34	5	28	1	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.42	40	67433	56	5	50	1	73
ASE_00299	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.73	61	49371	26	2	21	3	39
ASE_00313	RNaseP_nuc links to Rfam database...	0.48	0.47	0.49	42	62395	60	9	35	16	47
ASE_00327	RNaseP_nuc links to Rfam database...	0.37	0.36	0.38	32	57206	57	17	36	4	57
ASE_00328	RNaseP_bact_b links to Rfam database...	0.58	0.54	0.63	60	72676	39	5	30	4	52
ASE_00330	RNaseP_nuc links to Rfam database...	0.43	0.42	0.43	38	56192	59	10	40	9	52
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.51	0.59	59	75366	48	3	38	7	57
ASE_00337	RNaseP_nuc links to Rfam database...	0.40	0.39	0.40	28	39270	53	4	38	11	43
ASE_00338	RNaseP_nuc links to Rfam database...	0.61	0.58	0.64	57	66341	50	9	23	18	41
ASE_00340	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.44	30	45988	38	7	31	0	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	41	62394	47	1	45	1	74
ASE_00346	RNaseP_arch links to Rfam database...	0.53	0.47	0.61	46	48129	32	3	27	2	51
ASE_00353	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.47	46	57872	52	8	44	0	61
ASE_00359	RNaseP_arch links to Rfam database...	0.51	0.46	0.57	37	42713	28	2	26	0	43
ASE_00360	RNaseP_arch links to Rfam database...	0.43	0.38	0.49	25	29352	26	7	19	0	40
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	59	75360	48	2	45	1	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	56	48118	32	7	24	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	47	51276	38	6	31	1	47
ASE_00364	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.39	36	54193	56	3	53	0	69
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	39	58563	51	8	43	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	36	42999	41	4	32	5	50
ASE_00369	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	60	55850	35	3	32	0	47
ASE_00370	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	41837	26	1	24	1	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	51910	53	5	44	4	56
ASE_00374	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.31	22	44779	51	4	45	2	66
ASE_00375	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.72	64	60289	26	2	23	1	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	56867	38	4	31	3	54
ASE_00377	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.59	54	57539	42	1	36	5	53
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.49	35	45984	45	2	35	8	54
ASE_00380	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	45	54855	53	1	45	7	54
ASE_00382	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	40	41835	34	2	28	4	44
ASE_00383	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	48	54529	38	1	37	0	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.35	0.30	0.40	28	48446	51	2	40	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.53	31	41846	29	6	22	1	50
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	46	50319	43	6	32	5	50
ASE_00387	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	53	55856	41	2	34	5	51
ASE_00388	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.39	27	45683	51	2	41	8	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.18	13	42121	61	11	50	0	72
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	40	47821	41	3	31	7	53
ASE_00394	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	42	46890	42	7	32	3	51
ASE_00395	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	41	41545	37	3	27	7	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	34	41543	42	2	37	3	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.44	41	54522	52	3	49	0	64
