Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of NanoFolder
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & NanoFolder [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
NanoFolder |
|---|
| MCC |
0.783 |
>
|
0.346 |
| Average MCC ± 95% Confidence Intervals |
0.764
±
0.133
|
>
|
0.385
±
0.426
|
| Sensitivity |
0.712 |
>
|
0.400 |
| Positive Predictive Value |
0.864 |
>
|
0.311 |
| Total TP |
89 |
>
|
50 |
| Total TN |
14173 |
>
|
14115 |
| Total FP |
17 |
<
|
124 |
| Total FP CONTRA |
11 |
<
|
19 |
| Total FP INCONS |
3 |
<
|
92 |
| Total FP COMP |
3 |
<
|
13 |
| Total FN |
36 |
<
|
75 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and NanoFolder).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and NanoFolder).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
89 |
| Total TN |
14173 |
| Total FP |
17 |
| Total FP CONTRA |
11 |
| Total FP INCONS |
3 |
| Total FP COMP |
3 |
| Total FN |
36 |
| Total Scores |
|---|
| MCC |
0.783 |
| Average MCC ± 95% Confidence Intervals |
0.764
±
0.133
|
| Sensitivity |
0.712 |
| Positive Predictive Value |
0.864 |
| Nr of predictions |
6 |
Performance of NanoFolder
- scored lower in this pairwise comparison
1. Total counts & total scores for NanoFolder
| Total Base Pair Counts |
|---|
| Total TP |
50 |
| Total TN |
14115 |
| Total FP |
124 |
| Total FP CONTRA |
19 |
| Total FP INCONS |
92 |
| Total FP COMP |
13 |
| Total FN |
75 |
| Total Scores |
|---|
| MCC |
0.346 |
| Average MCC ± 95% Confidence Intervals |
0.385
±
0.426
|
| Sensitivity |
0.400 |
| Positive Predictive Value |
0.311 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