ASE_00398	RNaseP_bact_a links to Rfam database...	0.29	0.26	0.33	27	55862	61	4	52	5	77
ASE_00400	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.66	61	57877	34	2	30	2	45
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	74	76921	33	4	29	0	52
ASE_00402	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	28	42416	44	5	37	2	57
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.67	60	55856	29	3	26	0	47
ASE_00404	RNaseP_bact_a links to Rfam database...	0.27	0.25	0.29	21	42999	57	3	48	6	64
ASE_00406	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	44	48747	45	2	35	8	50
ASE_00408	-	0.23	0.21	0.25	15	32325	47	2	43	2	56
ASE_00409	-	0.57	0.52	0.62	43	40972	26	0	26	0	40
ASE_00411	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	25	49377	56	10	43	3	64
ASE_00412	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.38	35	58220	56	10	46	0	70
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	39	44480	36	2	30	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.33	27	46277	59	4	52	3	68
ASE_00415	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.58	49	54861	39	2	34	3	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	57	77315	53	4	45	4	70
ASE_00417	RNaseP_arch links to Rfam database...	0.43	0.41	0.45	41	54523	53	4	47	2	59
ASE_00418	RNaseP_arch links to Rfam database...	0.07	0.07	0.07	5	38710	68	4	62	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	60	54850	37	6	30	1	43
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	46892	16	0	11	5	26
ASE_00423	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	55	56851	47	7	40	0	54
ASE_00426	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.45	45	60976	54	11	43	0	63
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	59	76529	51	3	45	3	66
ASE_00429	-	0.54	0.52	0.58	34	28144	26	3	22	1	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	68	46893	15	0	10	5	29
ASE_00431	RNaseP_bact_a links to Rfam database...	0.41	0.37	0.46	35	46284	44	4	37	3	60
ASE_00434	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.68	67	68167	39	9	22	8	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.45	48	79294	60	3	56	1	87
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	42	65979	46	3	42	1	74
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	55	64172	34	3	31	0	57
ASE_00447	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	67	60281	34	2	28	4	49
ASE_00448	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.46	42	64169	55	10	40	5	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	50	70772	55	3	51	1	75
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.52	54	77317	58	5	45	8	66
CRW_00443	-	0.00	0.00	0.00	0	456490	0	0	0	0	260
CRW_00608	-	0.73	0.67	0.80	53	35712	13	1	12	0	26
CRW_00610	Intron_gpI links to Rfam database...	0.06	0.06	0.07	5	36246	64	9	55	0	76
CRW_00611	-	0.75	0.68	0.84	51	31314	13	1	9	3	24
CRW_00613	Intron_gpI links to Rfam database...	0.59	0.50	0.70	39	34924	24	1	16	7	39
CRW_00618	Intron_gpI links to Rfam database...	0.21	0.21	0.21	13	56218	62	6	43	13	48
CRW_00633	Intron_gpI links to Rfam database...	0.50	0.49	0.51	52	63444	52	5	45	2	54
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.50	0.51	47	64527	48	11	35	2	47
CRW_00641	-	0.23	0.22	0.24	17	39831	66	8	47	11	59
CRW_00642	-	0.40	0.45	0.36	29	47198	62	15	36	11	36
CRW_00645	-	0.43	0.43	0.43	29	35443	39	10	29	0	38
CRW_00646	-	0.53	0.53	0.54	34	34917	32	6	23	3	30
CRW_00654	-	0.84	0.79	0.90	98	78101	14	1	10	3	26
CRW_00658	-	0.39	0.37	0.40	38	74597	58	9	47	2	64
CRW_00659	-	0.19	0.20	0.18	12	32320	54	9	44	1	49
CRW_00660	-	0.35	0.35	0.34	21	22094	40	6	34	0	39
CRW_00661	-	0.27	0.27	0.26	14	24256	47	7	33	7	37
CRW_00662	-	0.31	0.31	0.32	20	28617	52	3	40	9	45
CRW_00663	-	0.16	0.16	0.17	10	26046	55	4	46	5	51
CRW_00664	-	0.17	0.17	0.17	13	53551	71	8	56	7	65
CRW_00665	-	0.00	0.00	0.00	0	23601	53	11	41	1	48
CRW_00670	Intron_gpI links to Rfam database...	0.45	0.43	0.47	52	70015	58	8	50	0	68
CRW_00671	Intron_gpI links to Rfam database...	0.60	0.53	0.68	62	62744	32	2	27	3	55
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.41	0.45	45	72291	57	6	48	3	66
CRW_00677	-	0.50	0.50	0.50	52	71906	54	7	45	2	53
CRW_00679	-	0.35	0.36	0.36	38	76529	70	11	58	1	69
CRW_00687	-	0.55	0.53	0.57	35	28619	30	8	18	4	31
CRW_00688	-	0.74	0.70	0.78	40	21894	12	1	10	1	17
CRW_00689	-	0.38	0.38	0.39	29	33596	50	3	42	5	48
CRW_00690	-	0.58	0.54	0.63	37	33352	26	4	18	4	32
CRW_00691	-	0.47	0.45	0.50	30	27201	31	4	26	1	37
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.33	31	68540	77	20	44	13	59
CRW_00703	-	0.25	0.26	0.25	17	40402	52	7	44	1	49
CRW_00715	-	0.79	0.73	0.86	76	69290	14	1	11	2	28
CRW_00721	-	0.65	0.66	0.64	45	58583	51	7	18	26	23
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00020	-	0.75	0.65	0.87	13	765	2	0	2	0	7
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00078	-	0.35	0.32	0.38	37	49673	60	6	54	0	78
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	0.70	0.50	1.00	5	491	0	0	0	0	5
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00209	-	0.67	0.45	1.00	5	556	0	0	0	0	6
PDB_00243	-	0.76	0.58	1.00	7	623	0	0	0	0	5
PDB_00278	-	0.38	0.36	0.41	26	24912	38	3	35	0	46
PDB_00352	-	0.39	0.37	0.44	7	1209	9	0	9	0	12
PDB_00370	-	0.00	0.00	0.00	0	15188	37	15	22	0	25
PDB_00423	-	0.17	0.16	0.18	12	26729	55	6	49	0	62
PDB_00447	-	0.30	0.25	0.37	11	7110	19	4	15	0	33
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00701	-	0.32	0.30	0.33	33	45352	67	6	60	1	76
PDB_00713	-	0.45	0.43	0.47	9	1997	10	0	10	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	22	0	21	1	23
PDB_00747	-	0.69	0.55	0.86	44	24480	7	1	6	0	36
PDB_00804	-	0.00	0.00	0.00	0	15350	52	6	44	2	50
PDB_00827	Intron_gpI links to Rfam database...	0.74	0.60	0.91	49	26974	7	0	5	2	32
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00857	-	0.77	0.60	1.00	9	1072	0	0	0	0	6
PDB_00874	-	0.10	0.10	0.13	2	931	13	2	11	0	18
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00917	-	0.44	0.42	0.47	40	35160	48	7	38	3	55
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00919	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.41	34	44171	50	5	43	2	69
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01059	-	0.75	0.57	1.00	4	227	0	0	0	0	3
PDB_01070	-	0.33	0.30	0.36	16	12676	28	2	26	0	38
PDB_01073	SAM links to Rfam database...	0.56	0.47	0.67	16	4347	9	0	8	1	18
PDB_01092	glmS links to Rfam database...	0.74	0.63	0.87	33	10115	7	1	4	2	19
PDB_01129	-	0.42	0.45	0.40	32	35430	53	22	27	4	39
PDB_01157	-	0.11	0.10	0.13	10	50009	67	6	61	0	88
PDB_01194	-	0.77	0.60	1.00	9	487	0	0	0	0	6
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01250	-	0.18	0.15	0.22	6	12063	21	5	16	0	35
PDB_01260	-	0.49	0.36	0.69	9	1817	4	0	4	0	16
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
RFA_00632	HDV_ribozyme links to Rfam database...	0.59	0.57	0.62	16	4069	10	2	8	0	12
RFA_00636	HDV_ribozyme links to Rfam database...	0.65	0.64	0.67	18	3978	9	2	7	0	10
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.61	0.56	0.67	10	1876	5	0	5	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	1	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.47	0.39	0.58	7	2004	5	1	4	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	1	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	1	7	0	10
TMR_00007	tmRNA links to Rfam database...	0.30	0.30	0.31	32	61674	76	9	61	6	76
TMR_00008	tmRNA links to Rfam database...	0.44	0.42	0.46	44	65970	59	9	43	7	62
TMR_00010	tmRNA links to Rfam database...	0.51	0.48	0.55	46	57886	39	8	30	1	50
TMR_00012	tmRNA links to Rfam database...	0.26	0.27	0.26	22	64535	78	17	46	15	59
TMR_00014	tmRNA links to Rfam database...	0.64	0.62	0.67	68	68534	38	7	26	5	42
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.32	28	67073	64	7	53	4	74
TMR_00018	tmRNA links to Rfam database...	0.36	0.36	0.36	33	64528	61	12	47	2	59
TMR_00028	tmRNA links to Rfam database...	0.67	0.65	0.70	63	62745	28	14	13	1	34
TMR_00030	tmRNA links to Rfam database...	0.35	0.34	0.37	38	75751	70	15	51	4	73
TMR_00034	tmRNA links to Rfam database...	0.67	0.64	0.71	70	59933	34	1	27	6	40
TMR_00035	tmRNA links to Rfam database...	0.37	0.38	0.37	37	67797	67	9	53	5	61
TMR_00038	tmRNA links to Rfam database...	0.30	0.28	0.32	31	71155	71	3	64	4	79
TMR_00042	tmRNA links to Rfam database...	0.30	0.30	0.31	29	62742	66	10	54	2	69
TMR_00046	tmRNA links to Rfam database...	0.40	0.40	0.41	38	62742	59	10	45	4	58
TMR_00047	tmRNA links to Rfam database...	0.28	0.33	0.24	19	48437	71	16	44	11	38
TMR_00048	tmRNA links to Rfam database...	0.53	0.53	0.54	50	64887	48	15	28	5	45
TMR_00049	tmRNA links to Rfam database...	0.36	0.36	0.37	31	63106	57	7	46	4	56
TMR_00051	tmRNA links to Rfam database...	0.67	0.60	0.75	56	65628	34	3	16	15	38
TMR_00055	tmRNA links to Rfam database...	0.40	0.38	0.43	43	78903	62	10	47	5	71
TMR_00057	tmRNA links to Rfam database...	0.08	0.09	0.07	7	73822	98	28	63	7	72
TMR_00061	tmRNA links to Rfam database...	0.14	0.14	0.15	14	59590	89	13	68	8	85
TMR_00062	tmRNA links to Rfam database...	0.55	0.56	0.54	58	78499	55	12	37	6	46
TMR_00064	tmRNA links to Rfam database...	0.28	0.28	0.29	29	76927	72	20	52	0	74
TMR_00065	tmRNA links to Rfam database...	0.41	0.39	0.43	41	76541	55	15	39	1	65
TMR_00073	tmRNA links to Rfam database...	0.34	0.31	0.38	36	65608	59	6	53	0	81
TMR_00076	tmRNA links to Rfam database...	0.48	0.48	0.49	48	70778	57	10	40	7	52
TMR_00080	tmRNA links to Rfam database...	0.26	0.27	0.26	26	70399	75	26	49	0	70
TMR_00081	tmRNA links to Rfam database...	0.46	0.42	0.51	44	67075	44	3	39	2	62
TMR_00082	tmRNA links to Rfam database...	0.57	0.54	0.59	52	67808	39	12	24	3	44
TMR_00083	tmRNA links to Rfam database...	0.59	0.55	0.64	58	68174	41	5	28	8	47
TMR_00092	tmRNA links to Rfam database...	0.63	0.64	0.62	65	67423	45	12	28	5	36
TMR_00093	tmRNA links to Rfam database...	0.50	0.50	0.51	51	64161	56	13	36	7	51
TMR_00096	tmRNA links to Rfam database...	0.12	0.12	0.13	12	64886	86	17	65	4	88
TMR_00101	tmRNA links to Rfam database...	0.53	0.50	0.55	54	64163	56	7	37	12	53
TMR_00102	tmRNA links to Rfam database...	0.43	0.44	0.44	44	64160	60	15	42	3	57
TMR_00103	tmRNA links to Rfam database...	0.42	0.42	0.42	45	64155	61	8	53	0	63
TMR_00104	-	0.06	0.07	0.06	5	66709	83	29	52	2	65
TMR_00116	tmRNA links to Rfam database...	0.52	0.47	0.57	49	64894	50	2	35	13	55
TMR_00119	tmRNA links to Rfam database...	0.53	0.49	0.58	51	71922	43	7	30	6	53
TMR_00123	tmRNA links to Rfam database...	0.43	0.39	0.47	39	66347	49	5	39	5	62
TMR_00124	tmRNA links to Rfam database...	0.58	0.55	0.61	54	70412	41	4	30	7	44
TMR_00125	tmRNA links to Rfam database...	0.28	0.27	0.28	27	64165	73	12	57	4	72
TMR_00127	tmRNA links to Rfam database...	0.53	0.48	0.58	47	62754	40	4	30	6	50
TMR_00128	tmRNA links to Rfam database...	0.64	0.63	0.66	60	60984	33	11	20	2	36
TMR_00131	tmRNA links to Rfam database...	0.30	0.27	0.33	27	64899	60	10	44	6	72
TMR_00135	tmRNA links to Rfam database...	0.57	0.56	0.59	55	62742	41	9	29	3	44
TMR_00136	tmRNA links to Rfam database...	0.27	0.27	0.28	27	74595	72	15	54	3	74
TMR_00137	tmRNA links to Rfam database...	0.18	0.19	0.18	17	60980	79	17	61	1	72
TMR_00139	tmRNA links to Rfam database...	0.54	0.56	0.52	51	62030	53	19	28	6	40
TMR_00140	tmRNA links to Rfam database...	0.46	0.44	0.48	44	73829	57	5	42	10	56
TMR_00142	tmRNA links to Rfam database...	0.55	0.52	0.58	53	70785	47	8	30	9	49
TMR_00143	tmRNA links to Rfam database...	0.61	0.55	0.66	57	64534	39	9	20	10	46
TMR_00144	tmRNA links to Rfam database...	0.37	0.36	0.39	37	74209	59	12	47	0	66
TMR_00146	tmRNA links to Rfam database...	0.83	0.79	0.87	33	32093	30	3	2	25	9
TMR_00150	tmRNA links to Rfam database...	0.64	0.62	0.67	26	43032	47	3	10	34	16
TMR_00155	tmRNA links to Rfam database...	0.58	0.55	0.62	57	61684	43	5	30	8	47
TMR_00156	tmRNA links to Rfam database...	0.21	0.21	0.22	20	60286	76	14	58	4	77
TMR_00158	tmRNA links to Rfam database...	0.36	0.33	0.40	33	60643	54	10	40	4	66
TMR_00159	tmRNA links to Rfam database...	0.26	0.27	0.26	25	62032	71	17	54	0	67
TMR_00160	tmRNA links to Rfam database...	0.47	0.47	0.47	45	64524	60	15	36	9	50
TMR_00164	tmRNA links to Rfam database...	0.34	0.32	0.36	34	66700	69	6	55	8	72
TMR_00165	tmRNA links to Rfam database...	0.47	0.44	0.49	43	61689	51	10	34	7	54
TMR_00166	tmRNA links to Rfam database...	0.36	0.36	0.36	36	61676	68	11	53	4	65
TMR_00168	tmRNA links to Rfam database...	0.55	0.52	0.58	59	60974	45	3	39	3	55
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42143	57	14	23	20	27
TMR_00179	tmRNA links to Rfam database...	0.22	0.21	0.23	21	67070	76	10	60	6	77
TMR_00180	tmRNA links to Rfam database...	0.52	0.51	0.54	50	67069	50	9	33	8	49
TMR_00182	tmRNA links to Rfam database...	0.41	0.38	0.44	39	66342	54	7	42	5	63
TMR_00183	tmRNA links to Rfam database...	0.18	0.17	0.18	18	63090	88	14	68	6	85
TMR_00184	tmRNA links to Rfam database...	0.43	0.41	0.45	42	63097	53	4	47	2	60
TMR_00193	tmRNA links to Rfam database...	0.24	0.24	0.25	19	59264	64	19	38	7	61
TMR_00194	tmRNA links to Rfam database...	0.52	0.48	0.56	45	62755	40	10	25	5	48
TMR_00196	tmRNA links to Rfam database...	0.18	0.18	0.19	17	60986	78	9	63	6	80
TMR_00199	tmRNA links to Rfam database...	0.51	0.51	0.51	47	62742	52	19	27	6	45
TMR_00200	-	0.26	0.25	0.27	19	41546	60	7	44	9	56
TMR_00204	tmRNA links to Rfam database...	0.44	0.41	0.47	40	60292	52	18	28	6	57
TMR_00207	tmRNA links to Rfam database...	0.10	0.10	0.11	10	72296	88	6	78	4	93
TMR_00223	tmRNA links to Rfam database...	0.31	0.31	0.32	29	64171	65	8	53	4	66
TMR_00224	tmRNA links to Rfam database...	0.54	0.51	0.58	52	64890	44	4	34	6	49
TMR_00226	tmRNA links to Rfam database...	0.36	0.32	0.40	34	69665	57	8	44	5	71
TMR_00227	tmRNA links to Rfam database...	0.54	0.53	0.56	54	70028	46	11	32	3	47
TMR_00234	tmRNA links to Rfam database...	0.60	0.55	0.66	56	58911	36	6	23	7	46
TMR_00239	tmRNA links to Rfam database...	0.48	0.47	0.50	45	61686	46	8	37	1	51
TMR_00240	tmRNA links to Rfam database...	0.47	0.47	0.48	40	63106	50	7	37	6	45
TMR_00246	-	0.73	0.71	0.75	24	78178	87	2	6	79	10
TMR_00248	tmRNA links to Rfam database...	0.13	0.16	0.11	6	54232	80	22	25	33	32
TMR_00257	tmRNA links to Rfam database...	0.26	0.24	0.28	24	67074	68	9	54	5	74
TMR_00259	tmRNA links to Rfam database...	0.31	0.29	0.33	30	67806	60	11	49	0	73
TMR_00261	tmRNA links to Rfam database...	0.43	0.43	0.43	43	66695	58	13	44	1	58
TMR_00262	tmRNA links to Rfam database...	0.34	0.35	0.34	36	74199	74	19	51	4	68
TMR_00271	tmRNA links to Rfam database...	0.41	0.38	0.43	35	64180	53	15	31	7	56
TMR_00274	tmRNA links to Rfam database...	0.62	0.57	0.67	60	66705	35	6	24	5	45
TMR_00278	tmRNA links to Rfam database...	0.41	0.40	0.41	41	67796	67	9	50	8	61
TMR_00279	tmRNA links to Rfam database...	0.42	0.41	0.42	39	68913	64	10	44	10	55
TMR_00280	tmRNA links to Rfam database...	0.61	0.61	0.60	62	65963	47	9	32	6	39
TMR_00283	tmRNA links to Rfam database...	0.35	0.36	0.34	35	65239	69	16	51	2	61
TMR_00289	tmRNA links to Rfam database...	0.38	0.38	0.39	37	67067	68	12	45	11	61
TMR_00290	tmRNA links to Rfam database...	0.18	0.18	0.17	17	64161	87	7	76	4	75
TMR_00296	tmRNA links to Rfam database...	0.31	0.31	0.31	30	68910	71	19	47	5	68
TMR_00298	tmRNA links to Rfam database...	0.34	0.35	0.34	35	68162	74	11	57	6	66
TMR_00300	tmRNA links to Rfam database...	0.75	0.70	0.81	78	70404	29	3	15	11	34
TMR_00302	tmRNA links to Rfam database...	0.23	0.23	0.23	22	77324	81	19	56	6	72
TMR_00305	tmRNA links to Rfam database...	0.34	0.30	0.39	31	60995	55	6	43	6	71
TMR_00306	tmRNA links to Rfam database...	0.39	0.38	0.40	40	64160	64	11	50	3	66
TMR_00310	tmRNA links to Rfam database...	0.50	0.46	0.54	45	63819	52	6	33	13	53
TMR_00317	tmRNA links to Rfam database...	0.36	0.37	0.36	38	68159	71	14	54	3	64
TMR_00331	tmRNA links to Rfam database...	0.61	0.61	0.60	50	66712	44	7	26	11	32
TMR_00332	tmRNA links to Rfam database...	0.31	0.28	0.34	28	67079	58	9	45	4	71
TMR_00334	tmRNA links to Rfam database...	0.31	0.30	0.32	30	66702	67	10	53	4	71
TMR_00340	tmRNA links to Rfam database...	0.47	0.44	0.49	36	64188	58	4	33	21	45
TMR_00341	tmRNA links to Rfam database...	0.34	0.34	0.34	31	63099	62	12	48	2	61
TMR_00343	tmRNA links to Rfam database...	0.59	0.53	0.64	56	64893	41	2	29	10	49
TMR_00345	tmRNA links to Rfam database...	0.61	0.57	0.66	59	63814	37	3	27	7	45
TMR_00346	tmRNA links to Rfam database...	0.54	0.51	0.57	48	64177	40	10	26	4	46
TMR_00348	tmRNA links to Rfam database...	0.43	0.41	0.44	41	77328	72	11	41	20	58
TMR_00358	tmRNA links to Rfam database...	0.69	0.68	0.71	67	74984	47	8	19	20	32
TMR_00366	tmRNA links to Rfam database...	0.44	0.42	0.47	42	67806	52	11	37	4	58
TMR_00372	tmRNA links to Rfam database...	0.54	0.52	0.56	50	70411	50	8	31	11	46
TMR_00375	tmRNA links to Rfam database...	0.34	0.34	0.34	33	73438	70	15	50	5	65
TMR_00376	tmRNA links to Rfam database...	0.50	0.48	0.52	46	74602	52	13	30	9	49
TMR_00378	tmRNA links to Rfam database...	0.42	0.40	0.44	39	67808	53	12	37	4	58
TMR_00383	tmRNA links to Rfam database...	0.24	0.24	0.24	24	66696	80	22	53	5	76
TMR_00384	tmRNA links to Rfam database...	0.32	0.30	0.34	32	65609	67	2	60	5	76
TMR_00393	tmRNA links to Rfam database...	0.56	0.62	0.51	33	53236	59	16	16	27	20
TMR_00395	tmRNA links to Rfam database...	0.60	0.54	0.67	59	64532	34	4	25	5	50
TMR_00398	tmRNA links to Rfam database...	0.68	0.62	0.73	66	65251	29	2	22	5	40
TMR_00399	tmRNA links to Rfam database...	0.31	0.30	0.32	28	64892	65	13	47	5	66
TMR_00404	tmRNA links to Rfam database...	0.35	0.37	0.34	34	67428	74	11	55	8	58
TMR_00408	tmRNA links to Rfam database...	0.58	0.60	0.55	53	65970	52	17	26	9	35
TMR_00409	tmRNA links to Rfam database...	0.57	0.61	0.54	28	68583	57	10	14	33	18
TMR_00411	tmRNA links to Rfam database...	0.41	0.43	0.40	37	60982	65	12	44	9	50
TMR_00415	tmRNA links to Rfam database...	0.53	0.50	0.55	51	67069	43	4	37	2	50
TMR_00422	tmRNA links to Rfam database...	0.54	0.53	0.56	49	67808	46	8	31	7	43
TMR_00423	tmRNA links to Rfam database...	0.51	0.53	0.49	39	63823	56	16	25	15	34
TMR_00427	tmRNA links to Rfam database...	0.38	0.37	0.40	36	67438	61	8	46	7	61
TMR_00429	tmRNA links to Rfam database...	0.22	0.21	0.23	23	74592	82	12	64	6	86
TMR_00431	tmRNA links to Rfam database...	0.68	0.62	0.76	34	51958	47	5	6	36	21
TMR_00432	tmRNA links to Rfam database...	0.54	0.53	0.55	55	79700	53	13	32	8	49
TMR_00439	tmRNA links to Rfam database...	0.35	0.36	0.34	36	68530	71	15	54	2	65
TMR_00441	tmRNA links to Rfam database...	0.17	0.18	0.16	15	62035	79	20	58	1	68
TMR_00443	tmRNA links to Rfam database...	0.32	0.28	0.36	29	67080	58	5	47	6	75
TMR_00448	tmRNA links to Rfam database...	0.30	0.29	0.32	27	62043	58	6	52	0	65
TMR_00451	tmRNA links to Rfam database...	0.25	0.22	0.28	20	63475	55	7	44	4	69
TMR_00457	tmRNA links to Rfam database...	0.29	0.28	0.30	29	78508	73	14	55	4	73
TMR_00458	tmRNA links to Rfam database...	0.26	0.25	0.28	23	63464	69	8	51	10	70
TMR_00460	tmRNA links to Rfam database...	0.39	0.39	0.40	41	79299	65	13	48	4	65
TMR_00465	tmRNA links to Rfam database...	0.24	0.24	0.24	23	64167	75	16	55	4	71
TMR_00469	tmRNA links to Rfam database...	0.34	0.33	0.35	33	64525	62	10	52	0	67
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64522	77	18	57	2	74
TMR_00478	tmRNA links to Rfam database...	0.15	0.16	0.15	16	71903	94	20	71	3	83
TMR_00498	tmRNA links to Rfam database...	0.25	0.25	0.25	25	68907	74	15	59	0	74
TMR_00499	tmRNA links to Rfam database...	0.13	0.14	0.13	14	64510	101	5	91	5	85
TMR_00501	tmRNA links to Rfam database...	0.44	0.43	0.44	40	62391	52	12	38	2	52
TMR_00502	tmRNA links to Rfam database...	0.30	0.30	0.31	28	75375	71	12	51	8	65
TMR_00503	tmRNA links to Rfam database...	0.47	0.45	0.50	50	67795	58	0	51	7	61
TMR_00519	tmRNA links to Rfam database...	0.24	0.24	0.24	23	63095	82	13	59	10	72
TMR_00520	tmRNA links to Rfam database...	0.31	0.29	0.33	29	63102	70	5	54	11	70
TMR_00522	tmRNA links to Rfam database...	0.25	0.24	0.27	23	63104	74	11	52	11	74
TMR_00528	tmRNA links to Rfam database...	0.13	0.12	0.14	12	63102	86	8	68	10	85
TMR_00540	tmRNA links to Rfam database...	0.44	0.42	0.45	44	73438	55	15	39	1	60
TMR_00541	tmRNA links to Rfam database...	0.49	0.47	0.51	49	61680	49	3	44	2	56
TMR_00547	tmRNA links to Rfam database...	0.46	0.43	0.49	43	65253	45	1	44	0	57
TMR_00553	tmRNA links to Rfam database...	0.32	0.30	0.36	24	48138	49	4	39	6	57
TMR_00559	tmRNA links to Rfam database...	0.37	0.36	0.39	36	62389	56	11	45	0	65
TMR_00560	tmRNA links to Rfam database...	0.57	0.54	0.60	53	60987	36	5	30	1	45
TMR_00562	tmRNA links to Rfam database...	0.39	0.36	0.42	37	72683	58	9	42	7	65
TMR_00563	tmRNA links to Rfam database...	0.33	0.34	0.32	35	75358	75	16	57	2	68
TMR_00566	tmRNA links to Rfam database...	0.46	0.46	0.46	46	60626	54	7	47	0	54
TMR_00568	tmRNA links to Rfam database...	0.33	0.31	0.34	31	60635	66	9	51	6	68
TMR_00570	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60280	64	6	52	6	57
TMR_00571	tmRNA links to Rfam database...	0.35	0.33	0.38	33	60639	62	8	46	8	66
TMR_00576	tmRNA links to Rfam database...	0.35	0.32	0.39	33	60293	57	5	47	5	69
TMR_00580	tmRNA links to Rfam database...	0.37	0.34	0.40	34	60642	55	8	42	5	66
TMR_00581	tmRNA links to Rfam database...	0.58	0.55	0.61	54	62392	35	3	32	0	44
TMR_00584	tmRNA links to Rfam database...	0.46	0.43	0.48	42	60988	52	5	40	7	55
TMR_00586	tmRNA links to Rfam database...	0.46	0.38	0.55	37	61008	35	1	29	5	60
TMR_00587	tmRNA links to Rfam database...	0.68	0.65	0.71	65	61333	29	4	23	2	35
TMR_00588	tmRNA links to Rfam database...	0.30	0.31	0.30	31	77317	78	22	51	5	70
TMR_00594	tmRNA links to Rfam database...	0.48	0.48	0.49	50	79299	57	10	42	5	54
TMR_00596	tmRNA links to Rfam database...	0.28	0.27	0.29	26	78120	72	18	46	8	69
TMR_00599	tmRNA links to Rfam database...	0.40	0.42	0.38	30	63111	62	11	38	13	42
TMR_00600	tmRNA links to Rfam database...	0.30	0.29	0.31	33	79694	74	15	58	1	82
TMR_00601	tmRNA links to Rfam database...	0.27	0.29	0.25	12	58948	80	10	26	44	30
TMR_00603	tmRNA links to Rfam database...	0.59	0.60	0.58	26	60333	66	10	9	47	17
TMR_00604	tmRNA links to Rfam database...	0.56	0.54	0.59	61	62731	43	7	36	0	51
TMR_00605	tmRNA links to Rfam database...	0.50	0.48	0.52	52	74205	51	12	36	3	56
TMR_00606	tmRNA links to Rfam database...	0.53	0.50	0.56	54	68909	48	6	37	5	53
TMR_00609	tmRNA links to Rfam database...	0.71	0.68	0.75	77	63443	26	6	20	0	36
TMR_00610	tmRNA links to Rfam database...	0.63	0.60	0.67	62	62035	45	4	27	14	42
TMR_00611	tmRNA links to Rfam database...	0.62	0.62	0.62	63	61324	42	8	30	4	39
TMR_00612	tmRNA links to Rfam database...	0.42	0.41	0.42	43	60624	59	7	52	0	61
TMR_00614	tmRNA links to Rfam database...	0.70	0.67	0.74	70	60980	33	3	22	8	34
TMR_00615	tmRNA links to Rfam database...	0.56	0.54	0.58	52	63814	48	8	29	11	44
TMR_00616	tmRNA links to Rfam database...	0.44	0.43	0.46	43	67067	56	8	43	5	56
TMR_00617	tmRNA links to Rfam database...	0.39	0.41	0.38	24	34652	42	8	32	2	34
TMR_00623	tmRNA links to Rfam database...	0.36	0.32	0.40	35	61337	56	3	50	3	73
TMR_00624	tmRNA links to Rfam database...	0.69	0.67	0.71	72	62379	32	10	20	2	36
TMR_00625	tmRNA links to Rfam database...	0.46	0.47	0.45	50	78893	66	17	43	6	56
TMR_00626	tmRNA links to Rfam database...	0.33	0.32	0.33	35	67791	71	10	60	1	74
TMR_00680	tmRNA links to Rfam database...	0.31	0.31	0.32	31	67798	71	14	53	4	68
TMR_00681	tmRNA links to Rfam database...	0.50	0.48	0.51	47	65974	55	6	39	10	50
TMR_00686	tmRNA links to Rfam database...	0.42	0.41	0.44	44	71153	60	14	42	4	64
TMR_00687	tmRNA links to Rfam database...	0.54	0.50	0.58	56	71535	44	8	32	4	55
TMR_00698	tmRNA links to Rfam database...	0.49	0.49	0.50	51	63088	51	16	35	0	53
TMR_00699	tmRNA links to Rfam database...	0.52	0.45	0.61	46	67085	34	0	30	4	56
TMR_00702	tmRNA links to Rfam database...	0.41	0.38	0.44	38	67074	56	7	42	7	62
TMR_00703	tmRNA links to Rfam database...	0.26	0.24	0.29	24	67444	64	5	55	4	75
TMR_00706	tmRNA links to Rfam database...	0.37	0.34	0.40	35	66342	54	11	42	1	68
TMR_00711	tmRNA links to Rfam database...	0.47	0.45	0.49	44	67807	52	15	30	7	54
TMR_00712	tmRNA links to Rfam database...	0.30	0.29	0.31	32	78502	79	16	56	7	77
TMR_00716	tmRNA links to Rfam database...	0.17	0.16	0.18	16	62744	79	7	68	4	84

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of UNAFold - scored higher in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]

Performance of RNASLOpt - scored lower in this pairwise comparison

1. Total counts & total scores for RNASLOpt

2. Individual counts for RNASLOpt [ download as .csv ]